RNA–Protein interactions for RNA: ENST00000438964.6

ACTN1-204, Transcript of actinin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene ACTN1, Length 3,043 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-204ENST00000438964 NISCHQ9Y2I1 1504 aa25.19■■□□□ 1.62
ACTN1-204ENST00000438964 SHROOM4Q9ULL8 1493 aa23.03■■□□□ 1.28
ACTN1-204ENST00000438964 SUPT5HO00267 1087 aaKnown RBP22.88■■□□□ 1.25
ACTN1-204ENST00000438964 PPARGC1BQ86YN6 1023 aaKnown RBP22.63■■□□□ 1.21
ACTN1-204ENST00000438964 HRCP23327 699 aa22.62■■□□□ 1.21
ACTN1-204ENST00000438964 PCGF6Q9BYE7 350 aa22.55■■□□□ 1.2
ACTN1-204ENST00000438964 MYO15BQ96JP2 1530 aa22.31■■□□□ 1.16
ACTN1-204ENST00000438964 CHIC1Q5VXU3 224 aa22.13■■□□□ 1.13
ACTN1-204ENST00000438964 LOC105371045A0A1W2PR82 267 aa21.93■■□□□ 1.1
ACTN1-204ENST00000438964 DCAF8L2P0C7V8 631 aa21.88■■□□□ 1.09
ACTN1-204ENST00000438964 SCAF1Q9H7N4 1312 aaKnown RBP21.53■■□□□ 1.04
ACTN1-204ENST00000438964 EHMT2Q96KQ7 1210 aa21.51■■□□□ 1.03
ACTN1-204ENST00000438964 TRIM26Q12899 539 aaPredicted RBP21.47■■□□□ 1.03
ACTN1-204ENST00000438964 DCAF1Q9Y4B6 1507 aa21.38■■□□□ 1.01
ACTN1-204ENST00000438964 ZCCHC6Q5VYS8 1495 aaKnown RBP21.36■■□□□ 1.01
ACTN1-204ENST00000438964 PELP1Q8IZL8 1130 aaKnown RBP21.32■■□□□ 1
ACTN1-204ENST00000438964 FAM9AQ8IZU1 332 aaPredicted RBP21.29■■□□□ 1
ACTN1-204ENST00000438964 CCDC180Q9P1Z9 1646 aa21.1■□□□□ 0.97
ACTN1-204ENST00000438964 ZEB1P37275 1124 aaPredicted RBP21.05■□□□□ 0.96
ACTN1-204ENST00000438964 NEUROD1Q13562 356 aa21.01■□□□□ 0.95
ACTN1-204ENST00000438964 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.96■□□□□ 0.95
ACTN1-204ENST00000438964 TRIM41Q8WV44 630 aa20.92■□□□□ 0.94
ACTN1-204ENST00000438964 TTBK1Q5TCY1 1321 aaPredicted RBP20.91■□□□□ 0.94
ACTN1-204ENST00000438964 GTF3C3Q9Y5Q9 886 aa20.9■□□□□ 0.94
ACTN1-204ENST00000438964 ACIN1Q9UKV3 1341 aaKnown RBP20.88■□□□□ 0.93
ACTN1-204ENST00000438964 CCER1Q8TC90 406 aaPredicted RBP20.78■□□□□ 0.92
ACTN1-204ENST00000438964 YTHDC1Q96MU7 727 aaKnown RBP20.7■□□□□ 0.9
ACTN1-204ENST00000438964 DIEXFQ68CQ4 756 aaKnown RBP20.67■□□□□ 0.9
ACTN1-204ENST00000438964 CENPBP07199 599 aaPredicted RBP20.56■□□□□ 0.88
ACTN1-204ENST00000438964 RSF1Q96T23 1441 aaPredicted RBP20.4■□□□□ 0.86
ACTN1-204ENST00000438964 RB1CC1Q8TDY2 1594 aa20.4■□□□□ 0.86
ACTN1-204ENST00000438964 MYT1Q01538 1121 aa20.29■□□□□ 0.84
ACTN1-204ENST00000438964 ABCC9O60706 1549 aa20.28■□□□□ 0.84
ACTN1-204ENST00000438964 SCRIBQ14160 1630 aa20.25■□□□□ 0.83
ACTN1-204ENST00000438964 MIER1Q8N108 512 aa20.24■□□□□ 0.83
ACTN1-204ENST00000438964 ZNF316A6NFI3 1004 aaPredicted RBP20.18■□□□□ 0.82
ACTN1-204ENST00000438964 HNRNPUL2Q1KMD3 747 aaKnown RBP20.1■□□□□ 0.81
ACTN1-204ENST00000438964 CECR2Q9BXF3 1484 aa20.01■□□□□ 0.79
ACTN1-204ENST00000438964 UBTFP17480 764 aaKnown RBP19.97■□□□□ 0.79
ACTN1-204ENST00000438964 RANGAP1P46060 587 aaPredicted RBP19.94■□□□□ 0.78
ACTN1-204ENST00000438964 CEP162Q5TB80 1403 aa19.87■□□□□ 0.77
ACTN1-204ENST00000438964 MROH2BQ7Z745 1585 aa19.86■□□□□ 0.77
ACTN1-204ENST00000438964 ABCC8Q09428 1581 aa19.83■□□□□ 0.76
ACTN1-204ENST00000438964 WIZO95785 1651 aa19.82■□□□□ 0.76
ACTN1-204ENST00000438964 CCDC88BA6NC98 1476 aa19.8■□□□□ 0.76
ACTN1-204ENST00000438964 SOGA1O94964 1423 aa19.79■□□□□ 0.76
ACTN1-204ENST00000438964 SUPT16HQ9Y5B9 1047 aaKnown RBP19.79■□□□□ 0.76
ACTN1-204ENST00000438964 BCANQ96GW7 911 aa19.77■□□□□ 0.76
ACTN1-204ENST00000438964 RUSC2Q8N2Y8 1516 aa19.72■□□□□ 0.75
ACTN1-204ENST00000438964 TSHZ2Q9NRE2 1034 aa19.68■□□□□ 0.74
ACTN1-204ENST00000438964 WRNQ14191 1432 aaPredicted RBP eCLIP19.67■□□□□ 0.74
ACTN1-204ENST00000438964 CSRNP3Q8WYN3 585 aa19.65■□□□□ 0.74
ACTN1-204ENST00000438964 KCNH8Q96L42 1107 aa19.64■□□□□ 0.73
ACTN1-204ENST00000438964 BCL11AQ9H165 835 aa19.6■□□□□ 0.73
ACTN1-204ENST00000438964 TNIKQ9UKE5 1360 aa19.58■□□□□ 0.72
ACTN1-204ENST00000438964 ANP32EQ9BTT0 268 aa19.57■□□□□ 0.72
ACTN1-204ENST00000438964 APLP2Q06481 763 aa19.51■□□□□ 0.71
ACTN1-204ENST00000438964 ITGAEP38570 1179 aa19.46■□□□□ 0.71
ACTN1-204ENST00000438964 EIF4G1Q04637 1599 aaKnown RBP19.45■□□□□ 0.7
ACTN1-204ENST00000438964 FKBP8Q14318 412 aa19.42■□□□□ 0.7
ACTN1-204ENST00000438964 BAZ1AQ9NRL2 1556 aaPredicted RBP19.39■□□□□ 0.69
ACTN1-204ENST00000438964 GOLGA3Q08378 1498 aa19.36■□□□□ 0.69
ACTN1-204ENST00000438964 CLIP1P30622 1438 aa19.35■□□□□ 0.69
ACTN1-204ENST00000438964 HIRIP3Q9BW71 556 aaPredicted RBP19.33■□□□□ 0.68
ACTN1-204ENST00000438964 DHX57Q6P158 1386 aaKnown RBP19.3■□□□□ 0.68
ACTN1-204ENST00000438964 TRIM52Q96A61 297 aa19.28■□□□□ 0.68
ACTN1-204ENST00000438964 NACADO15069 1562 aa19.28■□□□□ 0.68
ACTN1-204ENST00000438964 DDX10Q13206 875 aaKnown RBP19.26■□□□□ 0.67
ACTN1-204ENST00000438964 KANK4Q5T7N3 995 aaPredicted RBP19.26■□□□□ 0.67
ACTN1-204ENST00000438964 RBM19Q9Y4C8 960 aaKnown RBP19.24■□□□□ 0.67
ACTN1-204ENST00000438964 SMARCA2P51531 1590 aa19.22■□□□□ 0.67
ACTN1-204ENST00000438964 VPS8Q8N3P4 1428 aa19.21■□□□□ 0.67
ACTN1-204ENST00000438964 CLSPNQ9HAW4 1339 aa19.2■□□□□ 0.66
ACTN1-204ENST00000438964 TOP2AP11388 1531 aaKnown RBP19.18■□□□□ 0.66
ACTN1-204ENST00000438964 RAPGEF2Q9Y4G8 1499 aa19.17■□□□□ 0.66
ACTN1-204ENST00000438964 IRX6P78412 446 aaPredicted RBP19.17■□□□□ 0.66
ACTN1-204ENST00000438964 EEA1Q15075 1411 aa19.16■□□□□ 0.66
ACTN1-204ENST00000438964 CEP164Q9UPV0 1460 aa19.13■□□□□ 0.65
ACTN1-204ENST00000438964 PABPN1Q86U42 306 aaKnown RBP eCLIP19.13■□□□□ 0.65
ACTN1-204ENST00000438964 MSH5O43196 834 aa19.11■□□□□ 0.65
ACTN1-204ENST00000438964 NEFLP07196 543 aa19.11■□□□□ 0.65
ACTN1-204ENST00000438964 SIN3AQ96ST3 1273 aa19.1■□□□□ 0.65
ACTN1-204ENST00000438964 KIF21BO75037 1637 aa19.05■□□□□ 0.64
ACTN1-204ENST00000438964 SYNJ1O43426 1573 aa19.04■□□□□ 0.64
ACTN1-204ENST00000438964 SMARCA4P51532 1647 aa19.03■□□□□ 0.64
ACTN1-204ENST00000438964 ERICH6Q7L0X2 663 aa18.95■□□□□ 0.62
ACTN1-204ENST00000438964 RAB3GAP2Q9H2M9 1393 aa18.92■□□□□ 0.62
ACTN1-204ENST00000438964 FAM50AQ14320 339 aaKnown RBP18.9■□□□□ 0.62
ACTN1-204ENST00000438964 ATP1B4Q9UN42 357 aaPredicted RBP18.9■□□□□ 0.62
ACTN1-204ENST00000438964 ANP32CO43423 234 aa18.87■□□□□ 0.61
ACTN1-204ENST00000438964 CCNB3Q8WWL7 1395 aa18.87■□□□□ 0.61
ACTN1-204ENST00000438964 WDR97A6NE52 1622 aa18.87■□□□□ 0.61
ACTN1-204ENST00000438964 ARAP1Q96P48 1450 aa18.86■□□□□ 0.61
ACTN1-204ENST00000438964 PPP1R15AO75807 674 aaPredicted RBP18.84■□□□□ 0.61
ACTN1-204ENST00000438964 HNRNPUQ00839 825 aaKnown RBP eCLIP18.84■□□□□ 0.613e-7■■□□□ 13
ACTN1-204ENST00000438964 BAZ1BQ9UIG0 1483 aaKnown RBP18.8■□□□□ 0.6
ACTN1-204ENST00000438964 MAPKBP1O60336 1514 aa18.79■□□□□ 0.6
ACTN1-204ENST00000438964 NBR1Q14596 966 aa18.79■□□□□ 0.6
ACTN1-204ENST00000438964 P3H3Q8IVL6 736 aa18.78■□□□□ 0.6
ACTN1-204ENST00000438964 CDK11AQ9UQ88 783 aaPredicted RBP18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms