RNA–Protein interactions for RNA: ENST00000480614.1

VEGFA-212, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 12,167 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-212ENST00000480614 DCAF8L2P0C7V8 631 aa15.89■□□□□ 0.13
VEGFA-212ENST00000480614 PELP1Q8IZL8 1130 aaKnown RBP15.49■□□□□ 0.07
VEGFA-212ENST00000480614 SUPT5HO00267 1087 aaKnown RBP15.06■□□□□ 0
VEGFA-212ENST00000480614 NISCHQ9Y2I1 1504 aa14.99□□□□□ -0.01
VEGFA-212ENST00000480614 APLP2Q06481 763 aa14.95□□□□□ -0.02
VEGFA-212ENST00000480614 FAM9AQ8IZU1 332 aaPredicted RBP14.94□□□□□ -0.02
VEGFA-212ENST00000480614 MYT1Q01538 1121 aa14.93□□□□□ -0.02
VEGFA-212ENST00000480614 CCER1Q8TC90 406 aaPredicted RBP14.73□□□□□ -0.05
VEGFA-212ENST00000480614 SHROOM4Q9ULL8 1493 aa14.68□□□□□ -0.06
VEGFA-212ENST00000480614 ERICH6Q7L0X2 663 aa14.61□□□□□ -0.07
VEGFA-212ENST00000480614 CENPBP07199 599 aaPredicted RBP14.55□□□□□ -0.08
VEGFA-212ENST00000480614 EHMT2Q96KQ7 1210 aa14.54□□□□□ -0.08
VEGFA-212ENST00000480614 ZEB1P37275 1124 aaPredicted RBP14.51□□□□□ -0.09
VEGFA-212ENST00000480614 NEFLP07196 543 aa14.36□□□□□ -0.11
VEGFA-212ENST00000480614 PCGF6Q9BYE7 350 aa14.27□□□□□ -0.13
VEGFA-212ENST00000480614 TTBK1Q5TCY1 1321 aaPredicted RBP14.16□□□□□ -0.14
VEGFA-212ENST00000480614 TRIM41Q8WV44 630 aa14.1□□□□□ -0.15
VEGFA-212ENST00000480614 ATP1B4Q9UN42 357 aaPredicted RBP14.1□□□□□ -0.15
VEGFA-212ENST00000480614 YTHDC1Q96MU7 727 aaKnown RBP14.08□□□□□ -0.16
VEGFA-212ENST00000480614 DAXXQ9UER7 740 aaPredicted RBP14.07□□□□□ -0.16
VEGFA-212ENST00000480614 UBTFP17480 764 aaKnown RBP14.07□□□□□ -0.16
VEGFA-212ENST00000480614 RANGAP1P46060 587 aaPredicted RBP14.03□□□□□ -0.16
VEGFA-212ENST00000480614 MYT1LQ9UL68 1186 aa13.73□□□□□ -0.21
VEGFA-212ENST00000480614 TRIM26Q12899 539 aaPredicted RBP13.72□□□□□ -0.21
VEGFA-212ENST00000480614 ZNF316A6NFI3 1004 aaPredicted RBP13.7□□□□□ -0.22
VEGFA-212ENST00000480614 RTL5Q5HYW3 569 aaPredicted RBP13.69□□□□□ -0.22
VEGFA-212ENST00000480614 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.64□□□□□ -0.23
VEGFA-212ENST00000480614 HNRNPUL2Q1KMD3 747 aaKnown RBP13.64□□□□□ -0.23
VEGFA-212ENST00000480614 POLR3GLQ9BT43 218 aa13.63□□□□□ -0.23
VEGFA-212ENST00000480614 HRCP23327 699 aa13.61□□□□□ -0.23
VEGFA-212ENST00000480614 CLSPNQ9HAW4 1339 aa13.57□□□□□ -0.24
VEGFA-212ENST00000480614 ITGAEP38570 1179 aa13.51□□□□□ -0.25
VEGFA-212ENST00000480614 SLC4A1APQ9BWU0 796 aaKnown RBP13.51□□□□□ -0.25
VEGFA-212ENST00000480614 ZBTB47Q9UFB7 747 aaPredicted RBP13.45□□□□□ -0.26
VEGFA-212ENST00000480614 PPARGC1BQ86YN6 1023 aaKnown RBP13.43□□□□□ -0.26
VEGFA-212ENST00000480614 CHIC1Q5VXU3 224 aa13.33□□□□□ -0.28
VEGFA-212ENST00000480614 DIEXFQ68CQ4 756 aaKnown RBP13.3□□□□□ -0.28
VEGFA-212ENST00000480614 CNGB1Q14028 1251 aaPredicted RBP13.28□□□□□ -0.28
VEGFA-212ENST00000480614 NEFMP07197 916 aa13.28□□□□□ -0.28
VEGFA-212ENST00000480614 ANP32CO43423 234 aa13.26□□□□□ -0.29
VEGFA-212ENST00000480614 CDK11AQ9UQ88 783 aaPredicted RBP13.26□□□□□ -0.29
VEGFA-212ENST00000480614 FAM50AQ14320 339 aaKnown RBP13.25□□□□□ -0.29
VEGFA-212ENST00000480614 CANXP27824 592 aaKnown RBP13.24□□□□□ -0.29
VEGFA-212ENST00000480614 TRIM52Q96A61 297 aa13.23□□□□□ -0.29
VEGFA-212ENST00000480614 ANP32BQ92688 251 aaKnown RBP13.15□□□□□ -0.3
VEGFA-212ENST00000480614 ANP32AP39687 249 aaKnown RBP13.13□□□□□ -0.31
VEGFA-212ENST00000480614 LOC105371045A0A1W2PR82 267 aa13.11□□□□□ -0.31
VEGFA-212ENST00000480614 NEUROD1Q13562 356 aa13.09□□□□□ -0.31
VEGFA-212ENST00000480614 ZNF326Q5BKZ1 582 aaKnown RBP13.07□□□□□ -0.32
VEGFA-212ENST00000480614 SLC24A1O60721 1099 aa13.07□□□□□ -0.32
VEGFA-212ENST00000480614 BCANQ96GW7 911 aa13.02□□□□□ -0.33
VEGFA-212ENST00000480614 HSP90AA1P07900 732 aaKnown RBP13.01□□□□□ -0.33
VEGFA-212ENST00000480614 UPF2Q9HAU5 1272 aaKnown RBP13□□□□□ -0.33
VEGFA-212ENST00000480614 GLIPR1L2Q4G1C9 344 aa12.99□□□□□ -0.33
VEGFA-212ENST00000480614 GTF3C3Q9Y5Q9 886 aa12.97□□□□□ -0.33
VEGFA-212ENST00000480614 ESF1Q9H501 851 aaKnown RBP12.95□□□□□ -0.34
VEGFA-212ENST00000480614 ACIN1Q9UKV3 1341 aaKnown RBP12.91□□□□□ -0.34
VEGFA-212ENST00000480614 BCL11AQ9H165 835 aa12.89□□□□□ -0.35
VEGFA-212ENST00000480614 FBLN2P98095 1184 aa12.88□□□□□ -0.35
VEGFA-212ENST00000480614 ABCC9O60706 1549 aa12.86□□□□□ -0.35
VEGFA-212ENST00000480614 TONSLQ96HA7 1378 aa12.85□□□□□ -0.35
VEGFA-212ENST00000480614 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.85□□□□□ -0.35
VEGFA-212ENST00000480614 STAG3Q9UJ98 1225 aa12.82□□□□□ -0.36
VEGFA-212ENST00000480614 CDK11BP21127 795 aaKnown RBP12.82□□□□□ -0.36
VEGFA-212ENST00000480614 NPM2Q86SE8 214 aaKnown RBP12.81□□□□□ -0.36
VEGFA-212ENST00000480614 MYH16Q9H6N6 1097 aa12.78□□□□□ -0.36
VEGFA-212ENST00000480614 PABPN1Q86U42 306 aaKnown RBP eCLIP12.77□□□□□ -0.367e-13■□□□□ 11.3
VEGFA-212ENST00000480614 EIF5BO60841 1220 aaKnown RBP12.76□□□□□ -0.37
VEGFA-212ENST00000480614 ZNF777Q9ULD5 760 aaPredicted RBP12.74□□□□□ -0.37
VEGFA-212ENST00000480614 ANP32EQ9BTT0 268 aa12.74□□□□□ -0.37
VEGFA-212ENST00000480614 DCAF1Q9Y4B6 1507 aa12.72□□□□□ -0.37
VEGFA-212ENST00000480614 CSRNP3Q8WYN3 585 aa12.71□□□□□ -0.37
VEGFA-212ENST00000480614 CCDC180Q9P1Z9 1646 aa12.71□□□□□ -0.37
VEGFA-212ENST00000480614 NPM1P06748 294 aaKnown RBP eCLIP12.7□□□□□ -0.38
VEGFA-212ENST00000480614 CCDC136Q96JN2 1154 aa12.69□□□□□ -0.38
VEGFA-212ENST00000480614 SCRIBQ14160 1630 aa12.69□□□□□ -0.38
VEGFA-212ENST00000480614 WDR43Q15061 677 aaKnown RBP eCLIP12.69□□□□□ -0.388e-10■□□□□ 9.2
VEGFA-212ENST00000480614 BECN1Q14457 450 aa12.67□□□□□ -0.38
VEGFA-212ENST00000480614 HNRNPUQ00839 825 aaKnown RBP eCLIP12.67□□□□□ -0.388e-7■□□□□ 10.9
VEGFA-212ENST00000480614 CHGAP10645 457 aaKnown RBP12.65□□□□□ -0.38
VEGFA-212ENST00000480614 TMC1Q8TDI8 760 aa12.65□□□□□ -0.38
VEGFA-212ENST00000480614 DDRGK1Q96HY6 314 aa12.64□□□□□ -0.39
VEGFA-212ENST00000480614 GOLGA6L22H0YM25 854 aa12.64□□□□□ -0.39
VEGFA-212ENST00000480614 FKBP8Q14318 412 aa12.63□□□□□ -0.39
VEGFA-212ENST00000480614 P3H3Q8IVL6 736 aa12.63□□□□□ -0.39
VEGFA-212ENST00000480614 NCLP19338 710 aaKnown RBP12.63□□□□□ -0.39
VEGFA-212ENST00000480614 ARID3CA6NKF2 412 aa12.61□□□□□ -0.39
VEGFA-212ENST00000480614 TNNT2P45379 298 aaPredicted RBP12.61□□□□□ -0.39
VEGFA-212ENST00000480614 FAM9BQ8IZU0 186 aa12.58□□□□□ -0.4
VEGFA-212ENST00000480614 ZRSR1Q15695 479 aaKnown RBP12.56□□□□□ -0.4
VEGFA-212ENST00000480614 CASC1Q6TDU7 716 aa12.56□□□□□ -0.4
VEGFA-212ENST00000480614 TSPY4P0CV99 314 aa12.56□□□□□ -0.4
VEGFA-212ENST00000480614 TSPY10P0CW01 314 aa12.56□□□□□ -0.4
VEGFA-212ENST00000480614 TRIM44Q96DX7 344 aaPredicted RBP12.54□□□□□ -0.4
VEGFA-212ENST00000480614 MRS2Q9HD23 443 aa12.54□□□□□ -0.4
VEGFA-212ENST00000480614 MTUS2Q5JR59 1369 aa12.52□□□□□ -0.4
VEGFA-212ENST00000480614 CDCA8Q53HL2 280 aa12.52□□□□□ -0.4
VEGFA-212ENST00000480614 DDX10Q13206 875 aaKnown RBP12.51□□□□□ -0.41
VEGFA-212ENST00000480614 NBR1Q14596 966 aa12.51□□□□□ -0.41
VEGFA-212ENST00000480614 RSF1Q96T23 1441 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms