RNA–Protein interactions for RNA: ENST00000560521.5

RABGGTA-217, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 3

Gene RABGGTA, Length 680 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-217ENST00000560521 NISCHQ9Y2I1 1504 aa23.13■■□□□ 1.29
RABGGTA-217ENST00000560521 ABCC9O60706 1549 aa21.32■■□□□ 1
RABGGTA-217ENST00000560521 CCDC180Q9P1Z9 1646 aa20.98■□□□□ 0.95
RABGGTA-217ENST00000560521 DNAJC5BQ9UF47 199 aa20.41■□□□□ 0.86
RABGGTA-217ENST00000560521 RB1CC1Q8TDY2 1594 aa20.12■□□□□ 0.81
RABGGTA-217ENST00000560521 NACADO15069 1562 aa19.88■□□□□ 0.77
RABGGTA-217ENST00000560521 UNC13AQ9UPW8 1703 aa19.86■□□□□ 0.77
RABGGTA-217ENST00000560521 PABPN1Q86U42 306 aaKnown RBP eCLIP19.78■□□□□ 0.764e-10■■■□□ 15
RABGGTA-217ENST00000560521 DCAF8L2P0C7V8 631 aa19.67■□□□□ 0.74
RABGGTA-217ENST00000560521 BICRAQ9NZM4 1560 aa19.61■□□□□ 0.73
RABGGTA-217ENST00000560521 MYO15BQ96JP2 1530 aa19.46■□□□□ 0.71
RABGGTA-217ENST00000560521 CC2D2AQ9P2K1 1620 aa19.29■□□□□ 0.68
RABGGTA-217ENST00000560521 CECR2Q9BXF3 1484 aa19.23■□□□□ 0.67
RABGGTA-217ENST00000560521 SHROOM4Q9ULL8 1493 aa19.18■□□□□ 0.66
RABGGTA-217ENST00000560521 EIF4G1Q04637 1599 aaKnown RBP19.12■□□□□ 0.65
RABGGTA-217ENST00000560521 SCRIBQ14160 1630 aa19.07■□□□□ 0.64
RABGGTA-217ENST00000560521 DCAF1Q9Y4B6 1507 aa19.06■□□□□ 0.64
RABGGTA-217ENST00000560521 ZCCHC6Q5VYS8 1495 aaKnown RBP19.06■□□□□ 0.64
RABGGTA-217ENST00000560521 DNAJC5Q9H3Z4 198 aa19■□□□□ 0.63
RABGGTA-217ENST00000560521 CUX2O14529 1486 aa18.52■□□□□ 0.55
RABGGTA-217ENST00000560521 ERCC6Q03468 1493 aa18.39■□□□□ 0.54
RABGGTA-217ENST00000560521 NCAPD3P42695 1498 aa18.34■□□□□ 0.53
RABGGTA-217ENST00000560521 ATAD2BQ9ULI0 1458 aa18.24■□□□□ 0.51
RABGGTA-217ENST00000560521 NESP48681 1621 aa18.23■□□□□ 0.51
RABGGTA-217ENST00000560521 HMGXB3Q12766 1538 aa18.18■□□□□ 0.5
RABGGTA-217ENST00000560521 SMARCA2P51531 1590 aa18.16■□□□□ 0.5
RABGGTA-217ENST00000560521 SMARCA4P51532 1647 aa18.16■□□□□ 0.5
RABGGTA-217ENST00000560521 THOC2Q8NI27 1593 aaKnown RBP18.14■□□□□ 0.49
RABGGTA-217ENST00000560521 KIF21AQ7Z4S6 1674 aa18.07■□□□□ 0.48
RABGGTA-217ENST00000560521 BAZ1BQ9UIG0 1483 aaKnown RBP18.02■□□□□ 0.48
RABGGTA-217ENST00000560521 LAMC3Q9Y6N6 1575 aa18.02■□□□□ 0.48
RABGGTA-217ENST00000560521 TRIM41Q8WV44 630 aa17.98■□□□□ 0.47
RABGGTA-217ENST00000560521 PEG3Q9GZU2 1588 aa17.97■□□□□ 0.47
RABGGTA-217ENST00000560521 BAZ1AQ9NRL2 1556 aaPredicted RBP17.96■□□□□ 0.47
RABGGTA-217ENST00000560521 PDS5BQ9NTI5 1447 aa17.88■□□□□ 0.45
RABGGTA-217ENST00000560521 MROH2BQ7Z745 1585 aa17.83■□□□□ 0.45
RABGGTA-217ENST00000560521 WDR62O43379 1518 aa17.77■□□□□ 0.43
RABGGTA-217ENST00000560521 MRC2Q9UBG0 1479 aa17.76■□□□□ 0.43
RABGGTA-217ENST00000560521 CADPSQ9ULU8 1353 aa17.75■□□□□ 0.43
RABGGTA-217ENST00000560521 WIZO95785 1651 aa17.65■□□□□ 0.42
RABGGTA-217ENST00000560521 OSCARQ8IYS5 282 aa17.61■□□□□ 0.41
RABGGTA-217ENST00000560521 CEP164Q9UPV0 1460 aa17.61■□□□□ 0.41
RABGGTA-217ENST00000560521 FANCD2Q9BXW9 1451 aa17.56■□□□□ 0.4
RABGGTA-217ENST00000560521 RIMBP3CA6NJZ7 1639 aa17.5■□□□□ 0.39
RABGGTA-217ENST00000560521 RIMBP3BA6NNM3 1639 aa17.5■□□□□ 0.39
RABGGTA-217ENST00000560521 RIMBP3Q9UFD9 1639 aa17.5■□□□□ 0.39
RABGGTA-217ENST00000560521 CFTRP13569 1480 aa17.48■□□□□ 0.39
RABGGTA-217ENST00000560521 URB2Q14146 1524 aaKnown RBP17.47■□□□□ 0.39
RABGGTA-217ENST00000560521 PRDM2Q13029 1718 aa17.44■□□□□ 0.38
RABGGTA-217ENST00000560521 ARHGEF11O15085 1522 aa17.35■□□□□ 0.37
RABGGTA-217ENST00000560521 TOP2AP11388 1531 aaKnown RBP17.32■□□□□ 0.36
RABGGTA-217ENST00000560521 ZNF608Q9ULD9 1512 aaPredicted RBP17.32■□□□□ 0.36
RABGGTA-217ENST00000560521 RSF1Q96T23 1441 aaPredicted RBP17.28■□□□□ 0.36
RABGGTA-217ENST00000560521 IFT140Q96RY7 1462 aa17.27■□□□□ 0.36
RABGGTA-217ENST00000560521 CHD1O14646 1710 aa17.26■□□□□ 0.35
RABGGTA-217ENST00000560521 CYB5RLQ6IPT4 315 aa17.24■□□□□ 0.35
RABGGTA-217ENST00000560521 EIF4G3O43432 1585 aaKnown RBP17.23■□□□□ 0.35
RABGGTA-217ENST00000560521 TOPBP1Q92547 1522 aa17.21■□□□□ 0.34
RABGGTA-217ENST00000560521 TRHP20396 242 aaPredicted RBP17.16■□□□□ 0.34
RABGGTA-217ENST00000560521 CCDC88BA6NC98 1476 aa17.15■□□□□ 0.34
RABGGTA-217ENST00000560521 ARAP1Q96P48 1450 aa17.15■□□□□ 0.34
RABGGTA-217ENST00000560521 TARBP1Q13395 1621 aaKnown RBP17.13■□□□□ 0.33
RABGGTA-217ENST00000560521 ABCC8Q09428 1581 aa17.11■□□□□ 0.33
RABGGTA-217ENST00000560521 DNMBPQ6XZF7 1577 aa17.11■□□□□ 0.33
RABGGTA-217ENST00000560521 AQRO60306 1485 aaKnown RBP eCLIP17.11■□□□□ 0.337e-7■■■□□ 17.9
RABGGTA-217ENST00000560521 FBLN2P98095 1184 aa17.04■□□□□ 0.32
RABGGTA-217ENST00000560521 POLA1P09884 1462 aaPredicted RBP16.99■□□□□ 0.31
RABGGTA-217ENST00000560521 RAD54L2Q9Y4B4 1467 aa16.96■□□□□ 0.31
RABGGTA-217ENST00000560521 CLASP1Q7Z460 1538 aa16.96■□□□□ 0.3
RABGGTA-217ENST00000560521 AEBP2Q6ZN18 517 aaPredicted RBP16.94■□□□□ 0.3
RABGGTA-217ENST00000560521 TDRD9Q8NDG6 1382 aaKnown RBP16.91■□□□□ 0.3
RABGGTA-217ENST00000560521 SNAPC4Q5SXM2 1469 aa16.9■□□□□ 0.3
RABGGTA-217ENST00000560521 SOGA1O94964 1423 aa16.89■□□□□ 0.29
RABGGTA-217ENST00000560521 SYNJ1O43426 1573 aa16.89■□□□□ 0.29
RABGGTA-217ENST00000560521 WDR97A6NE52 1622 aa16.87■□□□□ 0.29
RABGGTA-217ENST00000560521 CHMP7Q8WUX9 453 aaPredicted RBP16.85■□□□□ 0.29
RABGGTA-217ENST00000560521 FGD5Q6ZNL6 1462 aa16.83■□□□□ 0.28
RABGGTA-217ENST00000560521 MAGI1Q96QZ7 1491 aaPredicted RBP16.83■□□□□ 0.28
RABGGTA-217ENST00000560521 PBRM1Q86U86 1689 aa16.81■□□□□ 0.28
RABGGTA-217ENST00000560521 SYNJ2O15056 1496 aa16.79■□□□□ 0.28
RABGGTA-217ENST00000560521 GRIN2BQ13224 1484 aa16.79■□□□□ 0.28
RABGGTA-217ENST00000560521 CUX1P39880 1505 aa16.77■□□□□ 0.28
RABGGTA-217ENST00000560521 GAPVD1Q14C86 1478 aa16.77■□□□□ 0.28
RABGGTA-217ENST00000560521 ERCC6L2Q5T890 1561 aa16.69■□□□□ 0.26
RABGGTA-217ENST00000560521 KIF13AQ9H1H9 1805 aa16.68■□□□□ 0.26
RABGGTA-217ENST00000560521 ABCA5Q8WWZ7 1642 aa16.67■□□□□ 0.26
RABGGTA-217ENST00000560521 ABCA10Q8WWZ4 1543 aa16.61■□□□□ 0.25
RABGGTA-217ENST00000560521 CEP170Q5SW79 1584 aa16.6■□□□□ 0.25
RABGGTA-217ENST00000560521 GRIN2AQ12879 1464 aa16.58■□□□□ 0.24
RABGGTA-217ENST00000560521 SHROOM2Q13796 1616 aa16.58■□□□□ 0.24
RABGGTA-217ENST00000560521 NUP160Q12769 1436 aa16.54■□□□□ 0.24
RABGGTA-217ENST00000560521 ADAMTS12P58397 1594 aa16.54■□□□□ 0.24
RABGGTA-217ENST00000560521 BIVM-ERCC5R4GMW8 1640 aa16.44■□□□□ 0.22
RABGGTA-217ENST00000560521 FHAD1B1AJZ9 1412 aa16.44■□□□□ 0.22
RABGGTA-217ENST00000560521 WRNQ14191 1432 aaPredicted RBP eCLIP16.43■□□□□ 0.22
RABGGTA-217ENST00000560521 TSPOAP1O95153 1857 aa16.42■□□□□ 0.22
RABGGTA-217ENST00000560521 PRG4Q92954 1404 aaPredicted RBP16.41■□□□□ 0.22
RABGGTA-217ENST00000560521 TOP2BQ02880 1626 aa16.4■□□□□ 0.22
RABGGTA-217ENST00000560521 ERICH3Q5RHP9 1530 aa16.4■□□□□ 0.22
RABGGTA-217ENST00000560521 FAM69CQ0P6D2 419 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms