Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.936e-6■■■■□ 22
SFPQP23246 PCSK6-213ENST00000560902 501 ntTSL 48.91□□□□□ -0.986e-6■■■■□ 22
SFPQP23246 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.086e-6■■■■□ 22
SFPQP23246 ARID2-203ENST00000426776 484 ntTSL 37.85□□□□□ -1.156e-6■■■■□ 22
SFPQP23246 ENAH-201ENST00000284563 665 ntTSL 57.83□□□□□ -1.166e-6■■■■□ 22
SFPQP23246 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC6.13□□□□□ -1.436e-6■■■■□ 22
SFPQP23246 SUPT3H-204ENST00000459689 396 ntTSL 25.54□□□□□ -1.526e-6■■■■□ 22
SFPQP23246 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.586e-6■■■■□ 22
SFPQP23246 THUMPD3-AS1-209ENST00000518437 240 ntTSL 219.57■□□□□ 0.721e-6■■■■□ 21.9
SFPQP23246 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.96■□□□□ 0.141e-6■■■■□ 21.9
SFPQP23246 THUMPD3-AS1-203ENST00000469846 670 ntTSL 312.81□□□□□ -0.361e-6■■■■□ 21.9
SFPQP23246 THUMPD3-AS1-205ENST00000481221 683 ntTSL 3 BASIC9.44□□□□□ -0.91e-6■■■■□ 21.9
SFPQP23246 THUMPD3-AS1-218ENST00000522525 1867 ntTSL 1 (best)5.67□□□□□ -1.51e-6■■■■□ 21.9
SFPQP23246 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC5.66□□□□□ -1.51e-6■■■■□ 21.9
SFPQP23246 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.52□□□□□ -1.531e-6■■■■□ 21.9
SFPQP23246 THUMPD3-AS1-201ENST00000467069 667 ntTSL 55.36□□□□□ -1.551e-6■■■■□ 21.9
SFPQP23246 THUMPD3-AS1-216ENST00000521708 549 ntTSL 34.42□□□□□ -1.71e-6■■■■□ 21.9
SFPQP23246 THUMPD3-AS1-207ENST00000494680 544 ntTSL 54.19□□□□□ -1.741e-6■■■■□ 21.9
SFPQP23246 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.382e-6■■■■□ 21.9
SFPQP23246 MAD1L1-214ENST00000459731 371 ntTSL 311.77□□□□□ -0.533e-6■■■■□ 21.8
SFPQP23246 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC25.8■■□□□ 1.722e-6■■■■□ 21.8
SFPQP23246 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC23.04■■□□□ 1.282e-6■■■■□ 21.8
SFPQP23246 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC22.41■■□□□ 1.182e-6■■■■□ 21.8
SFPQP23246 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.77■□□□□ 0.922e-6■■■■□ 21.8
SFPQP23246 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.5■□□□□ 0.712e-6■■■■□ 21.8
SFPQP23246 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC10.1□□□□□ -0.792e-6■■■■□ 21.8
SFPQP23246 PKNOX1-202ENST00000418336 459 ntTSL 222.95■■□□□ 1.262e-6■■■■□ 21.8
SFPQP23246 PKNOX1-206ENST00000480179 1725 ntTSL 216.28■□□□□ 0.22e-6■■■■□ 21.8
SFPQP23246 PKNOX1-201ENST00000291547 5003 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.42e-6■■■■□ 21.8
SFPQP23246 PKNOX1-203ENST00000432907 5180 ntTSL 2 BASIC12.34□□□□□ -0.432e-6■■■■□ 21.8
SFPQP23246 MAD1L1-221ENST00000486340 646 ntTSL 319.06■□□□□ 0.642e-6■■■■□ 21.8
SFPQP23246 NSD2-219ENST00000508803 4251 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.81e-6■■■■□ 21.7
SFPQP23246 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.611e-6■■■■□ 21.6
SFPQP23246 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.511e-6■■■■□ 21.6
SFPQP23246 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.371e-6■■■■□ 21.6
SFPQP23246 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.341e-6■■■■□ 21.6
SFPQP23246 CUX1-201ENST00000292535 13747 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.671e-6■■■■□ 21.6
SFPQP23246 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC15.88■□□□□ 0.134e-8■■■■□ 21.6
SFPQP23246 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.054e-8■■■■□ 21.6
SFPQP23246 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.034e-8■■■■□ 21.6
SFPQP23246 RNF43-203ENST00000577716 4367 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.364e-8■■■■□ 21.6
SFPQP23246 RNF43-207ENST00000583753 3560 ntTSL 2 BASIC12.4□□□□□ -0.424e-8■■■■□ 21.6
SFPQP23246 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.114e-6■■■■□ 21.6
SFPQP23246 HK2-202ENST00000409174 5278 ntTSL 1 (best) BASIC12.61□□□□□ -0.394e-6■■■■□ 21.6
SFPQP23246 REV3L-205ENST00000422377 10964 ntTSL 216.35■□□□□ 0.212e-6■■■■□ 21.5
SFPQP23246 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC15.52■□□□□ 0.082e-6■■■■□ 21.5
SFPQP23246 REV3L-201ENST00000358835 10815 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.152e-6■■■■□ 21.5
SFPQP23246 REV3L-202ENST00000368802 10701 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.52e-6■■■■□ 21.5
SFPQP23246 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.942e-6■■■■□ 21.5
SFPQP23246 REV3L-206ENST00000434009 10644 ntTSL 22.81□□□□□ -1.962e-6■■■■□ 21.5
SFPQP23246 RAB10-204ENST00000495146 1292 ntTSL 525.91■■□□□ 1.746e-11■■■■□ 21.5
SFPQP23246 RAB10-201ENST00000264710 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.096e-11■■■■□ 21.5
SFPQP23246 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.038e-7■■■■□ 21.4
SFPQP23246 BNIP3-204ENST00000633835 1062 ntTSL 323.61■■□□□ 1.371e-6■■■■□ 21.4
SFPQP23246 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.31e-6■■■■□ 21.4
SFPQP23246 BNIP3-203ENST00000631806 752 ntTSL 216.08■□□□□ 0.161e-6■■■■□ 21.4
SFPQP23246 BNIP3-202ENST00000540159 3066 ntTSL 1 (best)15.77■□□□□ 0.111e-6■■■■□ 21.4
SFPQP23246 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.415e-9■■■■□ 21.4
SFPQP23246 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.728e-7■■■■□ 21.3
SFPQP23246 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.688e-7■■■■□ 21.3
SFPQP23246 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.392e-7■■■■□ 21.3
SFPQP23246 DUSP9-203ENST00000477033 430 ntTSL 322.32■■□□□ 1.162e-7■■■■□ 21.3
SFPQP23246 CTIF-209ENST00000591387 859 ntTSL 220.16■□□□□ 0.828e-9■■■■□ 21.2
SFPQP23246 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.638e-9■■■■□ 21.2
SFPQP23246 CTIF-203ENST00000587752 683 ntTSL 516.8■□□□□ 0.288e-9■■■■□ 21.2
SFPQP23246 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC15.5■□□□□ 0.078e-9■■■■□ 21.2
SFPQP23246 CTIF-210ENST00000591412 491 ntTSL 314.88□□□□□ -0.038e-9■■■■□ 21.2
SFPQP23246 YWHAQ-203ENST00000446619 665 ntTSL 323.3■■□□□ 1.328e-7■■■■□ 21.2
SFPQP23246 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.178e-7■■■■□ 21.2
SFPQP23246 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.18e-7■■■■□ 21.2
SFPQP23246 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.279e-7■■■■□ 21.1
SFPQP23246 SMYD3-207ENST00000462422 971 ntTSL 514.36□□□□□ -0.119e-7■■■■□ 21.1
SFPQP23246 SMYD3-216ENST00000492487 634 ntTSL 39.16□□□□□ -0.949e-7■■■■□ 21.1
SFPQP23246 SMYD3-218ENST00000630181 1458 ntTSL 2 BASIC8.62□□□□□ -1.039e-7■■■■□ 21.1
SFPQP23246 SMYD3-205ENST00000453676 562 ntTSL 44.3□□□□□ -1.729e-7■■■■□ 21.1
SFPQP23246 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.341e-6■■■■□ 21.1
SFPQP23246 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC22.39■■□□□ 1.181e-6■■■■□ 21.1
SFPQP23246 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.8■■□□□ 1.44e-6■■■■□ 21.1
SFPQP23246 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.61■■□□□ 1.054e-6■■■■□ 21.1
SFPQP23246 AFF1-209ENST00000511996 480 ntTSL 215.66■□□□□ 0.14e-6■■■■□ 21.1
SFPQP23246 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.612e-6■■■■□ 21
SFPQP23246 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.65■□□□□ 0.422e-6■■■■□ 21
SFPQP23246 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.272e-6■■■■□ 21
SFPQP23246 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.062e-6■■■■□ 21
SFPQP23246 ACTN1-220ENST00000556433 1259 ntTSL 325.33■■□□□ 1.657e-7■■■■□ 21
SFPQP23246 ACTN1-209ENST00000553659 434 ntTSL 417.63■□□□□ 0.417e-7■■■■□ 21
SFPQP23246 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC15.81■□□□□ 0.127e-7■■■■□ 21
SFPQP23246 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC15.63■□□□□ 0.097e-7■■■■□ 21
SFPQP23246 BICRAL-203ENST00000614467 6510 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.192e-6■■■■□ 21
SFPQP23246 ACTN1-221ENST00000556571 568 ntTSL 413.39□□□□□ -0.277e-7■■■■□ 21
SFPQP23246 ACTN1-201ENST00000193403 3779 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.317e-7■■■■□ 21
SFPQP23246 ACTN1-203ENST00000394419 3464 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.457e-7■■■■□ 21
SFPQP23246 ACTN1-215ENST00000555616 919 ntTSL 310.7□□□□□ -0.77e-7■■■■□ 21
SFPQP23246 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.422e-6■■■■□ 21
SFPQP23246 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.875e-7■■■■□ 20.9
SFPQP23246 USP7-208ENST00000563961 4533 ntTSL 516.57■□□□□ 0.245e-7■■■■□ 20.9
SFPQP23246 USP7-219ENST00000569230 569 ntTSL 55.73□□□□□ -1.495e-7■■■■□ 20.9
SFPQP23246 NECAB3-211ENST00000485399 1373 ntTSL 223.86■■□□□ 1.411e-6■■■■□ 20.9
SFPQP23246 NECAB3-222ENST00000607805 969 ntTSL 523.62■■□□□ 1.371e-6■■■■□ 20.9
SFPQP23246 NECAB3-213ENST00000488489 2142 ntTSL 222.41■■□□□ 1.181e-6■■■■□ 20.9
Retrieved 100 of 4,991 protein–RNA pairs in 147.5 ms