RNA–Protein interactions for RNA: ENST00000230480.10

VEGFA-201, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 993 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-201ENST00000230480 NISCHQ9Y2I1 1504 aa33.78■■■■□ 3
VEGFA-201ENST00000230480 CCDC180Q9P1Z9 1646 aa29.96■■■□□ 2.39
VEGFA-201ENST00000230480 ABCC9O60706 1549 aa29.36■■■□□ 2.29
VEGFA-201ENST00000230480 NACADO15069 1562 aa28.16■■■□□ 2.1
VEGFA-201ENST00000230480 RB1CC1Q8TDY2 1594 aa28.16■■■□□ 2.1
VEGFA-201ENST00000230480 ZCCHC6Q5VYS8 1495 aaKnown RBP28.13■■■□□ 2.09
VEGFA-201ENST00000230480 DCAF8L2P0C7V8 631 aa28.07■■■□□ 2.08
VEGFA-201ENST00000230480 MYO15BQ96JP2 1530 aa28.02■■■□□ 2.08
VEGFA-201ENST00000230480 DCAF1Q9Y4B6 1507 aa27.92■■■□□ 2.06
VEGFA-201ENST00000230480 UNC13AQ9UPW8 1703 aa27.72■■■□□ 2.03
VEGFA-201ENST00000230480 BICRAQ9NZM4 1560 aa27.53■■■□□ 2
VEGFA-201ENST00000230480 PABPN1Q86U42 306 aaKnown RBP eCLIP27.48■■□□□ 1.99
VEGFA-201ENST00000230480 SCRIBQ14160 1630 aa27.34■■□□□ 1.97
VEGFA-201ENST00000230480 DNAJC5BQ9UF47 199 aa27.19■■□□□ 1.94
VEGFA-201ENST00000230480 SHROOM4Q9ULL8 1493 aa26.99■■□□□ 1.91
VEGFA-201ENST00000230480 EIF4G1Q04637 1599 aaKnown RBP26.67■■□□□ 1.86
VEGFA-201ENST00000230480 CC2D2AQ9P2K1 1620 aa26.58■■□□□ 1.85
VEGFA-201ENST00000230480 CECR2Q9BXF3 1484 aa26.41■■□□□ 1.82
VEGFA-201ENST00000230480 SMARCA4P51532 1647 aa26.19■■□□□ 1.78
VEGFA-201ENST00000230480 MROH2BQ7Z745 1585 aa26.08■■□□□ 1.77
VEGFA-201ENST00000230480 BAZ1AQ9NRL2 1556 aaPredicted RBP26.08■■□□□ 1.77
VEGFA-201ENST00000230480 ATAD2BQ9ULI0 1458 aa26.07■■□□□ 1.76
VEGFA-201ENST00000230480 NCAPD3P42695 1498 aa26.06■■□□□ 1.76
VEGFA-201ENST00000230480 PEG3Q9GZU2 1588 aa25.96■■□□□ 1.75
VEGFA-201ENST00000230480 SMARCA2P51531 1590 aa25.92■■□□□ 1.74
VEGFA-201ENST00000230480 HMGXB3Q12766 1538 aa25.86■■□□□ 1.73
VEGFA-201ENST00000230480 WIZO95785 1651 aa25.79■■□□□ 1.72
VEGFA-201ENST00000230480 RSF1Q96T23 1441 aaPredicted RBP25.77■■□□□ 1.72
VEGFA-201ENST00000230480 BAZ1BQ9UIG0 1483 aaKnown RBP25.74■■□□□ 1.71
VEGFA-201ENST00000230480 NESP48681 1621 aa25.5■■□□□ 1.67
VEGFA-201ENST00000230480 TOP2AP11388 1531 aaKnown RBP25.42■■□□□ 1.66
VEGFA-201ENST00000230480 LAMC3Q9Y6N6 1575 aa25.28■■□□□ 1.64
VEGFA-201ENST00000230480 CADPSQ9ULU8 1353 aa25.26■■□□□ 1.63
VEGFA-201ENST00000230480 CCDC88BA6NC98 1476 aa25.2■■□□□ 1.62
VEGFA-201ENST00000230480 ERCC6Q03468 1493 aa25.15■■□□□ 1.62
VEGFA-201ENST00000230480 CFTRP13569 1480 aa25.14■■□□□ 1.61
VEGFA-201ENST00000230480 KIF21AQ7Z4S6 1674 aa25.13■■□□□ 1.61
VEGFA-201ENST00000230480 THOC2Q8NI27 1593 aaKnown RBP25.06■■□□□ 1.6
VEGFA-201ENST00000230480 PDS5BQ9NTI5 1447 aa25.06■■□□□ 1.6
VEGFA-201ENST00000230480 SUPT5HO00267 1087 aaKnown RBP24.98■■□□□ 1.59
VEGFA-201ENST00000230480 CUX2O14529 1486 aa24.96■■□□□ 1.59
VEGFA-201ENST00000230480 FANCD2Q9BXW9 1451 aa24.95■■□□□ 1.58
VEGFA-201ENST00000230480 PRDM2Q13029 1718 aa24.89■■□□□ 1.58
VEGFA-201ENST00000230480 MRC2Q9UBG0 1479 aa24.86■■□□□ 1.57
VEGFA-201ENST00000230480 CEP164Q9UPV0 1460 aa24.85■■□□□ 1.57
VEGFA-201ENST00000230480 WDR62O43379 1518 aa24.83■■□□□ 1.57
VEGFA-201ENST00000230480 URB2Q14146 1524 aaKnown RBP24.79■■□□□ 1.56
VEGFA-201ENST00000230480 TOPBP1Q92547 1522 aa24.59■■□□□ 1.53
VEGFA-201ENST00000230480 DNAJC5Q9H3Z4 198 aa24.56■■□□□ 1.52
VEGFA-201ENST00000230480 DNMBPQ6XZF7 1577 aa24.51■■□□□ 1.51
VEGFA-201ENST00000230480 ABCC8Q09428 1581 aa24.46■■□□□ 1.51
VEGFA-201ENST00000230480 CUX1P39880 1505 aa24.45■■□□□ 1.5
VEGFA-201ENST00000230480 ZNF608Q9ULD9 1512 aaPredicted RBP24.39■■□□□ 1.49
VEGFA-201ENST00000230480 POLA1P09884 1462 aaPredicted RBP24.38■■□□□ 1.49
VEGFA-201ENST00000230480 TARBP1Q13395 1621 aaKnown RBP24.38■■□□□ 1.49
VEGFA-201ENST00000230480 IFT140Q96RY7 1462 aa24.36■■□□□ 1.49
VEGFA-201ENST00000230480 RAD54L2Q9Y4B4 1467 aa24.32■■□□□ 1.48
VEGFA-201ENST00000230480 FGD5Q6ZNL6 1462 aa24.3■■□□□ 1.48
VEGFA-201ENST00000230480 SOGA1O94964 1423 aa24.24■■□□□ 1.47
VEGFA-201ENST00000230480 SYNJ1O43426 1573 aa24.23■■□□□ 1.47
VEGFA-201ENST00000230480 AQRO60306 1485 aaKnown RBP eCLIP24.22■■□□□ 1.472e-11■■■■■ 27.4
VEGFA-201ENST00000230480 EIF4G3O43432 1585 aaKnown RBP24.2■■□□□ 1.46
VEGFA-201ENST00000230480 WRNQ14191 1432 aaPredicted RBP eCLIP24.18■■□□□ 1.469e-10■□□□□ 8.8
VEGFA-201ENST00000230480 BIVM-ERCC5R4GMW8 1640 aa24.18■■□□□ 1.46
VEGFA-201ENST00000230480 TOP2BQ02880 1626 aa24.17■■□□□ 1.46
VEGFA-201ENST00000230480 WDR97A6NE52 1622 aa24.16■■□□□ 1.46
VEGFA-201ENST00000230480 TDRD9Q8NDG6 1382 aaKnown RBP24.15■■□□□ 1.46
VEGFA-201ENST00000230480 ABCA10Q8WWZ4 1543 aa24.07■■□□□ 1.44
VEGFA-201ENST00000230480 ABCA5Q8WWZ7 1642 aa24■■□□□ 1.43
VEGFA-201ENST00000230480 GAPVD1Q14C86 1478 aa23.94■■□□□ 1.42
VEGFA-201ENST00000230480 OSCARQ8IYS5 282 aa23.94■■□□□ 1.42
VEGFA-201ENST00000230480 CHD1O14646 1710 aa23.93■■□□□ 1.42
VEGFA-201ENST00000230480 SNAPC4Q5SXM2 1469 aa23.93■■□□□ 1.42
VEGFA-201ENST00000230480 GRIN2BQ13224 1484 aa23.92■■□□□ 1.42
VEGFA-201ENST00000230480 PBRM1Q86U86 1689 aa23.91■■□□□ 1.42
VEGFA-201ENST00000230480 MAGI1Q96QZ7 1491 aaPredicted RBP23.85■■□□□ 1.41
VEGFA-201ENST00000230480 SYNJ2O15056 1496 aa23.78■■□□□ 1.4
VEGFA-201ENST00000230480 FBLN2P98095 1184 aa23.76■■□□□ 1.39
VEGFA-201ENST00000230480 ERICH3Q5RHP9 1530 aa23.74■■□□□ 1.39
VEGFA-201ENST00000230480 ADAMTS12P58397 1594 aa23.74■■□□□ 1.39
VEGFA-201ENST00000230480 CHMP7Q8WUX9 453 aaPredicted RBP23.71■■□□□ 1.39
VEGFA-201ENST00000230480 CLASP1Q7Z460 1538 aa23.7■■□□□ 1.38
VEGFA-201ENST00000230480 IGF1RP08069 1367 aa23.69■■□□□ 1.38
VEGFA-201ENST00000230480 FHAD1B1AJZ9 1412 aa23.66■■□□□ 1.38
VEGFA-201ENST00000230480 RUSC2Q8N2Y8 1516 aa23.65■■□□□ 1.38
VEGFA-201ENST00000230480 GRIN2AQ12879 1464 aa23.65■■□□□ 1.38
VEGFA-201ENST00000230480 RIMBP3CA6NJZ7 1639 aa23.63■■□□□ 1.37
VEGFA-201ENST00000230480 RIMBP3BA6NNM3 1639 aa23.63■■□□□ 1.37
VEGFA-201ENST00000230480 RIMBP3Q9UFD9 1639 aa23.63■■□□□ 1.37
VEGFA-201ENST00000230480 KIF27Q86VH2 1401 aa23.63■■□□□ 1.37
VEGFA-201ENST00000230480 ARHGEF11O15085 1522 aa23.61■■□□□ 1.37
VEGFA-201ENST00000230480 CEP170Q5SW79 1584 aa23.61■■□□□ 1.37
VEGFA-201ENST00000230480 NUP160Q12769 1436 aa23.59■■□□□ 1.37
VEGFA-201ENST00000230480 TRIM41Q8WV44 630 aa23.54■■□□□ 1.36
VEGFA-201ENST00000230480 CUL7Q14999 1698 aa23.48■■□□□ 1.35
VEGFA-201ENST00000230480 ERCC6L2Q5T890 1561 aa23.46■■□□□ 1.35
VEGFA-201ENST00000230480 CARMIL1Q5VZK9 1371 aa23.46■■□□□ 1.35
VEGFA-201ENST00000230480 ARAP1Q96P48 1450 aa23.46■■□□□ 1.35
VEGFA-201ENST00000230480 SHROOM2Q13796 1616 aa23.44■■□□□ 1.34
VEGFA-201ENST00000230480 CHIC1Q5VXU3 224 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms