RNA–Protein interactions for RNA: ENST00000581868.1

RNF43-205, Transcript of ring finger protein 43, humanhuman

TSL 2 BASIC

Gene RNF43, Length 2,610 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-205ENST00000581868 NISCHQ9Y2I1 1504 aa27.73■■■□□ 2.03
RNF43-205ENST00000581868 SHROOM4Q9ULL8 1493 aa24.03■■□□□ 1.44
RNF43-205ENST00000581868 SUPT5HO00267 1087 aaKnown RBP23.67■■□□□ 1.38
RNF43-205ENST00000581868 ZCCHC6Q5VYS8 1495 aaKnown RBP23.47■■□□□ 1.35
RNF43-205ENST00000581868 CCDC180Q9P1Z9 1646 aa23.36■■□□□ 1.33
RNF43-205ENST00000581868 DCAF8L2P0C7V8 631 aa23.25■■□□□ 1.31
RNF43-205ENST00000581868 CHIC1Q5VXU3 224 aa23.01■■□□□ 1.27
RNF43-205ENST00000581868 MYO15BQ96JP2 1530 aa22.94■■□□□ 1.26
RNF43-205ENST00000581868 DCAF1Q9Y4B6 1507 aa22.64■■□□□ 1.21
RNF43-205ENST00000581868 HRCP23327 699 aa22.63■■□□□ 1.21
RNF43-205ENST00000581868 PCGF6Q9BYE7 350 aa22.59■■□□□ 1.21
RNF43-205ENST00000581868 LOC105371045A0A1W2PR82 267 aa22.43■■□□□ 1.18
RNF43-205ENST00000581868 PPARGC1BQ86YN6 1023 aaKnown RBP22.24■■□□□ 1.15
RNF43-205ENST00000581868 ABCC9O60706 1549 aa22.17■■□□□ 1.14
RNF43-205ENST00000581868 SCRIBQ14160 1630 aa22.12■■□□□ 1.13
RNF43-205ENST00000581868 RSF1Q96T23 1441 aaPredicted RBP22.08■■□□□ 1.12
RNF43-205ENST00000581868 TRIM26Q12899 539 aaPredicted RBP22.03■■□□□ 1.12
RNF43-205ENST00000581868 TRIM41Q8WV44 630 aa21.98■■□□□ 1.11
RNF43-205ENST00000581868 FAM9AQ8IZU1 332 aaPredicted RBP21.91■■□□□ 1.1
RNF43-205ENST00000581868 RB1CC1Q8TDY2 1594 aa21.86■■□□□ 1.09
RNF43-205ENST00000581868 EHMT2Q96KQ7 1210 aa21.8■■□□□ 1.08
RNF43-205ENST00000581868 CECR2Q9BXF3 1484 aa21.71■■□□□ 1.07
RNF43-205ENST00000581868 NACADO15069 1562 aa21.62■■□□□ 1.05
RNF43-205ENST00000581868 MROH2BQ7Z745 1585 aa21.62■■□□□ 1.05
RNF43-205ENST00000581868 ZEB1P37275 1124 aaPredicted RBP21.59■■□□□ 1.05
RNF43-205ENST00000581868 WIZO95785 1651 aa21.51■■□□□ 1.03
RNF43-205ENST00000581868 BAZ1AQ9NRL2 1556 aaPredicted RBP21.31■■□□□ 1
RNF43-205ENST00000581868 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.2■□□□□ 0.98
RNF43-205ENST00000581868 EIF4G1Q04637 1599 aaKnown RBP21.19■□□□□ 0.98
RNF43-205ENST00000581868 ABCC8Q09428 1581 aa21.15■□□□□ 0.98
RNF43-205ENST00000581868 CCER1Q8TC90 406 aaPredicted RBP21.14■□□□□ 0.97
RNF43-205ENST00000581868 TTBK1Q5TCY1 1321 aaPredicted RBP21.13■□□□□ 0.97
RNF43-205ENST00000581868 TOP2AP11388 1531 aaKnown RBP21.11■□□□□ 0.97
RNF43-205ENST00000581868 CCDC88BA6NC98 1476 aa21.11■□□□□ 0.97
RNF43-205ENST00000581868 SMARCA4P51532 1647 aa21.07■□□□□ 0.96
RNF43-205ENST00000581868 SMARCA2P51531 1590 aa21.02■□□□□ 0.96
RNF43-205ENST00000581868 SCAF1Q9H7N4 1312 aaKnown RBP21.01■□□□□ 0.95
RNF43-205ENST00000581868 SOGA1O94964 1423 aa21.01■□□□□ 0.95
RNF43-205ENST00000581868 CEP162Q5TB80 1403 aa20.98■□□□□ 0.95
RNF43-205ENST00000581868 UBTFP17480 764 aaKnown RBP20.94■□□□□ 0.94
RNF43-205ENST00000581868 WRNQ14191 1432 aaPredicted RBP eCLIP20.93■□□□□ 0.94
RNF43-205ENST00000581868 CSRNP3Q8WYN3 585 aa20.92■□□□□ 0.94
RNF43-205ENST00000581868 UNC13AQ9UPW8 1703 aa20.91■□□□□ 0.94
RNF43-205ENST00000581868 PABPN1Q86U42 306 aaKnown RBP eCLIP20.91■□□□□ 0.94
RNF43-205ENST00000581868 TNIKQ9UKE5 1360 aa20.9■□□□□ 0.94
RNF43-205ENST00000581868 RUSC2Q8N2Y8 1516 aa20.9■□□□□ 0.94
RNF43-205ENST00000581868 EEA1Q15075 1411 aa20.82■□□□□ 0.92
RNF43-205ENST00000581868 DIEXFQ68CQ4 756 aaKnown RBP20.8■□□□□ 0.92
RNF43-205ENST00000581868 GOLGA3Q08378 1498 aa20.74■□□□□ 0.91
RNF43-205ENST00000581868 ACIN1Q9UKV3 1341 aaKnown RBP20.73■□□□□ 0.91
RNF43-205ENST00000581868 NEUROD1Q13562 356 aa20.72■□□□□ 0.91
RNF43-205ENST00000581868 PELP1Q8IZL8 1130 aaKnown RBP20.71■□□□□ 0.91
RNF43-205ENST00000581868 BICRAQ9NZM4 1560 aa20.68■□□□□ 0.9
RNF43-205ENST00000581868 HNRNPUL2Q1KMD3 747 aaKnown RBP20.62■□□□□ 0.89
RNF43-205ENST00000581868 SYNJ1O43426 1573 aa20.6■□□□□ 0.89
RNF43-205ENST00000581868 CENPBP07199 599 aaPredicted RBP20.59■□□□□ 0.89
RNF43-205ENST00000581868 CEP164Q9UPV0 1460 aa20.59■□□□□ 0.89
RNF43-205ENST00000581868 RANGAP1P46060 587 aaPredicted RBP20.58■□□□□ 0.89
RNF43-205ENST00000581868 ZNF316A6NFI3 1004 aaPredicted RBP20.57■□□□□ 0.88
RNF43-205ENST00000581868 PEG3Q9GZU2 1588 aa20.57■□□□□ 0.88
RNF43-205ENST00000581868 CLIP1P30622 1438 aa20.56■□□□□ 0.88
RNF43-205ENST00000581868 GTF3C3Q9Y5Q9 886 aa20.55■□□□□ 0.88
RNF43-205ENST00000581868 ATAD2BQ9ULI0 1458 aa20.52■□□□□ 0.88
RNF43-205ENST00000581868 APLP2Q06481 763 aa20.51■□□□□ 0.87
RNF43-205ENST00000581868 KIF21BO75037 1637 aa20.5■□□□□ 0.87
RNF43-205ENST00000581868 BAZ1BQ9UIG0 1483 aaKnown RBP20.49■□□□□ 0.87
RNF43-205ENST00000581868 RAPGEF2Q9Y4G8 1499 aa20.46■□□□□ 0.87
RNF43-205ENST00000581868 VPS8Q8N3P4 1428 aa20.46■□□□□ 0.87
RNF43-205ENST00000581868 YTHDC1Q96MU7 727 aaKnown RBP20.42■□□□□ 0.86
RNF43-205ENST00000581868 MIER1Q8N108 512 aa20.34■□□□□ 0.85
RNF43-205ENST00000581868 TOP2BQ02880 1626 aa20.29■□□□□ 0.84
RNF43-205ENST00000581868 KANK4Q5T7N3 995 aaPredicted RBP20.19■□□□□ 0.82
RNF43-205ENST00000581868 PRXQ9BXM0 1461 aa20.17■□□□□ 0.82
RNF43-205ENST00000581868 BIVM-ERCC5R4GMW8 1640 aa20.17■□□□□ 0.82
RNF43-205ENST00000581868 ARAP1Q96P48 1450 aa20.16■□□□□ 0.82
RNF43-205ENST00000581868 ERICH3Q5RHP9 1530 aa20.14■□□□□ 0.81
RNF43-205ENST00000581868 DHX57Q6P158 1386 aaKnown RBP20.11■□□□□ 0.81
RNF43-205ENST00000581868 CUX1P39880 1505 aa20.1■□□□□ 0.81
RNF43-205ENST00000581868 KIF27Q86VH2 1401 aa20.08■□□□□ 0.8
RNF43-205ENST00000581868 CLSPNQ9HAW4 1339 aa20.06■□□□□ 0.8
RNF43-205ENST00000581868 NCAPD3P42695 1498 aa20.04■□□□□ 0.8
RNF43-205ENST00000581868 ITGAEP38570 1179 aa20.04■□□□□ 0.8
RNF43-205ENST00000581868 HMGXB3Q12766 1538 aa20.01■□□□□ 0.79
RNF43-205ENST00000581868 RRBP1Q9P2E9 1410 aaKnown RBP19.98■□□□□ 0.79
RNF43-205ENST00000581868 ARHGAP35Q9NRY4 1499 aa19.96■□□□□ 0.79
RNF43-205ENST00000581868 CFTRP13569 1480 aa19.96■□□□□ 0.79
RNF43-205ENST00000581868 CCNB3Q8WWL7 1395 aa19.95■□□□□ 0.78
RNF43-205ENST00000581868 CUX2O14529 1486 aa19.88■□□□□ 0.77
RNF43-205ENST00000581868 IGF1RP08069 1367 aa19.86■□□□□ 0.77
RNF43-205ENST00000581868 RAB3GAP2Q9H2M9 1393 aa19.82■□□□□ 0.76
RNF43-205ENST00000581868 CARMIL1Q5VZK9 1371 aa19.8■□□□□ 0.76
RNF43-205ENST00000581868 P3H3Q8IVL6 736 aa19.78■□□□□ 0.76
RNF43-205ENST00000581868 ATP1B4Q9UN42 357 aaPredicted RBP19.78■□□□□ 0.76
RNF43-205ENST00000581868 FAM50AQ14320 339 aaKnown RBP19.76■□□□□ 0.75
RNF43-205ENST00000581868 TIAM1Q13009 1591 aa19.75■□□□□ 0.75
RNF43-205ENST00000581868 CADPSQ9ULU8 1353 aa19.74■□□□□ 0.75
RNF43-205ENST00000581868 FGD5Q6ZNL6 1462 aa19.73■□□□□ 0.75
RNF43-205ENST00000581868 SUPT16HQ9Y5B9 1047 aaKnown RBP19.72■□□□□ 0.75
RNF43-205ENST00000581868 PHLDB1Q86UU1 1377 aa19.71■□□□□ 0.75
RNF43-205ENST00000581868 SETD5Q9C0A6 1442 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms