Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC13.17□□□□□ -0.38e-7■■□□□ 14.5
UPF1Q92900 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.166e-7■■□□□ 14.5
UPF1Q92900 PTPN18-207ENST00000462321 1717 ntTSL 224.45■■□□□ 1.52e-7■■□□□ 14.5
UPF1Q92900 TMEM37-204ENST00000465296 820 ntTSL 325.92■■□□□ 1.745e-6■■□□□ 14.5
UPF1Q92900 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.482e-8■■□□□ 14.5
UPF1Q92900 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.42e-8■■□□□ 14.5
UPF1Q92900 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC7.31□□□□□ -1.242e-14■■□□□ 14.5
UPF1Q92900 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.242e-6■■□□□ 14.5
UPF1Q92900 NADK-203ENST00000342348 1722 ntAPPRIS ALT2 TSL 219.6■□□□□ 0.736e-7■■□□□ 14.5
UPF1Q92900 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.083e-7■■□□□ 14.5
UPF1Q92900 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.488e-9■■□□□ 14.5
UPF1Q92900 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC33.54■■■□□ 2.965e-9■■□□□ 14.5
UPF1Q92900 SLC2A4RG-207ENST00000493772 1328 ntTSL 1 (best)30.29■■■□□ 2.445e-9■■□□□ 14.5
UPF1Q92900 SLC2A4RG-202ENST00000473157 991 ntTSL 327.26■■□□□ 1.955e-9■■□□□ 14.5
UPF1Q92900 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC32.72■■■□□ 2.832e-6■■□□□ 14.5
UPF1Q92900 ARPC4-202ENST00000417500 957 ntTSL 528.17■■■□□ 2.12e-6■■□□□ 14.5
UPF1Q92900 ARPC4-204ENST00000440787 910 ntTSL 327.45■■□□□ 1.982e-6■■□□□ 14.5
UPF1Q92900 MRPL42-210ENST00000552938 999 ntTSL 213.92□□□□□ -0.189e-19■■□□□ 14.5
UPF1Q92900 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC11.27□□□□□ -0.619e-19■■□□□ 14.5
UPF1Q92900 MRPL42-207ENST00000551396 725 ntTSL 511.01□□□□□ -0.659e-19■■□□□ 14.5
UPF1Q92900 MRPL42-209ENST00000552326 567 ntTSL 410.11□□□□□ -0.799e-19■■□□□ 14.5
UPF1Q92900 MRPL42-205ENST00000549561 775 ntTSL 39.71□□□□□ -0.869e-19■■□□□ 14.5
UPF1Q92900 MRPL42-201ENST00000358678 2105 ntTSL 1 (best)8.33□□□□□ -1.089e-19■■□□□ 14.5
UPF1Q92900 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC6.24□□□□□ -1.419e-19■■□□□ 14.5
UPF1Q92900 GYPE-203ENST00000506264 1624 ntTSL 59.62□□□□□ -0.873e-13■■□□□ 14.4
UPF1Q92900 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.063e-13■■□□□ 14.4
UPF1Q92900 BMPR1A-205ENST00000638429 5632 ntTSL 517.24■□□□□ 0.354e-10■■□□□ 14.4
UPF1Q92900 BMPR1A-201ENST00000372037 11255 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.914e-10■■□□□ 14.4
UPF1Q92900 BMPR1A-204ENST00000636056 3233 ntTSL 55.19□□□□□ -1.584e-10■■□□□ 14.4
UPF1Q92900 BMPR1A-203ENST00000635816 3238 ntTSL 54.67□□□□□ -1.664e-10■■□□□ 14.4
UPF1Q92900 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.838e-7■■□□□ 14.4
UPF1Q92900 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.988e-7■■□□□ 14.4
UPF1Q92900 ST3GAL2-203ENST00000561708 581 ntTSL 424.36■■□□□ 1.498e-11■■□□□ 14.4
UPF1Q92900 CTNND1-210ENST00000524630 6553 ntAPPRIS P1 TSL 2 BASIC9.9□□□□□ -0.826e-7■■□□□ 14.4
UPF1Q92900 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC9.23□□□□□ -0.936e-7■■□□□ 14.4
UPF1Q92900 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC8.91□□□□□ -0.986e-7■■□□□ 14.4
UPF1Q92900 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC8.91□□□□□ -0.986e-7■■□□□ 14.4
UPF1Q92900 CTNND1-208ENST00000428599 6016 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.996e-7■■□□□ 14.4
UPF1Q92900 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC8.9□□□□□ -0.996e-7■■□□□ 14.4
UPF1Q92900 CTNND1-237ENST00000534579 6024 ntTSL 5 BASIC8.9□□□□□ -0.996e-7■■□□□ 14.4
UPF1Q92900 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.016e-7■■□□□ 14.4
UPF1Q92900 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC8.74□□□□□ -1.016e-7■■□□□ 14.4
UPF1Q92900 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC8.43□□□□□ -1.066e-7■■□□□ 14.4
UPF1Q92900 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC8.42□□□□□ -1.066e-7■■□□□ 14.4
UPF1Q92900 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC8.42□□□□□ -1.066e-7■■□□□ 14.4
UPF1Q92900 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC8.38□□□□□ -1.076e-7■■□□□ 14.4
UPF1Q92900 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC8.21□□□□□ -1.16e-7■■□□□ 14.4
UPF1Q92900 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC8.17□□□□□ -1.16e-7■■□□□ 14.4
UPF1Q92900 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC8.17□□□□□ -1.16e-7■■□□□ 14.4
UPF1Q92900 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC8.07□□□□□ -1.126e-7■■□□□ 14.4
UPF1Q92900 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC8.06□□□□□ -1.126e-7■■□□□ 14.4
UPF1Q92900 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC7.97□□□□□ -1.136e-7■■□□□ 14.4
UPF1Q92900 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC7.95□□□□□ -1.146e-7■■□□□ 14.4
UPF1Q92900 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC7.94□□□□□ -1.146e-7■■□□□ 14.4
UPF1Q92900 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC7.94□□□□□ -1.146e-7■■□□□ 14.4
UPF1Q92900 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC7.44□□□□□ -1.226e-7■■□□□ 14.4
UPF1Q92900 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC7.36□□□□□ -1.236e-7■■□□□ 14.4
UPF1Q92900 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC7.14□□□□□ -1.276e-7■■□□□ 14.4
UPF1Q92900 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.92□□□□□ -1.36e-7■■□□□ 14.4
UPF1Q92900 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.67□□□□□ -1.346e-7■■□□□ 14.4
UPF1Q92900 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.67□□□□□ -1.346e-7■■□□□ 14.4
UPF1Q92900 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.451e-12■■□□□ 14.4
UPF1Q92900 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.351e-12■■□□□ 14.4
UPF1Q92900 FGD5-AS1-203ENST00000426200 1874 ntTSL 1 (best)27.38■■□□□ 1.972e-12■■□□□ 14.4
UPF1Q92900 PEAR1-206ENST00000469390 4470 ntTSL 216.39■□□□□ 0.215e-6■■□□□ 14.4
UPF1Q92900 HK1-212ENST00000480047 575 ntTSL 1 (best)14.49□□□□□ -0.094e-11■■□□□ 14.4
UPF1Q92900 GPBP1L1-214ENST00000498128 559 ntTSL 314.25□□□□□ -0.135e-6■■□□□ 14.4
UPF1Q92900 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.245e-6■■□□□ 14.4
UPF1Q92900 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.285e-6■■□□□ 14.4
UPF1Q92900 HK1-213ENST00000483054 592 ntTSL 310.47□□□□□ -0.734e-11■■□□□ 14.4
UPF1Q92900 HK1-208ENST00000464803 450 ntTSL 1 (best)10.45□□□□□ -0.744e-11■■□□□ 14.4
UPF1Q92900 HK1-210ENST00000476368 605 ntTSL 310.09□□□□□ -0.794e-11■■□□□ 14.4
UPF1Q92900 HK1-204ENST00000421088 707 ntTSL 59.03□□□□□ -0.964e-11■■□□□ 14.4
UPF1Q92900 UCK2-208ENST00000479872 4669 ntTSL 28.82□□□□□ -14e-11■■□□□ 14.4
UPF1Q92900 HK1-214ENST00000483077 750 ntTSL 36.97□□□□□ -1.294e-11■■□□□ 14.4
UPF1Q92900 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.118e-7■■□□□ 14.4
UPF1Q92900 C1orf109-211ENST00000494120 2570 ntTSL 1 (best)14.66□□□□□ -0.068e-7■■□□□ 14.4
UPF1Q92900 C1orf109-213ENST00000609516 2622 nt10.26□□□□□ -0.778e-7■■□□□ 14.4
UPF1Q92900 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.466e-7■■□□□ 14.4
UPF1Q92900 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.416e-7■■□□□ 14.4
UPF1Q92900 AC016876.2-201ENST00000581621 4554 ntTSL 2 BASIC12.08□□□□□ -0.486e-7■■□□□ 14.4
UPF1Q92900 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.192e-7■■□□□ 14.4
UPF1Q92900 TSPAN31-211ENST00000550791 2118 ntTSL 213.48□□□□□ -0.252e-7■■□□□ 14.4
UPF1Q92900 TSPAN31-203ENST00000546993 2026 ntTSL 213.06□□□□□ -0.322e-7■■□□□ 14.4
UPF1Q92900 TSPAN31-206ENST00000547992 3434 ntTSL 1 (best) BASIC10.52□□□□□ -0.732e-7■■□□□ 14.4
UPF1Q92900 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.892e-8■■□□□ 14.4
UPF1Q92900 WBP1L-202ENST00000448841 4085 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.179e-8■■□□□ 14.4
UPF1Q92900 WBP1L-201ENST00000369889 4107 ntAPPRIS P3 TSL 1 (best) BASIC8.47□□□□□ -1.059e-8■■□□□ 14.4
UPF1Q92900 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC28.87■■■□□ 2.212e-7■■□□□ 14.4
UPF1Q92900 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.82e-7■■□□□ 14.4
UPF1Q92900 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.222e-7■■□□□ 14.4
UPF1Q92900 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.91□□□□□ -0.022e-7■■□□□ 14.4
UPF1Q92900 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.132e-8■■□□□ 14.4
UPF1Q92900 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC12.41□□□□□ -0.422e-8■■□□□ 14.4
UPF1Q92900 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC18.35■□□□□ 0.536e-7■■□□□ 14.3
UPF1Q92900 PPT1-215ENST00000641471 2368 ntBASIC16■□□□□ 0.156e-7■■□□□ 14.3
UPF1Q92900 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.126e-7■■□□□ 14.3
UPF1Q92900 PPT1-212ENST00000641236 2481 nt14.7□□□□□ -0.066e-7■■□□□ 14.3
UPF1Q92900 PPT1-217ENST00000641691 2253 nt14.37□□□□□ -0.116e-7■■□□□ 14.3
UPF1Q92900 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC14.09□□□□□ -0.156e-7■■□□□ 14.3
Retrieved 100 of 15,879 protein–RNA pairs in 116.3 ms