RNA–Protein interactions for RNA: ENST00000560998.5

RABGGTA-220, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 5

Gene RABGGTA, Length 1,997 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-220ENST00000560998 NISCHQ9Y2I1 1504 aa29.46■■■□□ 2.31
RABGGTA-220ENST00000560998 CCDC180Q9P1Z9 1646 aa25.36■■□□□ 1.65
RABGGTA-220ENST00000560998 ZCCHC6Q5VYS8 1495 aaKnown RBP24.87■■□□□ 1.57
RABGGTA-220ENST00000560998 SHROOM4Q9ULL8 1493 aa24.57■■□□□ 1.52
RABGGTA-220ENST00000560998 DCAF1Q9Y4B6 1507 aa24.3■■□□□ 1.48
RABGGTA-220ENST00000560998 DCAF8L2P0C7V8 631 aa24.21■■□□□ 1.47
RABGGTA-220ENST00000560998 SUPT5HO00267 1087 aaKnown RBP23.92■■□□□ 1.42
RABGGTA-220ENST00000560998 MYO15BQ96JP2 1530 aa23.76■■□□□ 1.39
RABGGTA-220ENST00000560998 ABCC9O60706 1549 aa23.54■■□□□ 1.36
RABGGTA-220ENST00000560998 SCRIBQ14160 1630 aa23.5■■□□□ 1.35
RABGGTA-220ENST00000560998 NACADO15069 1562 aa23.48■■□□□ 1.35
RABGGTA-220ENST00000560998 HRCP23327 699 aa23.29■■□□□ 1.32
RABGGTA-220ENST00000560998 CHIC1Q5VXU3 224 aa23.2■■□□□ 1.3
RABGGTA-220ENST00000560998 RB1CC1Q8TDY2 1594 aa23.14■■□□□ 1.3
RABGGTA-220ENST00000560998 RSF1Q96T23 1441 aaPredicted RBP23.12■■□□□ 1.29
RABGGTA-220ENST00000560998 PELP1Q8IZL8 1130 aaKnown RBP23■■□□□ 1.27
RABGGTA-220ENST00000560998 CECR2Q9BXF3 1484 aa22.9■■□□□ 1.26
RABGGTA-220ENST00000560998 MROH2BQ7Z745 1585 aa22.83■■□□□ 1.24
RABGGTA-220ENST00000560998 UNC13AQ9UPW8 1703 aa22.79■■□□□ 1.24
RABGGTA-220ENST00000560998 WIZO95785 1651 aa22.69■■□□□ 1.22
RABGGTA-220ENST00000560998 BAZ1AQ9NRL2 1556 aaPredicted RBP22.68■■□□□ 1.22
RABGGTA-220ENST00000560998 SMARCA4P51532 1647 aa22.53■■□□□ 1.2
RABGGTA-220ENST00000560998 BICRAQ9NZM4 1560 aa22.5■■□□□ 1.19
RABGGTA-220ENST00000560998 PCGF6Q9BYE7 350 aa22.48■■□□□ 1.19
RABGGTA-220ENST00000560998 PPARGC1BQ86YN6 1023 aaKnown RBP22.42■■□□□ 1.18
RABGGTA-220ENST00000560998 TOP2AP11388 1531 aaKnown RBP22.41■■□□□ 1.18
RABGGTA-220ENST00000560998 TRIM41Q8WV44 630 aa22.39■■□□□ 1.18
RABGGTA-220ENST00000560998 LOC105371045A0A1W2PR82 267 aa22.39■■□□□ 1.17
RABGGTA-220ENST00000560998 PABPN1Q86U42 306 aaKnown RBP eCLIP22.36■■□□□ 1.174e-10■■■□□ 15
RABGGTA-220ENST00000560998 EIF4G1Q04637 1599 aaKnown RBP22.33■■□□□ 1.16
RABGGTA-220ENST00000560998 MYT1Q01538 1121 aa22.29■■□□□ 1.16
RABGGTA-220ENST00000560998 SMARCA2P51531 1590 aa22.25■■□□□ 1.15
RABGGTA-220ENST00000560998 CCDC88BA6NC98 1476 aa22.23■■□□□ 1.15
RABGGTA-220ENST00000560998 PEG3Q9GZU2 1588 aa22.18■■□□□ 1.14
RABGGTA-220ENST00000560998 FAM9AQ8IZU1 332 aaPredicted RBP22.08■■□□□ 1.12
RABGGTA-220ENST00000560998 ZEB1P37275 1124 aaPredicted RBP22.07■■□□□ 1.12
RABGGTA-220ENST00000560998 ATAD2BQ9ULI0 1458 aa22■■□□□ 1.11
RABGGTA-220ENST00000560998 TRIM26Q12899 539 aaPredicted RBP21.99■■□□□ 1.11
RABGGTA-220ENST00000560998 ABCC8Q09428 1581 aa21.99■■□□□ 1.11
RABGGTA-220ENST00000560998 SCAF1Q9H7N4 1312 aaKnown RBP21.96■■□□□ 1.11
RABGGTA-220ENST00000560998 BAZ1BQ9UIG0 1483 aaKnown RBP21.91■■□□□ 1.1
RABGGTA-220ENST00000560998 EHMT2Q96KQ7 1210 aa21.79■■□□□ 1.08
RABGGTA-220ENST00000560998 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
RABGGTA-220ENST00000560998 SOGA1O94964 1423 aa21.7■■□□□ 1.06
RABGGTA-220ENST00000560998 HMGXB3Q12766 1538 aa21.69■■□□□ 1.06
RABGGTA-220ENST00000560998 NCAPD3P42695 1498 aa21.68■■□□□ 1.06
RABGGTA-220ENST00000560998 EEA1Q15075 1411 aa21.68■■□□□ 1.06
RABGGTA-220ENST00000560998 SYNJ1O43426 1573 aa21.65■■□□□ 1.06
RABGGTA-220ENST00000560998 RUSC2Q8N2Y8 1516 aa21.6■■□□□ 1.05
RABGGTA-220ENST00000560998 CSRNP3Q8WYN3 585 aa21.56■■□□□ 1.04
RABGGTA-220ENST00000560998 ACIN1Q9UKV3 1341 aaKnown RBP21.51■■□□□ 1.03
RABGGTA-220ENST00000560998 TNIKQ9UKE5 1360 aa21.5■■□□□ 1.03
RABGGTA-220ENST00000560998 TOP2BQ02880 1626 aa21.47■■□□□ 1.03
RABGGTA-220ENST00000560998 CEP162Q5TB80 1403 aa21.46■■□□□ 1.03
RABGGTA-220ENST00000560998 GOLGA3Q08378 1498 aa21.45■■□□□ 1.02
RABGGTA-220ENST00000560998 BIVM-ERCC5R4GMW8 1640 aa21.44■■□□□ 1.02
RABGGTA-220ENST00000560998 KIF21BO75037 1637 aa21.41■■□□□ 1.02
RABGGTA-220ENST00000560998 CFTRP13569 1480 aa21.38■■□□□ 1.01
RABGGTA-220ENST00000560998 CEP164Q9UPV0 1460 aa21.38■■□□□ 1.01
RABGGTA-220ENST00000560998 UBTFP17480 764 aaKnown RBP21.36■■□□□ 1.01
RABGGTA-220ENST00000560998 CENPBP07199 599 aaPredicted RBP21.32■■□□□ 1
RABGGTA-220ENST00000560998 PRDM2Q13029 1718 aa21.31■■□□□ 1
RABGGTA-220ENST00000560998 CUX1P39880 1505 aa21.3■■□□□ 1
RABGGTA-220ENST00000560998 NEUROD1Q13562 356 aa21.29■■□□□ 1
RABGGTA-220ENST00000560998 CC2D2AQ9P2K1 1620 aa21.29■■□□□ 1
RABGGTA-220ENST00000560998 RAPGEF2Q9Y4G8 1499 aa21.22■□□□□ 0.99
RABGGTA-220ENST00000560998 GTF3C3Q9Y5Q9 886 aa21.21■□□□□ 0.99
RABGGTA-220ENST00000560998 CADPSQ9ULU8 1353 aa21.19■□□□□ 0.98
RABGGTA-220ENST00000560998 CLIP1P30622 1438 aa21.15■□□□□ 0.98
RABGGTA-220ENST00000560998 ERICH3Q5RHP9 1530 aa21.14■□□□□ 0.97
RABGGTA-220ENST00000560998 PRXQ9BXM0 1461 aa21.13■□□□□ 0.97
RABGGTA-220ENST00000560998 KIF27Q86VH2 1401 aa21.1■□□□□ 0.97
RABGGTA-220ENST00000560998 VPS8Q8N3P4 1428 aa21.04■□□□□ 0.96
RABGGTA-220ENST00000560998 TTBK1Q5TCY1 1321 aaPredicted RBP21.02■□□□□ 0.95
RABGGTA-220ENST00000560998 DIEXFQ68CQ4 756 aaKnown RBP21.01■□□□□ 0.95
RABGGTA-220ENST00000560998 FANCD2Q9BXW9 1451 aa20.97■□□□□ 0.95
RABGGTA-220ENST00000560998 FGD5Q6ZNL6 1462 aa20.96■□□□□ 0.95
RABGGTA-220ENST00000560998 CUX2O14529 1486 aa20.94■□□□□ 0.94
RABGGTA-220ENST00000560998 RANGAP1P46060 587 aaPredicted RBP20.9■□□□□ 0.94
RABGGTA-220ENST00000560998 ARAP1Q96P48 1450 aa20.89■□□□□ 0.93
RABGGTA-220ENST00000560998 IGF1RP08069 1367 aa20.88■□□□□ 0.93
RABGGTA-220ENST00000560998 NESP48681 1621 aa20.88■□□□□ 0.93
RABGGTA-220ENST00000560998 DNMBPQ6XZF7 1577 aa20.88■□□□□ 0.93
RABGGTA-220ENST00000560998 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.87■□□□□ 0.93
RABGGTA-220ENST00000560998 CCER1Q8TC90 406 aaPredicted RBP20.86■□□□□ 0.93
RABGGTA-220ENST00000560998 LAMC3Q9Y6N6 1575 aa20.84■□□□□ 0.93
RABGGTA-220ENST00000560998 APLP2Q06481 763 aa20.83■□□□□ 0.92
RABGGTA-220ENST00000560998 TOPBP1Q92547 1522 aa20.82■□□□□ 0.92
RABGGTA-220ENST00000560998 CARMIL1Q5VZK9 1371 aa20.78■□□□□ 0.92
RABGGTA-220ENST00000560998 POLA1P09884 1462 aaPredicted RBP20.76■□□□□ 0.91
RABGGTA-220ENST00000560998 ARHGAP35Q9NRY4 1499 aa20.76■□□□□ 0.91
RABGGTA-220ENST00000560998 ABCA10Q8WWZ4 1543 aa20.76■□□□□ 0.91
RABGGTA-220ENST00000560998 RAD54L2Q9Y4B4 1467 aa20.74■□□□□ 0.91
RABGGTA-220ENST00000560998 URB2Q14146 1524 aaKnown RBP20.7■□□□□ 0.9
RABGGTA-220ENST00000560998 DNAJC5BQ9UF47 199 aa20.66■□□□□ 0.9
RABGGTA-220ENST00000560998 WDR97A6NE52 1622 aa20.66■□□□□ 0.9
RABGGTA-220ENST00000560998 PDS5BQ9NTI5 1447 aa20.66■□□□□ 0.9
RABGGTA-220ENST00000560998 CLSPNQ9HAW4 1339 aa20.66■□□□□ 0.9
RABGGTA-220ENST00000560998 ZNF316A6NFI3 1004 aaPredicted RBP20.65■□□□□ 0.9
RABGGTA-220ENST00000560998 CUL7Q14999 1698 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms