RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 NISCHQ9Y2I1 1504 aa28.85■■■□□ 2.21
CUX1-211ENST00000546411 DCAF8L2P0C7V8 631 aa27.85■■■□□ 2.05
CUX1-211ENST00000546411 SUPT5HO00267 1087 aaKnown RBP27.07■■□□□ 1.92
CUX1-211ENST00000546411 SHROOM4Q9ULL8 1493 aa27.05■■□□□ 1.92
CUX1-211ENST00000546411 EHMT2Q96KQ7 1210 aa25.86■■□□□ 1.73
CUX1-211ENST00000546411 FAM9AQ8IZU1 332 aaPredicted RBP25.39■■□□□ 1.66
CUX1-211ENST00000546411 PCGF6Q9BYE7 350 aa25.3■■□□□ 1.64
CUX1-211ENST00000546411 TTBK1Q5TCY1 1321 aaPredicted RBP24.92■■□□□ 1.58
CUX1-211ENST00000546411 TRIM41Q8WV44 630 aa24.9■■□□□ 1.58
CUX1-211ENST00000546411 CHIC1Q5VXU3 224 aa24.84■■□□□ 1.57
CUX1-211ENST00000546411 LOC105371045A0A1W2PR82 267 aa24.75■■□□□ 1.55
CUX1-211ENST00000546411 PPARGC1BQ86YN6 1023 aaKnown RBP24.58■■□□□ 1.53
CUX1-211ENST00000546411 RANGAP1P46060 587 aaPredicted RBP24.54■■□□□ 1.52
CUX1-211ENST00000546411 APLP2Q06481 763 aa24.33■■□□□ 1.49
CUX1-211ENST00000546411 HRCP23327 699 aa24.28■■□□□ 1.48
CUX1-211ENST00000546411 UBTFP17480 764 aaKnown RBP24.28■■□□□ 1.48
CUX1-211ENST00000546411 CCER1Q8TC90 406 aaPredicted RBP24.22■■□□□ 1.47
CUX1-211ENST00000546411 ABCC9O60706 1549 aa24.19■■□□□ 1.46
CUX1-211ENST00000546411 TRIM26Q12899 539 aaPredicted RBP24.18■■□□□ 1.46
CUX1-211ENST00000546411 ZCCHC6Q5VYS8 1495 aaKnown RBP24.04■■□□□ 1.44
CUX1-211ENST00000546411 ZEB1P37275 1124 aaPredicted RBP24.02■■□□□ 1.44
CUX1-211ENST00000546411 PABPN1Q86U42 306 aaKnown RBP eCLIP23.91■■□□□ 1.42
CUX1-211ENST00000546411 ATP1B4Q9UN42 357 aaPredicted RBP23.84■■□□□ 1.41
CUX1-211ENST00000546411 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.71■■□□□ 1.39
CUX1-211ENST00000546411 HNRNPUL2Q1KMD3 747 aaKnown RBP23.63■■□□□ 1.37
CUX1-211ENST00000546411 YTHDC1Q96MU7 727 aaKnown RBP23.62■■□□□ 1.37
CUX1-211ENST00000546411 SCRIBQ14160 1630 aa23.58■■□□□ 1.37
CUX1-211ENST00000546411 MYO15BQ96JP2 1530 aa23.58■■□□□ 1.37
CUX1-211ENST00000546411 CCDC180Q9P1Z9 1646 aa23.55■■□□□ 1.36
CUX1-211ENST00000546411 ITGAEP38570 1179 aa23.53■■□□□ 1.36
CUX1-211ENST00000546411 CENPBP07199 599 aaPredicted RBP23.52■■□□□ 1.36
CUX1-211ENST00000546411 RSF1Q96T23 1441 aaPredicted RBP23.19■■□□□ 1.3
CUX1-211ENST00000546411 PELP1Q8IZL8 1130 aaKnown RBP23.18■■□□□ 1.3
CUX1-211ENST00000546411 CSRNP3Q8WYN3 585 aa23.17■■□□□ 1.3
CUX1-211ENST00000546411 DIEXFQ68CQ4 756 aaKnown RBP23.15■■□□□ 1.3
CUX1-211ENST00000546411 DCAF1Q9Y4B6 1507 aa23.09■■□□□ 1.29
CUX1-211ENST00000546411 CECR2Q9BXF3 1484 aa22.91■■□□□ 1.26
CUX1-211ENST00000546411 FAM50AQ14320 339 aaKnown RBP22.9■■□□□ 1.26
CUX1-211ENST00000546411 P3H3Q8IVL6 736 aa22.86■■□□□ 1.25
CUX1-211ENST00000546411 CNGB1Q14028 1251 aaPredicted RBP22.78■■□□□ 1.24
CUX1-211ENST00000546411 NEUROD1Q13562 356 aa22.77■■□□□ 1.24
CUX1-211ENST00000546411 GTF3C3Q9Y5Q9 886 aa22.72■■□□□ 1.23
CUX1-211ENST00000546411 ZNF316A6NFI3 1004 aaPredicted RBP22.7■■□□□ 1.22
CUX1-211ENST00000546411 POLR3GLQ9BT43 218 aa22.68■■□□□ 1.22
CUX1-211ENST00000546411 NEFLP07196 543 aa22.67■■□□□ 1.22
CUX1-211ENST00000546411 RB1CC1Q8TDY2 1594 aa22.63■■□□□ 1.21
CUX1-211ENST00000546411 ARID3CA6NKF2 412 aa22.61■■□□□ 1.21
CUX1-211ENST00000546411 NACADO15069 1562 aa22.61■■□□□ 1.21
CUX1-211ENST00000546411 MROH2BQ7Z745 1585 aa22.57■■□□□ 1.2
CUX1-211ENST00000546411 CEP162Q5TB80 1403 aa22.51■■□□□ 1.19
CUX1-211ENST00000546411 ACIN1Q9UKV3 1341 aaKnown RBP22.51■■□□□ 1.19
CUX1-211ENST00000546411 TRIM52Q96A61 297 aa22.5■■□□□ 1.19
CUX1-211ENST00000546411 SOGA1O94964 1423 aa22.43■■□□□ 1.18
CUX1-211ENST00000546411 CLIP1P30622 1438 aa22.43■■□□□ 1.18
CUX1-211ENST00000546411 WRNQ14191 1432 aaPredicted RBP eCLIP22.41■■□□□ 1.186e-6■■■□□ 16.7
CUX1-211ENST00000546411 FBLN2P98095 1184 aa22.4■■□□□ 1.18
CUX1-211ENST00000546411 BCANQ96GW7 911 aa22.37■■□□□ 1.17
CUX1-211ENST00000546411 BAZ1AQ9NRL2 1556 aaPredicted RBP22.37■■□□□ 1.17
CUX1-211ENST00000546411 ERICH6Q7L0X2 663 aa22.36■■□□□ 1.17
CUX1-211ENST00000546411 MYT1Q01538 1121 aa22.34■■□□□ 1.17
CUX1-211ENST00000546411 ABCC8Q09428 1581 aa22.32■■□□□ 1.16
CUX1-211ENST00000546411 MYT1LQ9UL68 1186 aa22.32■■□□□ 1.16
CUX1-211ENST00000546411 SCAF1Q9H7N4 1312 aaKnown RBP22.31■■□□□ 1.16
CUX1-211ENST00000546411 CCDC88BA6NC98 1476 aa22.29■■□□□ 1.16
CUX1-211ENST00000546411 TNIKQ9UKE5 1360 aa22.28■■□□□ 1.16
CUX1-211ENST00000546411 GOLGA3Q08378 1498 aa22.27■■□□□ 1.16
CUX1-211ENST00000546411 ZNF326Q5BKZ1 582 aaKnown RBP22.27■■□□□ 1.16
CUX1-211ENST00000546411 WIZO95785 1651 aa22.26■■□□□ 1.15
CUX1-211ENST00000546411 MIER1Q8N108 512 aa22.26■■□□□ 1.15
CUX1-211ENST00000546411 BAZ1BQ9UIG0 1483 aaKnown RBP22.25■■□□□ 1.15
CUX1-211ENST00000546411 EEA1Q15075 1411 aa22.21■■□□□ 1.15
CUX1-211ENST00000546411 HIRIP3Q9BW71 556 aaPredicted RBP22.19■■□□□ 1.14
CUX1-211ENST00000546411 DDX10Q13206 875 aaKnown RBP22.17■■□□□ 1.14
CUX1-211ENST00000546411 ANP32CO43423 234 aa22.16■■□□□ 1.14
CUX1-211ENST00000546411 CHIC2Q9UKJ5 165 aa22.14■■□□□ 1.13
CUX1-211ENST00000546411 ZNF777Q9ULD5 760 aaPredicted RBP22.12■■□□□ 1.13
CUX1-211ENST00000546411 CEP164Q9UPV0 1460 aa22.08■■□□□ 1.13
CUX1-211ENST00000546411 RUSC2Q8N2Y8 1516 aa22■■□□□ 1.11
CUX1-211ENST00000546411 KIF27Q86VH2 1401 aa21.97■■□□□ 1.11
CUX1-211ENST00000546411 TONSLQ96HA7 1378 aa21.97■■□□□ 1.11
CUX1-211ENST00000546411 KANK4Q5T7N3 995 aaPredicted RBP21.96■■□□□ 1.11
CUX1-211ENST00000546411 MTUS2Q5JR59 1369 aa21.93■■□□□ 1.1
CUX1-211ENST00000546411 RRP7BPQ9NSQ0 103 aa21.9■■□□□ 1.1
CUX1-211ENST00000546411 SIN3AQ96ST3 1273 aa21.88■■□□□ 1.09
CUX1-211ENST00000546411 TOP2AP11388 1531 aaKnown RBP21.88■■□□□ 1.09
CUX1-211ENST00000546411 SLC4A1APQ9BWU0 796 aaKnown RBP21.86■■□□□ 1.09
CUX1-211ENST00000546411 FKBP8Q14318 412 aa21.85■■□□□ 1.09
CUX1-211ENST00000546411 CDK11AQ9UQ88 783 aaPredicted RBP21.82■■□□□ 1.08
CUX1-211ENST00000546411 VPS8Q8N3P4 1428 aa21.81■■□□□ 1.08
CUX1-211ENST00000546411 HNRNPUQ00839 825 aaKnown RBP eCLIP21.79■■□□□ 1.08
CUX1-211ENST00000546411 CUX2O14529 1486 aa21.79■■□□□ 1.08
CUX1-211ENST00000546411 SMARCA4P51532 1647 aa21.76■■□□□ 1.07
CUX1-211ENST00000546411 FAM9BQ8IZU0 186 aa21.75■■□□□ 1.07
CUX1-211ENST00000546411 CARMIL1Q5VZK9 1371 aa21.74■■□□□ 1.07
CUX1-211ENST00000546411 RAPGEF2Q9Y4G8 1499 aa21.74■■□□□ 1.07
CUX1-211ENST00000546411 CCNB3Q8WWL7 1395 aa21.72■■□□□ 1.07
CUX1-211ENST00000546411 ATAD2BQ9ULI0 1458 aa21.71■■□□□ 1.07
CUX1-211ENST00000546411 CHMP7Q8WUX9 453 aaPredicted RBP21.67■■□□□ 1.06
CUX1-211ENST00000546411 SENP3-EIF4A1A0A087X0R7 540 aa21.66■■□□□ 1.06
CUX1-211ENST00000546411 IRX6P78412 446 aaPredicted RBP21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms