RNA–Protein interactions for RNA: ENST00000539680.1

ECHDC2-222, Transcript of enoyl-CoA hydratase domain containing 2, human

Gene ECHDC2, Length 5,817 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC2-222	ENST00000539680	DCAF8L2	P0C7V8	631 aa		15.19	■□□□□ 0.02
ECHDC2-222	ENST00000539680	NISCH	Q9Y2I1	1504 aa		14.49	□□□□□ -0.09
ECHDC2-222	ENST00000539680	PELP1	Q8IZL8	1130 aa	Known RBP	14.44	□□□□□ -0.1
ECHDC2-222	ENST00000539680	SUPT5H	O00267	1087 aa	Known RBP	14.39	□□□□□ -0.11
ECHDC2-222	ENST00000539680	FAM9A	Q8IZU1	332 aa	Predicted RBP	14.15	□□□□□ -0.14
ECHDC2-222	ENST00000539680	APLP2	Q06481	763 aa		14.14	□□□□□ -0.15
ECHDC2-222	ENST00000539680	SHROOM4	Q9ULL8	1493 aa		14.07	□□□□□ -0.16
ECHDC2-222	ENST00000539680	EHMT2	Q96KQ7	1210 aa		13.86	□□□□□ -0.19
ECHDC2-222	ENST00000539680	CCER1	Q8TC90	406 aa	Predicted RBP	13.78	□□□□□ -0.2
ECHDC2-222	ENST00000539680	ZEB1	P37275	1124 aa	Predicted RBP	13.73	□□□□□ -0.21
ECHDC2-222	ENST00000539680	ERICH6	Q7L0X2	663 aa		13.7	□□□□□ -0.22
ECHDC2-222	ENST00000539680	CENPB	P07199	599 aa	Predicted RBP	13.67	□□□□□ -0.22
ECHDC2-222	ENST00000539680	MYT1	Q01538	1121 aa		13.56	□□□□□ -0.24
ECHDC2-222	ENST00000539680	TRIM41	Q8WV44	630 aa		13.49	□□□□□ -0.25
ECHDC2-222	ENST00000539680	PCGF6	Q9BYE7	350 aa		13.47	□□□□□ -0.25
ECHDC2-222	ENST00000539680	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.45	□□□□□ -0.26
ECHDC2-222	ENST00000539680	NEFL	P07196	543 aa		13.44	□□□□□ -0.26
ECHDC2-222	ENST00000539680	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.42	□□□□□ -0.26
ECHDC2-222	ENST00000539680	UBTF	P17480	764 aa	Known RBP	13.36	□□□□□ -0.27
ECHDC2-222	ENST00000539680	RANGAP1	P46060	587 aa	Predicted RBP	13.36	□□□□□ -0.27
ECHDC2-222	ENST00000539680	DAXX	Q9UER7	740 aa	Predicted RBP	13.14	□□□□□ -0.31
ECHDC2-222	ENST00000539680	TRIM26	Q12899	539 aa	Predicted RBP	13.09	□□□□□ -0.31
ECHDC2-222	ENST00000539680	YTHDC1	Q96MU7	727 aa	Known RBP	13.08	□□□□□ -0.32
ECHDC2-222	ENST00000539680	MYT1L	Q9UL68	1186 aa		13.05	□□□□□ -0.32
ECHDC2-222	ENST00000539680	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.98	□□□□□ -0.33
ECHDC2-222	ENST00000539680	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.98	□□□□□ -0.33
ECHDC2-222	ENST00000539680	POLR3GL	Q9BT43	218 aa		12.89	□□□□□ -0.35
ECHDC2-222	ENST00000539680	ITGAE	P38570	1179 aa		12.85	□□□□□ -0.35
ECHDC2-222	ENST00000539680	PPARGC1B	Q86YN6	1023 aa	Known RBP	12.82	□□□□□ -0.36
ECHDC2-222	ENST00000539680	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.81	□□□□□ -0.36
ECHDC2-222	ENST00000539680	HRC	P23327	699 aa		12.81	□□□□□ -0.36
ECHDC2-222	ENST00000539680	RTL5	Q5HYW3	569 aa	Predicted RBP	12.76	□□□□□ -0.37
ECHDC2-222	ENST00000539680	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.76	□□□□□ -0.37
ECHDC2-222	ENST00000539680	CLSPN	Q9HAW4	1339 aa		12.72	□□□□□ -0.37
ECHDC2-222	ENST00000539680	CHIC1	Q5VXU3	224 aa		12.65	□□□□□ -0.38
ECHDC2-222	ENST00000539680	FAM50A	Q14320	339 aa	Known RBP	12.64	□□□□□ -0.39
ECHDC2-222	ENST00000539680	TRIM52	Q96A61	297 aa		12.64	□□□□□ -0.39
ECHDC2-222	ENST00000539680	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.63	□□□□□ -0.39
ECHDC2-222	ENST00000539680	DIEXF	Q68CQ4	756 aa	Known RBP	12.6	□□□□□ -0.39
ECHDC2-222	ENST00000539680	LOC105371045	A0A1W2PR82	267 aa		12.57	□□□□□ -0.4
ECHDC2-222	ENST00000539680	CNGB1	Q14028	1251 aa	Predicted RBP	12.57	□□□□□ -0.4
ECHDC2-222	ENST00000539680	ANP32C	O43423	234 aa		12.56	□□□□□ -0.4
ECHDC2-222	ENST00000539680	NEFM	P07197	916 aa		12.52	□□□□□ -0.41
ECHDC2-222	ENST00000539680	CDK11A	Q9UQ88	783 aa	Predicted RBP	12.5	□□□□□ -0.41
ECHDC2-222	ENST00000539680	NEUROD1	Q13562	356 aa		12.47	□□□□□ -0.41
ECHDC2-222	ENST00000539680	CANX	P27824	592 aa	Known RBP	12.47	□□□□□ -0.41
ECHDC2-222	ENST00000539680	ABCC9	O60706	1549 aa		12.44	□□□□□ -0.42
ECHDC2-222	ENST00000539680	ZNF326	Q5BKZ1	582 aa	Known RBP	12.39	□□□□□ -0.43
ECHDC2-222	ENST00000539680	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.36	□□□□□ -0.43	8e-7	■□□□□ 10.7
ECHDC2-222	ENST00000539680	BCAN	Q96GW7	911 aa		12.35	□□□□□ -0.43
ECHDC2-222	ENST00000539680	FBLN2	P98095	1184 aa		12.33	□□□□□ -0.44
ECHDC2-222	ENST00000539680	ANP32A	P39687	249 aa	Known RBP	12.33	□□□□□ -0.44
ECHDC2-222	ENST00000539680	SLC24A1	O60721	1099 aa		12.32	□□□□□ -0.44
ECHDC2-222	ENST00000539680	ESF1	Q9H501	851 aa	Known RBP	12.28	□□□□□ -0.44
ECHDC2-222	ENST00000539680	ANP32B	Q92688	251 aa	Known RBP	12.27	□□□□□ -0.44
ECHDC2-222	ENST00000539680	GTF3C3	Q9Y5Q9	886 aa		12.25	□□□□□ -0.45
ECHDC2-222	ENST00000539680	CSRNP3	Q8WYN3	585 aa		12.23	□□□□□ -0.45
ECHDC2-222	ENST00000539680	UPF2	Q9HAU5	1272 aa	Known RBP	12.21	□□□□□ -0.45
ECHDC2-222	ENST00000539680	TONSL	Q96HA7	1378 aa		12.2	□□□□□ -0.46
ECHDC2-222	ENST00000539680	ZNF777	Q9ULD5	760 aa	Predicted RBP	12.19	□□□□□ -0.46
ECHDC2-222	ENST00000539680	STAG3	Q9UJ98	1225 aa		12.17	□□□□□ -0.46
ECHDC2-222	ENST00000539680	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	12.15	□□□□□ -0.46
ECHDC2-222	ENST00000539680	NPM1	P06748	294 aa	Known RBP eCLIP	12.15	□□□□□ -0.46
ECHDC2-222	ENST00000539680	ACIN1	Q9UKV3	1341 aa	Known RBP	12.14	□□□□□ -0.47
ECHDC2-222	ENST00000539680	HSP90AA1	P07900	732 aa	Known RBP	12.14	□□□□□ -0.47
ECHDC2-222	ENST00000539680	P3H3	Q8IVL6	736 aa		12.14	□□□□□ -0.47
ECHDC2-222	ENST00000539680	BCL11A	Q9H165	835 aa		12.11	□□□□□ -0.47
ECHDC2-222	ENST00000539680	SCRIB	Q14160	1630 aa		12.1	□□□□□ -0.47
ECHDC2-222	ENST00000539680	DCAF1	Q9Y4B6	1507 aa		12.08	□□□□□ -0.48
ECHDC2-222	ENST00000539680	NPM2	Q86SE8	214 aa	Known RBP	12.08	□□□□□ -0.48
ECHDC2-222	ENST00000539680	ARID3C	A6NKF2	412 aa		12.07	□□□□□ -0.48
ECHDC2-222	ENST00000539680	CHGA	P10645	457 aa	Known RBP	12.07	□□□□□ -0.48
ECHDC2-222	ENST00000539680	WDR43	Q15061	677 aa	Known RBP eCLIP	12.05	□□□□□ -0.48
ECHDC2-222	ENST00000539680	GLIPR1L2	Q4G1C9	344 aa		12.04	□□□□□ -0.48
ECHDC2-222	ENST00000539680	CCDC180	Q9P1Z9	1646 aa		12.04	□□□□□ -0.48
ECHDC2-222	ENST00000539680	MYH16	Q9H6N6	1097 aa		12.02	□□□□□ -0.49
ECHDC2-222	ENST00000539680	EIF5B	O60841	1220 aa	Known RBP	12.01	□□□□□ -0.49
ECHDC2-222	ENST00000539680	FKBP8	Q14318	412 aa		12.01	□□□□□ -0.49
ECHDC2-222	ENST00000539680	ZCCHC6	Q5VYS8	1495 aa	Known RBP	12	□□□□□ -0.49
ECHDC2-222	ENST00000539680	HNRNPU	Q00839	825 aa	Known RBP eCLIP	12	□□□□□ -0.49
ECHDC2-222	ENST00000539680	TMC1	Q8TDI8	760 aa		11.99	□□□□□ -0.49
ECHDC2-222	ENST00000539680	TSPY4	P0CV99	314 aa		11.98	□□□□□ -0.49
ECHDC2-222	ENST00000539680	TSPY10	P0CW01	314 aa		11.98	□□□□□ -0.49
ECHDC2-222	ENST00000539680	RSF1	Q96T23	1441 aa	Predicted RBP	11.97	□□□□□ -0.49
ECHDC2-222	ENST00000539680	CDK11B	P21127	795 aa	Known RBP	11.96	□□□□□ -0.49
ECHDC2-222	ENST00000539680	FAM9B	Q8IZU0	186 aa		11.96	□□□□□ -0.49
ECHDC2-222	ENST00000539680	CCDC136	Q96JN2	1154 aa		11.95	□□□□□ -0.5
ECHDC2-222	ENST00000539680	DDRGK1	Q96HY6	314 aa		11.95	□□□□□ -0.5
ECHDC2-222	ENST00000539680	MTUS2	Q5JR59	1369 aa		11.95	□□□□□ -0.5
ECHDC2-222	ENST00000539680	ANP32E	Q9BTT0	268 aa		11.93	□□□□□ -0.5
ECHDC2-222	ENST00000539680	EEA1	Q15075	1411 aa		11.92	□□□□□ -0.5
ECHDC2-222	ENST00000539680	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.92	□□□□□ -0.5	3e-6	■□□□□ 9.8
ECHDC2-222	ENST00000539680	RB1CC1	Q8TDY2	1594 aa		11.91	□□□□□ -0.5
ECHDC2-222	ENST00000539680	BECN1	Q14457	450 aa		11.91	□□□□□ -0.5
ECHDC2-222	ENST00000539680	NCL	P19338	710 aa	Known RBP	11.9	□□□□□ -0.5
ECHDC2-222	ENST00000539680	DDX10	Q13206	875 aa	Known RBP	11.9	□□□□□ -0.5
ECHDC2-222	ENST00000539680	CDCA8	Q53HL2	280 aa		11.89	□□□□□ -0.51
ECHDC2-222	ENST00000539680	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.88	□□□□□ -0.51
ECHDC2-222	ENST00000539680	MRS2	Q9HD23	443 aa		11.88	□□□□□ -0.51
ECHDC2-222	ENST00000539680	CHIC2	Q9UKJ5	165 aa		11.86	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms