RNA–Protein interactions for RNA: ENST00000520265.1

VEGFA-221, Transcript of vascular endothelial growth factor A, humanhuman

TSL 5

Gene VEGFA, Length 336 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-221ENST00000520265 NISCHQ9Y2I1 1504 aa34.4■■■■□ 3.1
VEGFA-221ENST00000520265 CCDC180Q9P1Z9 1646 aa30.65■■■□□ 2.5
VEGFA-221ENST00000520265 ABCC9O60706 1549 aa30.27■■■□□ 2.44
VEGFA-221ENST00000520265 DCAF8L2P0C7V8 631 aa29.06■■■□□ 2.24
VEGFA-221ENST00000520265 RB1CC1Q8TDY2 1594 aa28.97■■■□□ 2.23
VEGFA-221ENST00000520265 NACADO15069 1562 aa28.85■■■□□ 2.21
VEGFA-221ENST00000520265 ZCCHC6Q5VYS8 1495 aaKnown RBP28.62■■■□□ 2.17
VEGFA-221ENST00000520265 MYO15BQ96JP2 1530 aa28.51■■■□□ 2.15
VEGFA-221ENST00000520265 DCAF1Q9Y4B6 1507 aa28.36■■■□□ 2.13
VEGFA-221ENST00000520265 UNC13AQ9UPW8 1703 aa28.29■■■□□ 2.12
VEGFA-221ENST00000520265 PABPN1Q86U42 306 aaKnown RBP eCLIP28.27■■■□□ 2.12
VEGFA-221ENST00000520265 SCRIBQ14160 1630 aa28.1■■■□□ 2.09
VEGFA-221ENST00000520265 BICRAQ9NZM4 1560 aa28.02■■■□□ 2.08
VEGFA-221ENST00000520265 DNAJC5BQ9UF47 199 aa27.79■■■□□ 2.04
VEGFA-221ENST00000520265 SHROOM4Q9ULL8 1493 aa27.68■■■□□ 2.02
VEGFA-221ENST00000520265 EIF4G1Q04637 1599 aaKnown RBP27.36■■□□□ 1.97
VEGFA-221ENST00000520265 CC2D2AQ9P2K1 1620 aa27.3■■□□□ 1.96
VEGFA-221ENST00000520265 CECR2Q9BXF3 1484 aa27.17■■□□□ 1.94
VEGFA-221ENST00000520265 SMARCA4P51532 1647 aa26.76■■□□□ 1.87
VEGFA-221ENST00000520265 BAZ1AQ9NRL2 1556 aaPredicted RBP26.71■■□□□ 1.87
VEGFA-221ENST00000520265 ATAD2BQ9ULI0 1458 aa26.62■■□□□ 1.85
VEGFA-221ENST00000520265 SMARCA2P51531 1590 aa26.61■■□□□ 1.85
VEGFA-221ENST00000520265 NCAPD3P42695 1498 aa26.57■■□□□ 1.84
VEGFA-221ENST00000520265 MROH2BQ7Z745 1585 aa26.54■■□□□ 1.84
VEGFA-221ENST00000520265 BAZ1BQ9UIG0 1483 aaKnown RBP26.49■■□□□ 1.83
VEGFA-221ENST00000520265 HMGXB3Q12766 1538 aa26.47■■□□□ 1.83
VEGFA-221ENST00000520265 PEG3Q9GZU2 1588 aa26.39■■□□□ 1.82
VEGFA-221ENST00000520265 WIZO95785 1651 aa26.28■■□□□ 1.8
VEGFA-221ENST00000520265 ERCC6Q03468 1493 aa26.16■■□□□ 1.78
VEGFA-221ENST00000520265 RSF1Q96T23 1441 aaPredicted RBP26.15■■□□□ 1.78
VEGFA-221ENST00000520265 NESP48681 1621 aa26.1■■□□□ 1.77
VEGFA-221ENST00000520265 LAMC3Q9Y6N6 1575 aa25.97■■□□□ 1.75
VEGFA-221ENST00000520265 TOP2AP11388 1531 aaKnown RBP25.97■■□□□ 1.75
VEGFA-221ENST00000520265 CADPSQ9ULU8 1353 aa25.85■■□□□ 1.73
VEGFA-221ENST00000520265 PDS5BQ9NTI5 1447 aa25.83■■□□□ 1.73
VEGFA-221ENST00000520265 KIF21AQ7Z4S6 1674 aa25.8■■□□□ 1.72
VEGFA-221ENST00000520265 CUX2O14529 1486 aa25.79■■□□□ 1.72
VEGFA-221ENST00000520265 THOC2Q8NI27 1593 aaKnown RBP25.69■■□□□ 1.7
VEGFA-221ENST00000520265 CCDC88BA6NC98 1476 aa25.66■■□□□ 1.7
VEGFA-221ENST00000520265 CFTRP13569 1480 aa25.64■■□□□ 1.69
VEGFA-221ENST00000520265 CEP164Q9UPV0 1460 aa25.62■■□□□ 1.69
VEGFA-221ENST00000520265 FANCD2Q9BXW9 1451 aa25.61■■□□□ 1.69
VEGFA-221ENST00000520265 SUPT5HO00267 1087 aaKnown RBP25.59■■□□□ 1.69
VEGFA-221ENST00000520265 MRC2Q9UBG0 1479 aa25.59■■□□□ 1.69
VEGFA-221ENST00000520265 PRDM2Q13029 1718 aa25.49■■□□□ 1.67
VEGFA-221ENST00000520265 WDR62O43379 1518 aa25.46■■□□□ 1.67
VEGFA-221ENST00000520265 URB2Q14146 1524 aaKnown RBP25.33■■□□□ 1.65
VEGFA-221ENST00000520265 TOPBP1Q92547 1522 aa25.17■■□□□ 1.62
VEGFA-221ENST00000520265 DNAJC5Q9H3Z4 198 aa25.15■■□□□ 1.62
VEGFA-221ENST00000520265 DNMBPQ6XZF7 1577 aa25.13■■□□□ 1.61
VEGFA-221ENST00000520265 ABCC8Q09428 1581 aa25.12■■□□□ 1.61
VEGFA-221ENST00000520265 IFT140Q96RY7 1462 aa25.04■■□□□ 1.6
VEGFA-221ENST00000520265 ZNF608Q9ULD9 1512 aaPredicted RBP24.96■■□□□ 1.59
VEGFA-221ENST00000520265 POLA1P09884 1462 aaPredicted RBP24.94■■□□□ 1.58
VEGFA-221ENST00000520265 CUX1P39880 1505 aa24.91■■□□□ 1.58
VEGFA-221ENST00000520265 FGD5Q6ZNL6 1462 aa24.89■■□□□ 1.58
VEGFA-221ENST00000520265 EIF4G3O43432 1585 aaKnown RBP24.88■■□□□ 1.57
VEGFA-221ENST00000520265 RAD54L2Q9Y4B4 1467 aa24.87■■□□□ 1.57
VEGFA-221ENST00000520265 TARBP1Q13395 1621 aaKnown RBP24.86■■□□□ 1.57
VEGFA-221ENST00000520265 SOGA1O94964 1423 aa24.86■■□□□ 1.57
VEGFA-221ENST00000520265 AQRO60306 1485 aaKnown RBP eCLIP24.81■■□□□ 1.562e-11■■■■■ 27.2
VEGFA-221ENST00000520265 TDRD9Q8NDG6 1382 aaKnown RBP24.76■■□□□ 1.55
VEGFA-221ENST00000520265 OSCARQ8IYS5 282 aa24.74■■□□□ 1.55
VEGFA-221ENST00000520265 WRNQ14191 1432 aaPredicted RBP eCLIP24.73■■□□□ 1.559e-10■□□□□ 8.8
VEGFA-221ENST00000520265 FBLN2P98095 1184 aa24.69■■□□□ 1.54
VEGFA-221ENST00000520265 SYNJ1O43426 1573 aa24.67■■□□□ 1.54
VEGFA-221ENST00000520265 TOP2BQ02880 1626 aa24.64■■□□□ 1.54
VEGFA-221ENST00000520265 BIVM-ERCC5R4GMW8 1640 aa24.64■■□□□ 1.53
VEGFA-221ENST00000520265 WDR97A6NE52 1622 aa24.63■■□□□ 1.53
VEGFA-221ENST00000520265 SNAPC4Q5SXM2 1469 aa24.61■■□□□ 1.53
VEGFA-221ENST00000520265 CHD1O14646 1710 aa24.61■■□□□ 1.53
VEGFA-221ENST00000520265 ABCA10Q8WWZ4 1543 aa24.58■■□□□ 1.53
VEGFA-221ENST00000520265 GRIN2BQ13224 1484 aa24.58■■□□□ 1.52
VEGFA-221ENST00000520265 GAPVD1Q14C86 1478 aa24.57■■□□□ 1.52
VEGFA-221ENST00000520265 PBRM1Q86U86 1689 aa24.56■■□□□ 1.52
VEGFA-221ENST00000520265 ABCA5Q8WWZ7 1642 aa24.51■■□□□ 1.51
VEGFA-221ENST00000520265 CHMP7Q8WUX9 453 aaPredicted RBP24.51■■□□□ 1.51
VEGFA-221ENST00000520265 MAGI1Q96QZ7 1491 aaPredicted RBP24.51■■□□□ 1.51
VEGFA-221ENST00000520265 TRIM41Q8WV44 630 aa24.49■■□□□ 1.51
VEGFA-221ENST00000520265 SYNJ2O15056 1496 aa24.43■■□□□ 1.5
VEGFA-221ENST00000520265 RIMBP3CA6NJZ7 1639 aa24.36■■□□□ 1.49
VEGFA-221ENST00000520265 RIMBP3BA6NNM3 1639 aa24.36■■□□□ 1.49
VEGFA-221ENST00000520265 RIMBP3Q9UFD9 1639 aa24.36■■□□□ 1.49
VEGFA-221ENST00000520265 ARHGEF11O15085 1522 aa24.33■■□□□ 1.49
VEGFA-221ENST00000520265 ADAMTS12P58397 1594 aa24.33■■□□□ 1.48
VEGFA-221ENST00000520265 ERICH3Q5RHP9 1530 aa24.29■■□□□ 1.48
VEGFA-221ENST00000520265 FHAD1B1AJZ9 1412 aa24.26■■□□□ 1.47
VEGFA-221ENST00000520265 GRIN2AQ12879 1464 aa24.26■■□□□ 1.47
VEGFA-221ENST00000520265 CLASP1Q7Z460 1538 aa24.25■■□□□ 1.47
VEGFA-221ENST00000520265 KIF27Q86VH2 1401 aa24.24■■□□□ 1.47
VEGFA-221ENST00000520265 CYB5RLQ6IPT4 315 aa24.18■■□□□ 1.46
VEGFA-221ENST00000520265 CEP170Q5SW79 1584 aa24.15■■□□□ 1.46
VEGFA-221ENST00000520265 ARAP1Q96P48 1450 aa24.12■■□□□ 1.45
VEGFA-221ENST00000520265 NUP160Q12769 1436 aa24.1■■□□□ 1.45
VEGFA-221ENST00000520265 CUL7Q14999 1698 aa24.08■■□□□ 1.45
VEGFA-221ENST00000520265 IGF1RP08069 1367 aa24.07■■□□□ 1.44
VEGFA-221ENST00000520265 CARMIL1Q5VZK9 1371 aa24■■□□□ 1.43
VEGFA-221ENST00000520265 RUSC2Q8N2Y8 1516 aa23.97■■□□□ 1.43
VEGFA-221ENST00000520265 ERCC6L2Q5T890 1561 aa23.96■■□□□ 1.43
VEGFA-221ENST00000520265 SHROOM2Q13796 1616 aa23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms