RNA–Protein interactions for RNA: ENST00000480179.1

PKNOX1-206, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 1,725 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-206ENST00000480179 NISCHQ9Y2I1 1504 aa32.38■■■□□ 2.77
PKNOX1-206ENST00000480179 ABCC9O60706 1549 aa28.34■■■□□ 2.13
PKNOX1-206ENST00000480179 CCDC180Q9P1Z9 1646 aa28.21■■■□□ 2.11
PKNOX1-206ENST00000480179 ZCCHC6Q5VYS8 1495 aaKnown RBP27.26■■□□□ 1.95
PKNOX1-206ENST00000480179 RB1CC1Q8TDY2 1594 aa26.94■■□□□ 1.9
PKNOX1-206ENST00000480179 DCAF8L2P0C7V8 631 aa26.76■■□□□ 1.88
PKNOX1-206ENST00000480179 SHROOM4Q9ULL8 1493 aa26.76■■□□□ 1.87
PKNOX1-206ENST00000480179 NACADO15069 1562 aa26.75■■□□□ 1.87
PKNOX1-206ENST00000480179 DCAF1Q9Y4B6 1507 aa26.69■■□□□ 1.86
PKNOX1-206ENST00000480179 DNAJC5BQ9UF47 199 aa26.62■■□□□ 1.85
PKNOX1-206ENST00000480179 PABPN1Q86U42 306 aaKnown RBP eCLIP26.42■■□□□ 1.82
PKNOX1-206ENST00000480179 MYO15BQ96JP2 1530 aa26.35■■□□□ 1.81
PKNOX1-206ENST00000480179 UNC13AQ9UPW8 1703 aa26.2■■□□□ 1.78
PKNOX1-206ENST00000480179 BICRAQ9NZM4 1560 aa26.08■■□□□ 1.76
PKNOX1-206ENST00000480179 SCRIBQ14160 1630 aa26.02■■□□□ 1.76
PKNOX1-206ENST00000480179 SUPT5HO00267 1087 aaKnown RBP25.81■■□□□ 1.72
PKNOX1-206ENST00000480179 CC2D2AQ9P2K1 1620 aa25.56■■□□□ 1.68
PKNOX1-206ENST00000480179 CECR2Q9BXF3 1484 aa25.55■■□□□ 1.68
PKNOX1-206ENST00000480179 EIF4G1Q04637 1599 aaKnown RBP25.5■■□□□ 1.67
PKNOX1-206ENST00000480179 RSF1Q96T23 1441 aaPredicted RBP25.22■■□□□ 1.63
PKNOX1-206ENST00000480179 MROH2BQ7Z745 1585 aa25.07■■□□□ 1.6
PKNOX1-206ENST00000480179 BAZ1AQ9NRL2 1556 aaPredicted RBP24.97■■□□□ 1.59
PKNOX1-206ENST00000480179 WIZO95785 1651 aa24.92■■□□□ 1.58
PKNOX1-206ENST00000480179 SMARCA4P51532 1647 aa24.88■■□□□ 1.57
PKNOX1-206ENST00000480179 CHIC1Q5VXU3 224 aa24.77■■□□□ 1.56
PKNOX1-206ENST00000480179 NCAPD3P42695 1498 aa24.7■■□□□ 1.54
PKNOX1-206ENST00000480179 TOP2AP11388 1531 aaKnown RBP24.61■■□□□ 1.53
PKNOX1-206ENST00000480179 ATAD2BQ9ULI0 1458 aa24.6■■□□□ 1.53
PKNOX1-206ENST00000480179 DNAJC5Q9H3Z4 198 aa24.56■■□□□ 1.52
PKNOX1-206ENST00000480179 SMARCA2P51531 1590 aa24.55■■□□□ 1.52
PKNOX1-206ENST00000480179 ERCC6Q03468 1493 aa24.53■■□□□ 1.52
PKNOX1-206ENST00000480179 PEG3Q9GZU2 1588 aa24.48■■□□□ 1.51
PKNOX1-206ENST00000480179 HMGXB3Q12766 1538 aa24.47■■□□□ 1.51
PKNOX1-206ENST00000480179 CUX2O14529 1486 aa24.46■■□□□ 1.51
PKNOX1-206ENST00000480179 BAZ1BQ9UIG0 1483 aaKnown RBP24.39■■□□□ 1.49
PKNOX1-206ENST00000480179 CCDC88BA6NC98 1476 aa24.37■■□□□ 1.49
PKNOX1-206ENST00000480179 NESP48681 1621 aa24.29■■□□□ 1.48
PKNOX1-206ENST00000480179 TRIM41Q8WV44 630 aa24.18■■□□□ 1.46
PKNOX1-206ENST00000480179 LAMC3Q9Y6N6 1575 aa24.14■■□□□ 1.45
PKNOX1-206ENST00000480179 PDS5BQ9NTI5 1447 aa24.07■■□□□ 1.44
PKNOX1-206ENST00000480179 ABCC8Q09428 1581 aa24.02■■□□□ 1.44
PKNOX1-206ENST00000480179 THOC2Q8NI27 1593 aaKnown RBP24.01■■□□□ 1.43
PKNOX1-206ENST00000480179 CADPSQ9ULU8 1353 aa23.97■■□□□ 1.43
PKNOX1-206ENST00000480179 KIF21AQ7Z4S6 1674 aa23.93■■□□□ 1.42
PKNOX1-206ENST00000480179 LOC105371045A0A1W2PR82 267 aa23.89■■□□□ 1.41
PKNOX1-206ENST00000480179 FAM9AQ8IZU1 332 aaPredicted RBP23.85■■□□□ 1.41
PKNOX1-206ENST00000480179 MRC2Q9UBG0 1479 aa23.81■■□□□ 1.4
PKNOX1-206ENST00000480179 WRNQ14191 1432 aaPredicted RBP eCLIP23.74■■□□□ 1.395e-6■■■■■ 29.2
PKNOX1-206ENST00000480179 WDR62O43379 1518 aa23.72■■□□□ 1.39
PKNOX1-206ENST00000480179 CEP164Q9UPV0 1460 aa23.72■■□□□ 1.39
PKNOX1-206ENST00000480179 SYNJ1O43426 1573 aa23.69■■□□□ 1.38
PKNOX1-206ENST00000480179 FANCD2Q9BXW9 1451 aa23.68■■□□□ 1.38
PKNOX1-206ENST00000480179 CFTRP13569 1480 aa23.65■■□□□ 1.38
PKNOX1-206ENST00000480179 PRDM2Q13029 1718 aa23.6■■□□□ 1.37
PKNOX1-206ENST00000480179 EHMT2Q96KQ7 1210 aa23.59■■□□□ 1.37
PKNOX1-206ENST00000480179 SOGA1O94964 1423 aa23.57■■□□□ 1.36
PKNOX1-206ENST00000480179 TOP2BQ02880 1626 aa23.52■■□□□ 1.36
PKNOX1-206ENST00000480179 BIVM-ERCC5R4GMW8 1640 aa23.5■■□□□ 1.35
PKNOX1-206ENST00000480179 RUSC2Q8N2Y8 1516 aa23.48■■□□□ 1.35
PKNOX1-206ENST00000480179 EEA1Q15075 1411 aa23.48■■□□□ 1.35
PKNOX1-206ENST00000480179 URB2Q14146 1524 aaKnown RBP23.45■■□□□ 1.34
PKNOX1-206ENST00000480179 CUX1P39880 1505 aa23.43■■□□□ 1.34
PKNOX1-206ENST00000480179 OSCARQ8IYS5 282 aa23.43■■□□□ 1.34
PKNOX1-206ENST00000480179 CSRNP3Q8WYN3 585 aa23.36■■□□□ 1.33
PKNOX1-206ENST00000480179 IFT140Q96RY7 1462 aa23.25■■□□□ 1.31
PKNOX1-206ENST00000480179 GOLGA3Q08378 1498 aa23.24■■□□□ 1.31
PKNOX1-206ENST00000480179 KIF21BO75037 1637 aa23.23■■□□□ 1.31
PKNOX1-206ENST00000480179 TOPBP1Q92547 1522 aa23.2■■□□□ 1.31
PKNOX1-206ENST00000480179 ZNF608Q9ULD9 1512 aaPredicted RBP23.17■■□□□ 1.3
PKNOX1-206ENST00000480179 TNIKQ9UKE5 1360 aa23.17■■□□□ 1.3
PKNOX1-206ENST00000480179 UBTFP17480 764 aaKnown RBP23.14■■□□□ 1.3
PKNOX1-206ENST00000480179 FGD5Q6ZNL6 1462 aa23.14■■□□□ 1.3
PKNOX1-206ENST00000480179 CEP162Q5TB80 1403 aa23.13■■□□□ 1.29
PKNOX1-206ENST00000480179 DNMBPQ6XZF7 1577 aa23.13■■□□□ 1.29
PKNOX1-206ENST00000480179 KIF27Q86VH2 1401 aa23.11■■□□□ 1.29
PKNOX1-206ENST00000480179 RAPGEF2Q9Y4G8 1499 aa23.08■■□□□ 1.28
PKNOX1-206ENST00000480179 PCGF6Q9BYE7 350 aa23.07■■□□□ 1.28
PKNOX1-206ENST00000480179 EIF4G3O43432 1585 aaKnown RBP23.02■■□□□ 1.28
PKNOX1-206ENST00000480179 PRXQ9BXM0 1461 aa23■■□□□ 1.27
PKNOX1-206ENST00000480179 AQRO60306 1485 aaKnown RBP eCLIP22.99■■□□□ 1.27
PKNOX1-206ENST00000480179 ERICH3Q5RHP9 1530 aa22.99■■□□□ 1.27
PKNOX1-206ENST00000480179 RIMBP3CA6NJZ7 1639 aa22.98■■□□□ 1.27
PKNOX1-206ENST00000480179 RIMBP3BA6NNM3 1639 aa22.98■■□□□ 1.27
PKNOX1-206ENST00000480179 RIMBP3Q9UFD9 1639 aa22.98■■□□□ 1.27
PKNOX1-206ENST00000480179 POLA1P09884 1462 aaPredicted RBP22.97■■□□□ 1.27
PKNOX1-206ENST00000480179 FBLN2P98095 1184 aa22.96■■□□□ 1.27
PKNOX1-206ENST00000480179 TARBP1Q13395 1621 aaKnown RBP22.95■■□□□ 1.27
PKNOX1-206ENST00000480179 RAD54L2Q9Y4B4 1467 aa22.94■■□□□ 1.26
PKNOX1-206ENST00000480179 ARHGEF11O15085 1522 aa22.93■■□□□ 1.26
PKNOX1-206ENST00000480179 TRIM26Q12899 539 aaPredicted RBP22.92■■□□□ 1.26
PKNOX1-206ENST00000480179 ABCA10Q8WWZ4 1543 aa22.89■■□□□ 1.25
PKNOX1-206ENST00000480179 CLIP1P30622 1438 aa22.89■■□□□ 1.25
PKNOX1-206ENST00000480179 CYB5RLQ6IPT4 315 aa22.88■■□□□ 1.25
PKNOX1-206ENST00000480179 TDRD9Q8NDG6 1382 aaKnown RBP22.87■■□□□ 1.25
PKNOX1-206ENST00000480179 IGF1RP08069 1367 aa22.86■■□□□ 1.25
PKNOX1-206ENST00000480179 WDR97A6NE52 1622 aa22.85■■□□□ 1.25
PKNOX1-206ENST00000480179 CHD1O14646 1710 aa22.84■■□□□ 1.25
PKNOX1-206ENST00000480179 PPARGC1BQ86YN6 1023 aaKnown RBP22.83■■□□□ 1.25
PKNOX1-206ENST00000480179 RANGAP1P46060 587 aaPredicted RBP22.8■■□□□ 1.24
PKNOX1-206ENST00000480179 CHMP7Q8WUX9 453 aaPredicted RBP22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms