RNA–Protein interactions for RNA: ENST00000540159.3

BNIP3-202, Transcript of BCL2 interacting protein 3, humanhuman

TSL 1 (best)

Gene BNIP3, Length 3,066 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BNIP3-202ENST00000540159 NISCHQ9Y2I1 1504 aa27.8■■■□□ 2.04
BNIP3-202ENST00000540159 SHROOM4Q9ULL8 1493 aa24.51■■□□□ 1.51
BNIP3-202ENST00000540159 SUPT5HO00267 1087 aaKnown RBP24.04■■□□□ 1.44
BNIP3-202ENST00000540159 DCAF8L2P0C7V8 631 aa23.96■■□□□ 1.43
BNIP3-202ENST00000540159 ZCCHC6Q5VYS8 1495 aaKnown RBP23.45■■□□□ 1.34
BNIP3-202ENST00000540159 CCDC180Q9P1Z9 1646 aa23.28■■□□□ 1.32
BNIP3-202ENST00000540159 CHIC1Q5VXU3 224 aa23.04■■□□□ 1.28
BNIP3-202ENST00000540159 MYO15BQ96JP2 1530 aa22.99■■□□□ 1.27
BNIP3-202ENST00000540159 LOC105371045A0A1W2PR82 267 aa22.68■■□□□ 1.22
BNIP3-202ENST00000540159 PCGF6Q9BYE7 350 aa22.67■■□□□ 1.22
BNIP3-202ENST00000540159 EHMT2Q96KQ7 1210 aa22.47■■□□□ 1.19
BNIP3-202ENST00000540159 DCAF1Q9Y4B6 1507 aa22.43■■□□□ 1.18
BNIP3-202ENST00000540159 SCRIBQ14160 1630 aa22.41■■□□□ 1.18
BNIP3-202ENST00000540159 HRCP23327 699 aa22.36■■□□□ 1.17
BNIP3-202ENST00000540159 FAM9AQ8IZU1 332 aaPredicted RBP22.35■■□□□ 1.17
BNIP3-202ENST00000540159 PPARGC1BQ86YN6 1023 aaKnown RBP22.33■■□□□ 1.17
BNIP3-202ENST00000540159 ABCC9O60706 1549 aa22.28■■□□□ 1.16
BNIP3-202ENST00000540159 RSF1Q96T23 1441 aaPredicted RBP22.15■■□□□ 1.14
BNIP3-202ENST00000540159 TRIM41Q8WV44 630 aa22.15■■□□□ 1.14
BNIP3-202ENST00000540159 RB1CC1Q8TDY2 1594 aa22■■□□□ 1.11
BNIP3-202ENST00000540159 CECR2Q9BXF3 1484 aa21.97■■□□□ 1.11
BNIP3-202ENST00000540159 TRIM26Q12899 539 aaPredicted RBP21.87■■□□□ 1.09
BNIP3-202ENST00000540159 MROH2BQ7Z745 1585 aa21.78■■□□□ 1.08
BNIP3-202ENST00000540159 TTBK1Q5TCY1 1321 aaPredicted RBP21.69■■□□□ 1.06
BNIP3-202ENST00000540159 WIZO95785 1651 aa21.68■■□□□ 1.06
BNIP3-202ENST00000540159 NACADO15069 1562 aa21.65■■□□□ 1.06
BNIP3-202ENST00000540159 PABPN1Q86U42 306 aaKnown RBP eCLIP21.54■■□□□ 1.04
BNIP3-202ENST00000540159 ABCC8Q09428 1581 aa21.36■■□□□ 1.01
BNIP3-202ENST00000540159 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.35■■□□□ 1.01
BNIP3-202ENST00000540159 BAZ1AQ9NRL2 1556 aaPredicted RBP21.29■■□□□ 1
BNIP3-202ENST00000540159 CCDC88BA6NC98 1476 aa21.26■□□□□ 0.99
BNIP3-202ENST00000540159 ZEB1P37275 1124 aaPredicted RBP21.21■□□□□ 0.99
BNIP3-202ENST00000540159 UBTFP17480 764 aaKnown RBP21.21■□□□□ 0.99
BNIP3-202ENST00000540159 CCER1Q8TC90 406 aaPredicted RBP21.2■□□□□ 0.98
BNIP3-202ENST00000540159 RANGAP1P46060 587 aaPredicted RBP21.19■□□□□ 0.98
BNIP3-202ENST00000540159 SOGA1O94964 1423 aa21.18■□□□□ 0.98
BNIP3-202ENST00000540159 SMARCA4P51532 1647 aa21.15■□□□□ 0.98
BNIP3-202ENST00000540159 RUSC2Q8N2Y8 1516 aa21.11■□□□□ 0.97
BNIP3-202ENST00000540159 UNC13AQ9UPW8 1703 aa21.11■□□□□ 0.97
BNIP3-202ENST00000540159 TOP2AP11388 1531 aaKnown RBP21.11■□□□□ 0.97
BNIP3-202ENST00000540159 SMARCA2P51531 1590 aa21.08■□□□□ 0.96
BNIP3-202ENST00000540159 EIF4G1Q04637 1599 aaKnown RBP21.08■□□□□ 0.96
BNIP3-202ENST00000540159 CSRNP3Q8WYN3 585 aa21.02■□□□□ 0.96
BNIP3-202ENST00000540159 CEP162Q5TB80 1403 aa21■□□□□ 0.95
BNIP3-202ENST00000540159 BICRAQ9NZM4 1560 aa20.87■□□□□ 0.93
BNIP3-202ENST00000540159 HNRNPUL2Q1KMD3 747 aaKnown RBP20.87■□□□□ 0.93
BNIP3-202ENST00000540159 WRNQ14191 1432 aaPredicted RBP eCLIP20.84■□□□□ 0.93
BNIP3-202ENST00000540159 TNIKQ9UKE5 1360 aa20.8■□□□□ 0.92
BNIP3-202ENST00000540159 SCAF1Q9H7N4 1312 aaKnown RBP20.79■□□□□ 0.92
BNIP3-202ENST00000540159 SYNJ1O43426 1573 aa20.71■□□□□ 0.91
BNIP3-202ENST00000540159 DIEXFQ68CQ4 756 aaKnown RBP20.7■□□□□ 0.9
BNIP3-202ENST00000540159 GOLGA3Q08378 1498 aa20.7■□□□□ 0.9
BNIP3-202ENST00000540159 BAZ1BQ9UIG0 1483 aaKnown RBP20.69■□□□□ 0.9
BNIP3-202ENST00000540159 ATAD2BQ9ULI0 1458 aa20.68■□□□□ 0.9
BNIP3-202ENST00000540159 APLP2Q06481 763 aa20.64■□□□□ 0.89
BNIP3-202ENST00000540159 EEA1Q15075 1411 aa20.62■□□□□ 0.89
BNIP3-202ENST00000540159 CLIP1P30622 1438 aa20.61■□□□□ 0.89
BNIP3-202ENST00000540159 NEUROD1Q13562 356 aa20.59■□□□□ 0.89
BNIP3-202ENST00000540159 RAPGEF2Q9Y4G8 1499 aa20.59■□□□□ 0.89
BNIP3-202ENST00000540159 YTHDC1Q96MU7 727 aaKnown RBP20.58■□□□□ 0.89
BNIP3-202ENST00000540159 CEP164Q9UPV0 1460 aa20.55■□□□□ 0.88
BNIP3-202ENST00000540159 PEG3Q9GZU2 1588 aa20.48■□□□□ 0.87
BNIP3-202ENST00000540159 ACIN1Q9UKV3 1341 aaKnown RBP20.45■□□□□ 0.86
BNIP3-202ENST00000540159 ITGAEP38570 1179 aa20.44■□□□□ 0.86
BNIP3-202ENST00000540159 ZNF316A6NFI3 1004 aaPredicted RBP20.42■□□□□ 0.86
BNIP3-202ENST00000540159 GTF3C3Q9Y5Q9 886 aa20.41■□□□□ 0.86
BNIP3-202ENST00000540159 VPS8Q8N3P4 1428 aa20.4■□□□□ 0.86
BNIP3-202ENST00000540159 KANK4Q5T7N3 995 aaPredicted RBP20.38■□□□□ 0.85
BNIP3-202ENST00000540159 KIF21BO75037 1637 aa20.36■□□□□ 0.85
BNIP3-202ENST00000540159 MIER1Q8N108 512 aa20.31■□□□□ 0.84
BNIP3-202ENST00000540159 CENPBP07199 599 aaPredicted RBP20.31■□□□□ 0.84
BNIP3-202ENST00000540159 TOP2BQ02880 1626 aa20.27■□□□□ 0.84
BNIP3-202ENST00000540159 ATP1B4Q9UN42 357 aaPredicted RBP20.26■□□□□ 0.83
BNIP3-202ENST00000540159 P3H3Q8IVL6 736 aa20.24■□□□□ 0.83
BNIP3-202ENST00000540159 CUX1P39880 1505 aa20.22■□□□□ 0.83
BNIP3-202ENST00000540159 ARAP1Q96P48 1450 aa20.19■□□□□ 0.82
BNIP3-202ENST00000540159 KIF27Q86VH2 1401 aa20.15■□□□□ 0.82
BNIP3-202ENST00000540159 PRXQ9BXM0 1461 aa20.15■□□□□ 0.82
BNIP3-202ENST00000540159 NCAPD3P42695 1498 aa20.13■□□□□ 0.81
BNIP3-202ENST00000540159 BIVM-ERCC5R4GMW8 1640 aa20.1■□□□□ 0.81
BNIP3-202ENST00000540159 CUX2O14529 1486 aa20.09■□□□□ 0.81
BNIP3-202ENST00000540159 DHX57Q6P158 1386 aaKnown RBP20.05■□□□□ 0.8
BNIP3-202ENST00000540159 CFTRP13569 1480 aa20.05■□□□□ 0.8
BNIP3-202ENST00000540159 FAM50AQ14320 339 aaKnown RBP20.03■□□□□ 0.8
BNIP3-202ENST00000540159 HMGXB3Q12766 1538 aa20.02■□□□□ 0.8
BNIP3-202ENST00000540159 ARHGAP35Q9NRY4 1499 aa20.02■□□□□ 0.79
BNIP3-202ENST00000540159 ERICH3Q5RHP9 1530 aa20■□□□□ 0.79
BNIP3-202ENST00000540159 IGF1RP08069 1367 aa19.98■□□□□ 0.79
BNIP3-202ENST00000540159 CCNB3Q8WWL7 1395 aa19.95■□□□□ 0.78
BNIP3-202ENST00000540159 CARMIL1Q5VZK9 1371 aa19.95■□□□□ 0.78
BNIP3-202ENST00000540159 CADPSQ9ULU8 1353 aa19.93■□□□□ 0.78
BNIP3-202ENST00000540159 FGD5Q6ZNL6 1462 aa19.92■□□□□ 0.78
BNIP3-202ENST00000540159 PELP1Q8IZL8 1130 aaKnown RBP19.91■□□□□ 0.78
BNIP3-202ENST00000540159 HIRIP3Q9BW71 556 aaPredicted RBP19.9■□□□□ 0.78
BNIP3-202ENST00000540159 SIN3AQ96ST3 1273 aa19.89■□□□□ 0.77
BNIP3-202ENST00000540159 RAD54L2Q9Y4B4 1467 aa19.87■□□□□ 0.77
BNIP3-202ENST00000540159 RAB3GAP2Q9H2M9 1393 aa19.85■□□□□ 0.77
BNIP3-202ENST00000540159 NESP48681 1621 aa19.84■□□□□ 0.77
BNIP3-202ENST00000540159 RRBP1Q9P2E9 1410 aaKnown RBP19.84■□□□□ 0.77
BNIP3-202ENST00000540159 KCNH8Q96L42 1107 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms