RNA–Protein interactions for RNA: ENST00000555616.5

ACTN1-215, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 919 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-215ENST00000555616 NISCHQ9Y2I1 1504 aa23.71■■□□□ 1.39
ACTN1-215ENST00000555616 CCDC180Q9P1Z9 1646 aa21.19■□□□□ 0.98
ACTN1-215ENST00000555616 ABCC9O60706 1549 aa20.8■□□□□ 0.92
ACTN1-215ENST00000555616 RB1CC1Q8TDY2 1594 aa19.99■□□□□ 0.79
ACTN1-215ENST00000555616 NACADO15069 1562 aa19.93■□□□□ 0.78
ACTN1-215ENST00000555616 MYO15BQ96JP2 1530 aa19.81■□□□□ 0.76
ACTN1-215ENST00000555616 ZCCHC6Q5VYS8 1495 aaKnown RBP19.76■□□□□ 0.75
ACTN1-215ENST00000555616 DCAF8L2P0C7V8 631 aa19.7■□□□□ 0.74
ACTN1-215ENST00000555616 DCAF1Q9Y4B6 1507 aa19.66■□□□□ 0.74
ACTN1-215ENST00000555616 UNC13AQ9UPW8 1703 aa19.49■□□□□ 0.71
ACTN1-215ENST00000555616 BICRAQ9NZM4 1560 aa19.4■□□□□ 0.7
ACTN1-215ENST00000555616 PABPN1Q86U42 306 aaKnown RBP eCLIP19.36■□□□□ 0.69
ACTN1-215ENST00000555616 DNAJC5BQ9UF47 199 aa19.32■□□□□ 0.68
ACTN1-215ENST00000555616 SCRIBQ14160 1630 aa19.27■□□□□ 0.68
ACTN1-215ENST00000555616 SHROOM4Q9ULL8 1493 aa19.26■□□□□ 0.67
ACTN1-215ENST00000555616 EIF4G1Q04637 1599 aaKnown RBP18.89■□□□□ 0.62
ACTN1-215ENST00000555616 CC2D2AQ9P2K1 1620 aa18.83■□□□□ 0.61
ACTN1-215ENST00000555616 CECR2Q9BXF3 1484 aa18.72■□□□□ 0.59
ACTN1-215ENST00000555616 SMARCA4P51532 1647 aa18.45■□□□□ 0.54
ACTN1-215ENST00000555616 BAZ1AQ9NRL2 1556 aaPredicted RBP18.4■□□□□ 0.54
ACTN1-215ENST00000555616 NCAPD3P42695 1498 aa18.39■□□□□ 0.54
ACTN1-215ENST00000555616 ATAD2BQ9ULI0 1458 aa18.37■□□□□ 0.53
ACTN1-215ENST00000555616 SMARCA2P51531 1590 aa18.35■□□□□ 0.53
ACTN1-215ENST00000555616 HMGXB3Q12766 1538 aa18.32■□□□□ 0.52
ACTN1-215ENST00000555616 PEG3Q9GZU2 1588 aa18.3■□□□□ 0.52
ACTN1-215ENST00000555616 MROH2BQ7Z745 1585 aa18.26■□□□□ 0.51
ACTN1-215ENST00000555616 BAZ1BQ9UIG0 1483 aaKnown RBP18.2■□□□□ 0.5
ACTN1-215ENST00000555616 WIZO95785 1651 aa18.03■□□□□ 0.48
ACTN1-215ENST00000555616 RSF1Q96T23 1441 aaPredicted RBP17.99■□□□□ 0.47
ACTN1-215ENST00000555616 NESP48681 1621 aa17.96■□□□□ 0.47
ACTN1-215ENST00000555616 ERCC6Q03468 1493 aa17.95■□□□□ 0.46
ACTN1-215ENST00000555616 CUX2O14529 1486 aa17.94■□□□□ 0.46
ACTN1-215ENST00000555616 LAMC3Q9Y6N6 1575 aa17.93■□□□□ 0.46
ACTN1-215ENST00000555616 DNAJC5Q9H3Z4 198 aa17.91■□□□□ 0.46
ACTN1-215ENST00000555616 TOP2AP11388 1531 aaKnown RBP17.88■□□□□ 0.45
ACTN1-215ENST00000555616 CADPSQ9ULU8 1353 aa17.82■□□□□ 0.44
ACTN1-215ENST00000555616 PDS5BQ9NTI5 1447 aa17.79■□□□□ 0.44
ACTN1-215ENST00000555616 THOC2Q8NI27 1593 aaKnown RBP17.79■□□□□ 0.44
ACTN1-215ENST00000555616 KIF21AQ7Z4S6 1674 aa17.75■□□□□ 0.43
ACTN1-215ENST00000555616 CFTRP13569 1480 aa17.71■□□□□ 0.43
ACTN1-215ENST00000555616 MRC2Q9UBG0 1479 aa17.64■□□□□ 0.41
ACTN1-215ENST00000555616 CCDC88BA6NC98 1476 aa17.63■□□□□ 0.41
ACTN1-215ENST00000555616 FANCD2Q9BXW9 1451 aa17.63■□□□□ 0.41
ACTN1-215ENST00000555616 CEP164Q9UPV0 1460 aa17.63■□□□□ 0.41
ACTN1-215ENST00000555616 WDR62O43379 1518 aa17.62■□□□□ 0.41
ACTN1-215ENST00000555616 PRDM2Q13029 1718 aa17.55■□□□□ 0.4
ACTN1-215ENST00000555616 URB2Q14146 1524 aaKnown RBP17.47■□□□□ 0.39
ACTN1-215ENST00000555616 TOPBP1Q92547 1522 aa17.33■□□□□ 0.37
ACTN1-215ENST00000555616 ABCC8Q09428 1581 aa17.32■□□□□ 0.36
ACTN1-215ENST00000555616 DNMBPQ6XZF7 1577 aa17.32■□□□□ 0.36
ACTN1-215ENST00000555616 SUPT5HO00267 1087 aaKnown RBP17.3■□□□□ 0.36
ACTN1-215ENST00000555616 IFT140Q96RY7 1462 aa17.27■□□□□ 0.36
ACTN1-215ENST00000555616 ZNF608Q9ULD9 1512 aaPredicted RBP17.19■□□□□ 0.34
ACTN1-215ENST00000555616 POLA1P09884 1462 aaPredicted RBP17.18■□□□□ 0.34
ACTN1-215ENST00000555616 TARBP1Q13395 1621 aaKnown RBP17.18■□□□□ 0.34
ACTN1-215ENST00000555616 CUX1P39880 1505 aa17.15■□□□□ 0.34
ACTN1-215ENST00000555616 EIF4G3O43432 1585 aaKnown RBP17.15■□□□□ 0.34
ACTN1-215ENST00000555616 FGD5Q6ZNL6 1462 aa17.12■□□□□ 0.33
ACTN1-215ENST00000555616 RAD54L2Q9Y4B4 1467 aa17.07■□□□□ 0.32
ACTN1-215ENST00000555616 WDR97A6NE52 1622 aa17.07■□□□□ 0.32
ACTN1-215ENST00000555616 SOGA1O94964 1423 aa17.06■□□□□ 0.32
ACTN1-215ENST00000555616 AQRO60306 1485 aaKnown RBP eCLIP17.04■□□□□ 0.323e-10■■■■■ 47.9
ACTN1-215ENST00000555616 OSCARQ8IYS5 282 aa17■□□□□ 0.31
ACTN1-215ENST00000555616 BIVM-ERCC5R4GMW8 1640 aa16.98■□□□□ 0.31
ACTN1-215ENST00000555616 TDRD9Q8NDG6 1382 aaKnown RBP16.98■□□□□ 0.31
ACTN1-215ENST00000555616 WRNQ14191 1432 aaPredicted RBP eCLIP16.97■□□□□ 0.31
ACTN1-215ENST00000555616 TOP2BQ02880 1626 aa16.97■□□□□ 0.31
ACTN1-215ENST00000555616 SYNJ1O43426 1573 aa16.96■□□□□ 0.31
ACTN1-215ENST00000555616 ABCA10Q8WWZ4 1543 aa16.96■□□□□ 0.3
ACTN1-215ENST00000555616 GRIN2BQ13224 1484 aa16.93■□□□□ 0.3
ACTN1-215ENST00000555616 ABCA5Q8WWZ7 1642 aa16.92■□□□□ 0.3
ACTN1-215ENST00000555616 SNAPC4Q5SXM2 1469 aa16.92■□□□□ 0.3
ACTN1-215ENST00000555616 MAGI1Q96QZ7 1491 aaPredicted RBP16.92■□□□□ 0.3
ACTN1-215ENST00000555616 CHD1O14646 1710 aa16.91■□□□□ 0.3
ACTN1-215ENST00000555616 GAPVD1Q14C86 1478 aa16.88■□□□□ 0.29
ACTN1-215ENST00000555616 TRIM41Q8WV44 630 aa16.88■□□□□ 0.29
ACTN1-215ENST00000555616 PBRM1Q86U86 1689 aa16.87■□□□□ 0.29
ACTN1-215ENST00000555616 SYNJ2O15056 1496 aa16.84■□□□□ 0.29
ACTN1-215ENST00000555616 RIMBP3CA6NJZ7 1639 aa16.81■□□□□ 0.28
ACTN1-215ENST00000555616 RIMBP3BA6NNM3 1639 aa16.81■□□□□ 0.28
ACTN1-215ENST00000555616 RIMBP3Q9UFD9 1639 aa16.81■□□□□ 0.28
ACTN1-215ENST00000555616 ARHGEF11O15085 1522 aa16.8■□□□□ 0.28
ACTN1-215ENST00000555616 FBLN2P98095 1184 aa16.79■□□□□ 0.28
ACTN1-215ENST00000555616 CLASP1Q7Z460 1538 aa16.79■□□□□ 0.28
ACTN1-215ENST00000555616 ADAMTS12P58397 1594 aa16.77■□□□□ 0.28
ACTN1-215ENST00000555616 CHMP7Q8WUX9 453 aaPredicted RBP16.76■□□□□ 0.27
ACTN1-215ENST00000555616 ERICH3Q5RHP9 1530 aa16.75■□□□□ 0.27
ACTN1-215ENST00000555616 GRIN2AQ12879 1464 aa16.71■□□□□ 0.27
ACTN1-215ENST00000555616 FHAD1B1AJZ9 1412 aa16.7■□□□□ 0.26
ACTN1-215ENST00000555616 NUP160Q12769 1436 aa16.66■□□□□ 0.26
ACTN1-215ENST00000555616 ARAP1Q96P48 1450 aa16.66■□□□□ 0.26
ACTN1-215ENST00000555616 CEP170Q5SW79 1584 aa16.64■□□□□ 0.25
ACTN1-215ENST00000555616 KIF27Q86VH2 1401 aa16.62■□□□□ 0.25
ACTN1-215ENST00000555616 CUL7Q14999 1698 aa16.57■□□□□ 0.24
ACTN1-215ENST00000555616 SHROOM2Q13796 1616 aa16.56■□□□□ 0.24
ACTN1-215ENST00000555616 IGF1RP08069 1367 aa16.55■□□□□ 0.24
ACTN1-215ENST00000555616 CYB5RLQ6IPT4 315 aa16.55■□□□□ 0.24
ACTN1-215ENST00000555616 RUSC2Q8N2Y8 1516 aa16.54■□□□□ 0.24
ACTN1-215ENST00000555616 ERCC6L2Q5T890 1561 aa16.5■□□□□ 0.23
ACTN1-215ENST00000555616 CARMIL1Q5VZK9 1371 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms