Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC27.81■■■□□ 2.043e-6■□□□□ 11.1
DDX55Q8NHQ9 SSR2-207ENST00000473699 1027 ntTSL 318.8■□□□□ 0.63e-6■□□□□ 11.1
DDX55Q8NHQ9 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.051e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC32.38■■■□□ 2.771e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC32.34■■■□□ 2.771e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC31.61■■■□□ 2.651e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.611e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-220ENST00000519767 970 ntTSL 1 (best)31.38■■■□□ 2.611e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC31.06■■■□□ 2.561e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.561e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC31.06■■■□□ 2.561e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC31.06■■■□□ 2.561e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC31.06■■■□□ 2.561e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.561e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.561e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC31.06■■■□□ 2.561e-6■□□□□ 11.1
DDX55Q8NHQ9 NDUFS3-211ENST00000533507 1769 ntTSL 230.88■■■□□ 2.531e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC29.32■■■□□ 2.281e-6■□□□□ 11.1
DDX55Q8NHQ9 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.811e-6■□□□□ 11.1
DDX55Q8NHQ9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.83e-6■□□□□ 11.1
DDX55Q8NHQ9 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC25.69■■□□□ 1.73e-6■□□□□ 11.1
DDX55Q8NHQ9 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC25.29■■□□□ 1.641e-6■□□□□ 11.1
DDX55Q8NHQ9 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC25.22■■□□□ 1.633e-6■□□□□ 11.1
DDX55Q8NHQ9 HDGF-209ENST00000495212 744 ntTSL 324.76■■□□□ 1.551e-6■□□□□ 11.1
DDX55Q8NHQ9 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.511e-6■□□□□ 11.1
DDX55Q8NHQ9 HDGF-205ENST00000469145 844 ntTSL 223.28■■□□□ 1.321e-6■□□□□ 11.1
DDX55Q8NHQ9 CNN2-209ENST00000568865 1332 ntTSL 523.08■■□□□ 1.292e-15■□□□□ 11.1
DDX55Q8NHQ9 ECHDC2-202ENST00000371520 1606 ntTSL 1 (best)23.08■■□□□ 1.281e-6■□□□□ 11.1
DDX55Q8NHQ9 BUB3-202ENST00000368859 667 ntTSL 3 BASIC22.52■■□□□ 1.21e-22■□□□□ 11.1
DDX55Q8NHQ9 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.141e-22■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC22.13■■□□□ 1.131e-6■□□□□ 11.1
DDX55Q8NHQ9 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC22.12■■□□□ 1.131e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC22.02■■□□□ 1.122e-42■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.26■□□□□ 0.991e-6■□□□□ 11.1
DDX55Q8NHQ9 ECHDC2-220ENST00000498544 985 ntTSL 221.04■□□□□ 0.961e-6■□□□□ 11.1
DDX55Q8NHQ9 ECHDC2-208ENST00000476477 1676 ntTSL 220■□□□□ 0.791e-6■□□□□ 11.1
DDX55Q8NHQ9 NOL4L-208ENST00000475781 1127 ntTSL 519.99■□□□□ 0.791e-6■□□□□ 11.1
DDX55Q8NHQ9 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.731e-6■□□□□ 11.1
DDX55Q8NHQ9 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.661e-6■□□□□ 11.1
DDX55Q8NHQ9 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.95■□□□□ 0.621e-6■□□□□ 11.1
DDX55Q8NHQ9 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.591e-6■□□□□ 11.1
DDX55Q8NHQ9 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.581e-6■□□□□ 11.1
DDX55Q8NHQ9 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.571e-6■□□□□ 11.1
DDX55Q8NHQ9 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.551e-6■□□□□ 11.1
DDX55Q8NHQ9 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.511e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.51e-6■□□□□ 11.1
DDX55Q8NHQ9 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC18.19■□□□□ 0.51e-6■□□□□ 11.1
DDX55Q8NHQ9 HDGF-204ENST00000465180 2060 ntTSL 1 (best)17.89■□□□□ 0.451e-10■□□□□ 11.1
DDX55Q8NHQ9 ECHDC2-204ENST00000460612 2645 ntTSL 217.75■□□□□ 0.431e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-221ENST00000520265 336 ntTSL 517.25■□□□□ 0.352e-42■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC16.76■□□□□ 0.272e-42■□□□□ 11.1
DDX55Q8NHQ9 RABGGTA-209ENST00000559551 2060 ntTSL 516.47■□□□□ 0.231e-6■□□□□ 11.1
DDX55Q8NHQ9 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC16.46■□□□□ 0.231e-6■□□□□ 11.1
DDX55Q8NHQ9 ECHDC2-209ENST00000479183 2356 ntTSL 216.31■□□□□ 0.21e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC16.28■□□□□ 0.22e-42■□□□□ 11.1
DDX55Q8NHQ9 CNN2-206ENST00000564572 2266 nt16.19■□□□□ 0.182e-15■□□□□ 11.1
DDX55Q8NHQ9 HDGF-202ENST00000368206 960 ntTSL 5 BASIC16.17■□□□□ 0.181e-10■□□□□ 11.1
DDX55Q8NHQ9 MRPL37-203ENST00000398219 868 ntTSL 316.07■□□□□ 0.163e-6■□□□□ 11.1
DDX55Q8NHQ9 RABGGTA-212ENST00000559974 1963 ntTSL 515.96■□□□□ 0.151e-6■□□□□ 11.1
DDX55Q8NHQ9 ECHDC2-205ENST00000463923 663 ntTSL 315.78■□□□□ 0.121e-6■□□□□ 11.1
DDX55Q8NHQ9 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.072e-15■□□□□ 11.1
DDX55Q8NHQ9 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC15.5■□□□□ 0.071e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-224ENST00000523873 784 ntTSL 1 (best) BASIC15.43■□□□□ 0.062e-42■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC15.31■□□□□ 0.042e-42■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC15.31■□□□□ 0.042e-42■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.042e-42■□□□□ 11.1
DDX55Q8NHQ9 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC15.31■□□□□ 0.042e-15■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-225ENST00000523950 954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.022e-42■□□□□ 11.1
DDX55Q8NHQ9 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.08■□□□□ 02e-15■□□□□ 11.1
DDX55Q8NHQ9 RABGGTA-220ENST00000560998 1997 ntTSL 514.76□□□□□ -0.051e-6■□□□□ 11.1
DDX55Q8NHQ9 NDUFS3-204ENST00000525378 779 ntTSL 214.71□□□□□ -0.051e-6■□□□□ 11.1
DDX55Q8NHQ9 RABGGTA-218ENST00000560777 1197 ntTSL 5 BASIC14.37□□□□□ -0.111e-6■□□□□ 11.1
DDX55Q8NHQ9 NOL4L-204ENST00000375677 541 ntTSL 314.29□□□□□ -0.121e-6■□□□□ 11.1
DDX55Q8NHQ9 RABGGTA-216ENST00000560243 704 ntTSL 514.28□□□□□ -0.121e-6■□□□□ 11.1
DDX55Q8NHQ9 RABGGTA-204ENST00000558376 1883 ntTSL 514□□□□□ -0.171e-6■□□□□ 11.1
DDX55Q8NHQ9 SORBS3-204ENST00000517962 885 ntTSL 213.94□□□□□ -0.181e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-215ENST00000497139 2746 ntTSL 1 (best)13.9□□□□□ -0.182e-42■□□□□ 11.1
DDX55Q8NHQ9 CNN2-207ENST00000565096 2109 ntTSL 2 BASIC13.73□□□□□ -0.212e-15■□□□□ 11.1
DDX55Q8NHQ9 NOL4L-203ENST00000359676 5991 ntTSL 2 BASIC13.6□□□□□ -0.231e-6■□□□□ 11.1
DDX55Q8NHQ9 IPO5-202ENST00000357602 4335 ntAPPRIS P1 TSL 513.2□□□□□ -0.31e-6■□□□□ 11.1
DDX55Q8NHQ9 RABGGTA-221ENST00000561055 735 ntTSL 211.57□□□□□ -0.561e-6■□□□□ 11.1
DDX55Q8NHQ9 RABGGTA-217ENST00000560521 680 ntTSL 311.5□□□□□ -0.571e-6■□□□□ 11.1
DDX55Q8NHQ9 DST-227ENST00000523292 1724 ntTSL 1 (best)11.45□□□□□ -0.581e-6■□□□□ 11.1
DDX55Q8NHQ9 DST-206ENST00000370788 17657 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.581e-6■□□□□ 11.1
DDX55Q8NHQ9 HDGF-206ENST00000471377 592 ntTSL 311.02□□□□□ -0.651e-6■□□□□ 11.1
DDX55Q8NHQ9 DST-207ENST00000421834 18030 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.661e-6■□□□□ 11.1
DDX55Q8NHQ9 CETN2-201ENST00000370277 1454 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.661e-6■□□□□ 11.1
DDX55Q8NHQ9 HDGF-208ENST00000482651 966 ntTSL 310.73□□□□□ -0.691e-10■□□□□ 11.1
DDX55Q8NHQ9 ECHDC2-224ENST00000543419 555 ntTSL 310.69□□□□□ -0.71e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-212ENST00000480614 12167 ntTSL 1 (best)10.69□□□□□ -0.72e-42■□□□□ 11.1
DDX55Q8NHQ9 ECHDC2-222ENST00000539680 5817 nt10.02□□□□□ -0.811e-6■□□□□ 11.1
DDX55Q8NHQ9 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.861e-6■□□□□ 11.1
DDX55Q8NHQ9 VEGFA-214ENST00000493786 551 ntTSL 29□□□□□ -0.971e-6■□□□□ 11.1
DDX55Q8NHQ9 NDUFS3-205ENST00000527178 269 ntTSL 28.7□□□□□ -1.021e-6■□□□□ 11.1
DDX55Q8NHQ9 NDUFS3-203ENST00000525212 530 ntTSL 28.37□□□□□ -1.071e-6■□□□□ 11.1
DDX55Q8NHQ9 DST-211ENST00000466429 2016 ntTSL 28.34□□□□□ -1.071e-6■□□□□ 11.1
DDX55Q8NHQ9 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC8.32□□□□□ -1.081e-6■□□□□ 11.1
DDX55Q8NHQ9 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC8.13□□□□□ -1.111e-22■□□□□ 11.1
DDX55Q8NHQ9 DST-212ENST00000482156 2857 ntTSL 1 (best)7.99□□□□□ -1.131e-6■□□□□ 11.1
DDX55Q8NHQ9 DST-218ENST00000518464 2967 ntTSL 26.54□□□□□ -1.361e-6■□□□□ 11.1
Retrieved 100 of 15,504 protein–RNA pairs in 235.7 ms