RNA–Protein interactions for RNA: ENST00000518824.5

VEGFA-219, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-219ENST00000518824 NISCHQ9Y2I1 1504 aa32.7■■■□□ 2.83
VEGFA-219ENST00000518824 CCDC180Q9P1Z9 1646 aa29.06■■■□□ 2.24
VEGFA-219ENST00000518824 ABCC9O60706 1549 aa28.68■■■□□ 2.18
VEGFA-219ENST00000518824 RB1CC1Q8TDY2 1594 aa27.41■■□□□ 1.98
VEGFA-219ENST00000518824 DCAF8L2P0C7V8 631 aa27.41■■□□□ 1.98
VEGFA-219ENST00000518824 NACADO15069 1562 aa27.35■■□□□ 1.97
VEGFA-219ENST00000518824 ZCCHC6Q5VYS8 1495 aaKnown RBP27.21■■□□□ 1.95
VEGFA-219ENST00000518824 MYO15BQ96JP2 1530 aa27.1■■□□□ 1.93
VEGFA-219ENST00000518824 DCAF1Q9Y4B6 1507 aa26.96■■□□□ 1.91
VEGFA-219ENST00000518824 UNC13AQ9UPW8 1703 aa26.93■■□□□ 1.9
VEGFA-219ENST00000518824 PABPN1Q86U42 306 aaKnown RBP eCLIP26.8■■□□□ 1.88
VEGFA-219ENST00000518824 BICRAQ9NZM4 1560 aa26.71■■□□□ 1.87
VEGFA-219ENST00000518824 SCRIBQ14160 1630 aa26.61■■□□□ 1.85
VEGFA-219ENST00000518824 DNAJC5BQ9UF47 199 aa26.52■■□□□ 1.84
VEGFA-219ENST00000518824 SHROOM4Q9ULL8 1493 aa26.2■■□□□ 1.78
VEGFA-219ENST00000518824 EIF4G1Q04637 1599 aaKnown RBP25.95■■□□□ 1.75
VEGFA-219ENST00000518824 CC2D2AQ9P2K1 1620 aa25.91■■□□□ 1.74
VEGFA-219ENST00000518824 CECR2Q9BXF3 1484 aa25.72■■□□□ 1.71
VEGFA-219ENST00000518824 SMARCA4P51532 1647 aa25.41■■□□□ 1.66
VEGFA-219ENST00000518824 BAZ1AQ9NRL2 1556 aaPredicted RBP25.3■■□□□ 1.64
VEGFA-219ENST00000518824 ATAD2BQ9ULI0 1458 aa25.29■■□□□ 1.64
VEGFA-219ENST00000518824 MROH2BQ7Z745 1585 aa25.27■■□□□ 1.64
VEGFA-219ENST00000518824 NCAPD3P42695 1498 aa25.26■■□□□ 1.63
VEGFA-219ENST00000518824 SMARCA2P51531 1590 aa25.19■■□□□ 1.62
VEGFA-219ENST00000518824 PEG3Q9GZU2 1588 aa25.11■■□□□ 1.61
VEGFA-219ENST00000518824 HMGXB3Q12766 1538 aa25.11■■□□□ 1.61
VEGFA-219ENST00000518824 BAZ1BQ9UIG0 1483 aaKnown RBP25.05■■□□□ 1.6
VEGFA-219ENST00000518824 WIZO95785 1651 aa25■■□□□ 1.59
VEGFA-219ENST00000518824 RSF1Q96T23 1441 aaPredicted RBP24.89■■□□□ 1.58
VEGFA-219ENST00000518824 NESP48681 1621 aa24.82■■□□□ 1.56
VEGFA-219ENST00000518824 ERCC6Q03468 1493 aa24.64■■□□□ 1.53
VEGFA-219ENST00000518824 TOP2AP11388 1531 aaKnown RBP24.63■■□□□ 1.53
VEGFA-219ENST00000518824 LAMC3Q9Y6N6 1575 aa24.59■■□□□ 1.53
VEGFA-219ENST00000518824 CADPSQ9ULU8 1353 aa24.53■■□□□ 1.52
VEGFA-219ENST00000518824 KIF21AQ7Z4S6 1674 aa24.49■■□□□ 1.51
VEGFA-219ENST00000518824 PDS5BQ9NTI5 1447 aa24.41■■□□□ 1.5
VEGFA-219ENST00000518824 THOC2Q8NI27 1593 aaKnown RBP24.41■■□□□ 1.5
VEGFA-219ENST00000518824 CCDC88BA6NC98 1476 aa24.39■■□□□ 1.5
VEGFA-219ENST00000518824 CUX2O14529 1486 aa24.38■■□□□ 1.49
VEGFA-219ENST00000518824 CFTRP13569 1480 aa24.36■■□□□ 1.49
VEGFA-219ENST00000518824 FANCD2Q9BXW9 1451 aa24.26■■□□□ 1.47
VEGFA-219ENST00000518824 MRC2Q9UBG0 1479 aa24.22■■□□□ 1.47
VEGFA-219ENST00000518824 CEP164Q9UPV0 1460 aa24.22■■□□□ 1.47
VEGFA-219ENST00000518824 SUPT5HO00267 1087 aaKnown RBP24.2■■□□□ 1.46
VEGFA-219ENST00000518824 PRDM2Q13029 1718 aa24.16■■□□□ 1.46
VEGFA-219ENST00000518824 WDR62O43379 1518 aa24.15■■□□□ 1.46
VEGFA-219ENST00000518824 URB2Q14146 1524 aaKnown RBP24.08■■□□□ 1.45
VEGFA-219ENST00000518824 TOPBP1Q92547 1522 aa23.88■■□□□ 1.41
VEGFA-219ENST00000518824 DNAJC5Q9H3Z4 198 aa23.85■■□□□ 1.41
VEGFA-219ENST00000518824 DNMBPQ6XZF7 1577 aa23.81■■□□□ 1.4
VEGFA-219ENST00000518824 ABCC8Q09428 1581 aa23.74■■□□□ 1.39
VEGFA-219ENST00000518824 ZNF608Q9ULD9 1512 aaPredicted RBP23.72■■□□□ 1.39
VEGFA-219ENST00000518824 CUX1P39880 1505 aa23.69■■□□□ 1.38
VEGFA-219ENST00000518824 IFT140Q96RY7 1462 aa23.69■■□□□ 1.38
VEGFA-219ENST00000518824 POLA1P09884 1462 aaPredicted RBP23.67■■□□□ 1.38
VEGFA-219ENST00000518824 TARBP1Q13395 1621 aaKnown RBP23.65■■□□□ 1.38
VEGFA-219ENST00000518824 RAD54L2Q9Y4B4 1467 aa23.62■■□□□ 1.37
VEGFA-219ENST00000518824 FGD5Q6ZNL6 1462 aa23.6■■□□□ 1.37
VEGFA-219ENST00000518824 EIF4G3O43432 1585 aaKnown RBP23.57■■□□□ 1.36
VEGFA-219ENST00000518824 AQRO60306 1485 aaKnown RBP eCLIP23.56■■□□□ 1.363e-9■■■■□ 26.7
VEGFA-219ENST00000518824 SOGA1O94964 1423 aa23.55■■□□□ 1.36
VEGFA-219ENST00000518824 TDRD9Q8NDG6 1382 aaKnown RBP23.48■■□□□ 1.35
VEGFA-219ENST00000518824 SYNJ1O43426 1573 aa23.45■■□□□ 1.34
VEGFA-219ENST00000518824 WRNQ14191 1432 aaPredicted RBP eCLIP23.43■■□□□ 1.341e-6■■■■□ 26.4
VEGFA-219ENST00000518824 WDR97A6NE52 1622 aa23.43■■□□□ 1.34
VEGFA-219ENST00000518824 BIVM-ERCC5R4GMW8 1640 aa23.41■■□□□ 1.34
VEGFA-219ENST00000518824 TOP2BQ02880 1626 aa23.4■■□□□ 1.34
VEGFA-219ENST00000518824 OSCARQ8IYS5 282 aa23.37■■□□□ 1.33
VEGFA-219ENST00000518824 CHD1O14646 1710 aa23.33■■□□□ 1.32
VEGFA-219ENST00000518824 ABCA10Q8WWZ4 1543 aa23.33■■□□□ 1.32
VEGFA-219ENST00000518824 SNAPC4Q5SXM2 1469 aa23.3■■□□□ 1.32
VEGFA-219ENST00000518824 ABCA5Q8WWZ7 1642 aa23.28■■□□□ 1.32
VEGFA-219ENST00000518824 GAPVD1Q14C86 1478 aa23.27■■□□□ 1.32
VEGFA-219ENST00000518824 PBRM1Q86U86 1689 aa23.26■■□□□ 1.31
VEGFA-219ENST00000518824 GRIN2BQ13224 1484 aa23.26■■□□□ 1.31
VEGFA-219ENST00000518824 FBLN2P98095 1184 aa23.25■■□□□ 1.31
VEGFA-219ENST00000518824 MAGI1Q96QZ7 1491 aaPredicted RBP23.19■■□□□ 1.3
VEGFA-219ENST00000518824 SYNJ2O15056 1496 aa23.12■■□□□ 1.29
VEGFA-219ENST00000518824 CHMP7Q8WUX9 453 aaPredicted RBP23.12■■□□□ 1.29
VEGFA-219ENST00000518824 RIMBP3CA6NJZ7 1639 aa23.1■■□□□ 1.29
VEGFA-219ENST00000518824 RIMBP3BA6NNM3 1639 aa23.1■■□□□ 1.29
VEGFA-219ENST00000518824 RIMBP3Q9UFD9 1639 aa23.1■■□□□ 1.29
VEGFA-219ENST00000518824 ADAMTS12P58397 1594 aa23.06■■□□□ 1.28
VEGFA-219ENST00000518824 TRIM41Q8WV44 630 aa23.06■■□□□ 1.28
VEGFA-219ENST00000518824 ARHGEF11O15085 1522 aa23.05■■□□□ 1.28
VEGFA-219ENST00000518824 CLASP1Q7Z460 1538 aa23.04■■□□□ 1.28
VEGFA-219ENST00000518824 ERICH3Q5RHP9 1530 aa23.02■■□□□ 1.28
VEGFA-219ENST00000518824 GRIN2AQ12879 1464 aa22.98■■□□□ 1.27
VEGFA-219ENST00000518824 FHAD1B1AJZ9 1412 aa22.97■■□□□ 1.27
VEGFA-219ENST00000518824 CEP170Q5SW79 1584 aa22.93■■□□□ 1.26
VEGFA-219ENST00000518824 KIF27Q86VH2 1401 aa22.91■■□□□ 1.26
VEGFA-219ENST00000518824 IGF1RP08069 1367 aa22.9■■□□□ 1.26
VEGFA-219ENST00000518824 NUP160Q12769 1436 aa22.9■■□□□ 1.26
VEGFA-219ENST00000518824 ARAP1Q96P48 1450 aa22.89■■□□□ 1.25
VEGFA-219ENST00000518824 CYB5RLQ6IPT4 315 aa22.86■■□□□ 1.25
VEGFA-219ENST00000518824 RUSC2Q8N2Y8 1516 aa22.84■■□□□ 1.25
VEGFA-219ENST00000518824 ERCC6L2Q5T890 1561 aa22.81■■□□□ 1.24
VEGFA-219ENST00000518824 CUL7Q14999 1698 aa22.77■■□□□ 1.24
VEGFA-219ENST00000518824 SHROOM2Q13796 1616 aa22.75■■□□□ 1.23
VEGFA-219ENST00000518824 CARMIL1Q5VZK9 1371 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms