RNA–Protein interactions for RNA: ENST00000493786.2

VEGFA-214, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 551 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-214ENST00000493786 NISCHQ9Y2I1 1504 aa17.92■□□□□ 0.46
VEGFA-214ENST00000493786 CCDC180Q9P1Z9 1646 aa15.83■□□□□ 0.13
VEGFA-214ENST00000493786 ABCC9O60706 1549 aa15.32■□□□□ 0.04
VEGFA-214ENST00000493786 ZCCHC6Q5VYS8 1495 aaKnown RBP14.97□□□□□ -0.01
VEGFA-214ENST00000493786 DCAF8L2P0C7V8 631 aa14.97□□□□□ -0.01
VEGFA-214ENST00000493786 NACADO15069 1562 aa14.85□□□□□ -0.03
VEGFA-214ENST00000493786 RB1CC1Q8TDY2 1594 aa14.84□□□□□ -0.03
VEGFA-214ENST00000493786 DCAF1Q9Y4B6 1507 aa14.83□□□□□ -0.04
VEGFA-214ENST00000493786 MYO15BQ96JP2 1530 aa14.82□□□□□ -0.04
VEGFA-214ENST00000493786 SCRIBQ14160 1630 aa14.49□□□□□ -0.09
VEGFA-214ENST00000493786 UNC13AQ9UPW8 1703 aa14.41□□□□□ -0.1
VEGFA-214ENST00000493786 PABPN1Q86U42 306 aaKnown RBP eCLIP14.36□□□□□ -0.11
VEGFA-214ENST00000493786 SHROOM4Q9ULL8 1493 aa14.33□□□□□ -0.12
VEGFA-214ENST00000493786 BICRAQ9NZM4 1560 aa14.3□□□□□ -0.12
VEGFA-214ENST00000493786 EIF4G1Q04637 1599 aaKnown RBP13.96□□□□□ -0.18
VEGFA-214ENST00000493786 CECR2Q9BXF3 1484 aa13.92□□□□□ -0.18
VEGFA-214ENST00000493786 BAZ1AQ9NRL2 1556 aaPredicted RBP13.9□□□□□ -0.18
VEGFA-214ENST00000493786 SMARCA4P51532 1647 aa13.86□□□□□ -0.19
VEGFA-214ENST00000493786 CC2D2AQ9P2K1 1620 aa13.84□□□□□ -0.19
VEGFA-214ENST00000493786 DNAJC5BQ9UF47 199 aa13.81□□□□□ -0.2
VEGFA-214ENST00000493786 MROH2BQ7Z745 1585 aa13.8□□□□□ -0.2
VEGFA-214ENST00000493786 SMARCA2P51531 1590 aa13.76□□□□□ -0.21
VEGFA-214ENST00000493786 ATAD2BQ9ULI0 1458 aa13.74□□□□□ -0.21
VEGFA-214ENST00000493786 RSF1Q96T23 1441 aaPredicted RBP13.73□□□□□ -0.21
VEGFA-214ENST00000493786 PEG3Q9GZU2 1588 aa13.71□□□□□ -0.22
VEGFA-214ENST00000493786 NCAPD3P42695 1498 aa13.69□□□□□ -0.22
VEGFA-214ENST00000493786 BAZ1BQ9UIG0 1483 aaKnown RBP13.67□□□□□ -0.22
VEGFA-214ENST00000493786 HMGXB3Q12766 1538 aa13.66□□□□□ -0.22
VEGFA-214ENST00000493786 WIZO95785 1651 aa13.66□□□□□ -0.22
VEGFA-214ENST00000493786 SUPT5HO00267 1087 aaKnown RBP13.61□□□□□ -0.23
VEGFA-214ENST00000493786 TOP2AP11388 1531 aaKnown RBP13.56□□□□□ -0.24
VEGFA-214ENST00000493786 CCDC88BA6NC98 1476 aa13.38□□□□□ -0.27
VEGFA-214ENST00000493786 CADPSQ9ULU8 1353 aa13.33□□□□□ -0.27
VEGFA-214ENST00000493786 LAMC3Q9Y6N6 1575 aa13.32□□□□□ -0.28
VEGFA-214ENST00000493786 NESP48681 1621 aa13.29□□□□□ -0.28
VEGFA-214ENST00000493786 CFTRP13569 1480 aa13.28□□□□□ -0.28
VEGFA-214ENST00000493786 PDS5BQ9NTI5 1447 aa13.26□□□□□ -0.29
VEGFA-214ENST00000493786 ERCC6Q03468 1493 aa13.24□□□□□ -0.29
VEGFA-214ENST00000493786 FANCD2Q9BXW9 1451 aa13.18□□□□□ -0.3
VEGFA-214ENST00000493786 CEP164Q9UPV0 1460 aa13.16□□□□□ -0.3
VEGFA-214ENST00000493786 PRDM2Q13029 1718 aa13.16□□□□□ -0.3
VEGFA-214ENST00000493786 KIF21AQ7Z4S6 1674 aa13.12□□□□□ -0.31
VEGFA-214ENST00000493786 MRC2Q9UBG0 1479 aa13.09□□□□□ -0.31
VEGFA-214ENST00000493786 THOC2Q8NI27 1593 aaKnown RBP13.03□□□□□ -0.32
VEGFA-214ENST00000493786 ABCC8Q09428 1581 aa13.03□□□□□ -0.32
VEGFA-214ENST00000493786 WDR62O43379 1518 aa13.01□□□□□ -0.33
VEGFA-214ENST00000493786 URB2Q14146 1524 aaKnown RBP13.01□□□□□ -0.33
VEGFA-214ENST00000493786 CUX2O14529 1486 aa12.99□□□□□ -0.33
VEGFA-214ENST00000493786 DNMBPQ6XZF7 1577 aa12.98□□□□□ -0.33
VEGFA-214ENST00000493786 WRNQ14191 1432 aaPredicted RBP eCLIP12.98□□□□□ -0.339e-10■□□□□ 8.8
VEGFA-214ENST00000493786 TOPBP1Q92547 1522 aa12.98□□□□□ -0.33
VEGFA-214ENST00000493786 CUX1P39880 1505 aa12.94□□□□□ -0.34
VEGFA-214ENST00000493786 TOP2BQ02880 1626 aa12.9□□□□□ -0.34
VEGFA-214ENST00000493786 FGD5Q6ZNL6 1462 aa12.89□□□□□ -0.35
VEGFA-214ENST00000493786 SYNJ1O43426 1573 aa12.89□□□□□ -0.35
VEGFA-214ENST00000493786 POLA1P09884 1462 aaPredicted RBP12.88□□□□□ -0.35
VEGFA-214ENST00000493786 IFT140Q96RY7 1462 aa12.88□□□□□ -0.35
VEGFA-214ENST00000493786 BIVM-ERCC5R4GMW8 1640 aa12.88□□□□□ -0.35
VEGFA-214ENST00000493786 SOGA1O94964 1423 aa12.86□□□□□ -0.35
VEGFA-214ENST00000493786 TRIM41Q8WV44 630 aa12.85□□□□□ -0.35
VEGFA-214ENST00000493786 RAD54L2Q9Y4B4 1467 aa12.82□□□□□ -0.36
VEGFA-214ENST00000493786 TARBP1Q13395 1621 aaKnown RBP12.78□□□□□ -0.36
VEGFA-214ENST00000493786 CHIC1Q5VXU3 224 aa12.78□□□□□ -0.36
VEGFA-214ENST00000493786 ABCA10Q8WWZ4 1543 aa12.78□□□□□ -0.36
VEGFA-214ENST00000493786 ZNF608Q9ULD9 1512 aaPredicted RBP12.76□□□□□ -0.37
VEGFA-214ENST00000493786 WDR97A6NE52 1622 aa12.75□□□□□ -0.37
VEGFA-214ENST00000493786 TDRD9Q8NDG6 1382 aaKnown RBP12.75□□□□□ -0.37
VEGFA-214ENST00000493786 EIF4G3O43432 1585 aaKnown RBP12.73□□□□□ -0.37
VEGFA-214ENST00000493786 AQRO60306 1485 aaKnown RBP eCLIP12.72□□□□□ -0.373e-11■■■■■ 29.8
VEGFA-214ENST00000493786 GAPVD1Q14C86 1478 aa12.71□□□□□ -0.38
VEGFA-214ENST00000493786 KIF27Q86VH2 1401 aa12.71□□□□□ -0.38
VEGFA-214ENST00000493786 GRIN2BQ13224 1484 aa12.69□□□□□ -0.38
VEGFA-214ENST00000493786 ABCA5Q8WWZ7 1642 aa12.68□□□□□ -0.38
VEGFA-214ENST00000493786 SNAPC4Q5SXM2 1469 aa12.64□□□□□ -0.39
VEGFA-214ENST00000493786 ERICH3Q5RHP9 1530 aa12.63□□□□□ -0.39
VEGFA-214ENST00000493786 MAGI1Q96QZ7 1491 aaPredicted RBP12.63□□□□□ -0.39
VEGFA-214ENST00000493786 PBRM1Q86U86 1689 aa12.63□□□□□ -0.39
VEGFA-214ENST00000493786 EEA1Q15075 1411 aa12.62□□□□□ -0.39
VEGFA-214ENST00000493786 FBLN2P98095 1184 aa12.6□□□□□ -0.39
VEGFA-214ENST00000493786 CHMP7Q8WUX9 453 aaPredicted RBP12.59□□□□□ -0.39
VEGFA-214ENST00000493786 IGF1RP08069 1367 aa12.58□□□□□ -0.4
VEGFA-214ENST00000493786 FHAD1B1AJZ9 1412 aa12.58□□□□□ -0.4
VEGFA-214ENST00000493786 RUSC2Q8N2Y8 1516 aa12.57□□□□□ -0.4
VEGFA-214ENST00000493786 FAM9AQ8IZU1 332 aaPredicted RBP12.57□□□□□ -0.4
VEGFA-214ENST00000493786 SYNJ2O15056 1496 aa12.57□□□□□ -0.4
VEGFA-214ENST00000493786 ADAMTS12P58397 1594 aa12.56□□□□□ -0.4
VEGFA-214ENST00000493786 CUL7Q14999 1698 aa12.56□□□□□ -0.4
VEGFA-214ENST00000493786 CSRNP3Q8WYN3 585 aa12.55□□□□□ -0.4
VEGFA-214ENST00000493786 CARMIL1Q5VZK9 1371 aa12.55□□□□□ -0.4
VEGFA-214ENST00000493786 OSCARQ8IYS5 282 aa12.51□□□□□ -0.41
VEGFA-214ENST00000493786 GRIN2AQ12879 1464 aa12.51□□□□□ -0.41
VEGFA-214ENST00000493786 RAPGEF2Q9Y4G8 1499 aa12.5□□□□□ -0.41
VEGFA-214ENST00000493786 CHD1O14646 1710 aa12.5□□□□□ -0.41
VEGFA-214ENST00000493786 PRXQ9BXM0 1461 aa12.47□□□□□ -0.41
VEGFA-214ENST00000493786 AEBP2Q6ZN18 517 aaPredicted RBP12.44□□□□□ -0.42
VEGFA-214ENST00000493786 NUP160Q12769 1436 aa12.43□□□□□ -0.42
VEGFA-214ENST00000493786 KIF21BO75037 1637 aa12.42□□□□□ -0.42
VEGFA-214ENST00000493786 CEP170Q5SW79 1584 aa12.41□□□□□ -0.42
VEGFA-214ENST00000493786 GOLGA3Q08378 1498 aa12.4□□□□□ -0.42
VEGFA-214ENST00000493786 EHMT2Q96KQ7 1210 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms