RNA–Protein interactions for RNA: ENST00000418336.6

PKNOX1-202, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-202ENST00000418336 NISCHQ9Y2I1 1504 aa50.99■■■■■ 5.75
PKNOX1-202ENST00000418336 CCDC180Q9P1Z9 1646 aa45.41■■■■■ 4.86
PKNOX1-202ENST00000418336 ABCC9O60706 1549 aa44.6■■■■■ 4.73
PKNOX1-202ENST00000418336 RB1CC1Q8TDY2 1594 aa42.79■■■■■ 4.44
PKNOX1-202ENST00000418336 NACADO15069 1562 aa42.73■■■■■ 4.43
PKNOX1-202ENST00000418336 MYO15BQ96JP2 1530 aa42.48■■■■■ 4.39
PKNOX1-202ENST00000418336 ZCCHC6Q5VYS8 1495 aaKnown RBP42.46■■■■■ 4.39
PKNOX1-202ENST00000418336 DCAF8L2P0C7V8 631 aa42.39■■■■■ 4.38
PKNOX1-202ENST00000418336 DCAF1Q9Y4B6 1507 aa42.21■■■■■ 4.35
PKNOX1-202ENST00000418336 UNC13AQ9UPW8 1703 aa41.95■■■■■ 4.31
PKNOX1-202ENST00000418336 BICRAQ9NZM4 1560 aa41.69■■■■■ 4.26
PKNOX1-202ENST00000418336 PABPN1Q86U42 306 aaKnown RBP eCLIP41.62■■■■■ 4.25
PKNOX1-202ENST00000418336 SCRIBQ14160 1630 aa41.38■■■■■ 4.21
PKNOX1-202ENST00000418336 DNAJC5BQ9UF47 199 aa41.29■■■■■ 4.2
PKNOX1-202ENST00000418336 SHROOM4Q9ULL8 1493 aa41.12■■■■■ 4.17
PKNOX1-202ENST00000418336 EIF4G1Q04637 1599 aaKnown RBP40.51■■■■■ 4.08
PKNOX1-202ENST00000418336 CC2D2AQ9P2K1 1620 aa40.39■■■■■ 4.06
PKNOX1-202ENST00000418336 CECR2Q9BXF3 1484 aa40.11■■■■■ 4.01
PKNOX1-202ENST00000418336 SMARCA4P51532 1647 aa39.61■■■■□ 3.93
PKNOX1-202ENST00000418336 NCAPD3P42695 1498 aa39.48■■■■□ 3.91
PKNOX1-202ENST00000418336 BAZ1AQ9NRL2 1556 aaPredicted RBP39.47■■■■□ 3.91
PKNOX1-202ENST00000418336 ATAD2BQ9ULI0 1458 aa39.46■■■■□ 3.91
PKNOX1-202ENST00000418336 MROH2BQ7Z745 1585 aa39.33■■■■□ 3.89
PKNOX1-202ENST00000418336 SMARCA2P51531 1590 aa39.32■■■■□ 3.88
PKNOX1-202ENST00000418336 PEG3Q9GZU2 1588 aa39.29■■■■□ 3.88
PKNOX1-202ENST00000418336 HMGXB3Q12766 1538 aa39.25■■■■□ 3.87
PKNOX1-202ENST00000418336 BAZ1BQ9UIG0 1483 aaKnown RBP39.02■■■■□ 3.84
PKNOX1-202ENST00000418336 WIZO95785 1651 aa38.87■■■■□ 3.81
PKNOX1-202ENST00000418336 RSF1Q96T23 1441 aaPredicted RBP38.78■■■■□ 3.8
PKNOX1-202ENST00000418336 NESP48681 1621 aa38.61■■■■□ 3.77
PKNOX1-202ENST00000418336 TOP2AP11388 1531 aaKnown RBP38.42■■■■□ 3.74
PKNOX1-202ENST00000418336 LAMC3Q9Y6N6 1575 aa38.41■■■■□ 3.74
PKNOX1-202ENST00000418336 ERCC6Q03468 1493 aa38.35■■■■□ 3.73
PKNOX1-202ENST00000418336 CADPSQ9ULU8 1353 aa38.26■■■■□ 3.72
PKNOX1-202ENST00000418336 CUX2O14529 1486 aa38.15■■■■□ 3.7
PKNOX1-202ENST00000418336 KIF21AQ7Z4S6 1674 aa38.12■■■■□ 3.69
PKNOX1-202ENST00000418336 THOC2Q8NI27 1593 aaKnown RBP38.11■■■■□ 3.69
PKNOX1-202ENST00000418336 PDS5BQ9NTI5 1447 aa38.09■■■■□ 3.69
PKNOX1-202ENST00000418336 CFTRP13569 1480 aa38.04■■■■□ 3.68
PKNOX1-202ENST00000418336 CCDC88BA6NC98 1476 aa37.97■■■■□ 3.67
PKNOX1-202ENST00000418336 FANCD2Q9BXW9 1451 aa37.81■■■■□ 3.64
PKNOX1-202ENST00000418336 MRC2Q9UBG0 1479 aa37.78■■■■□ 3.64
PKNOX1-202ENST00000418336 CEP164Q9UPV0 1460 aa37.74■■■■□ 3.63
PKNOX1-202ENST00000418336 WDR62O43379 1518 aa37.73■■■■□ 3.63
PKNOX1-202ENST00000418336 PRDM2Q13029 1718 aa37.7■■■■□ 3.63
PKNOX1-202ENST00000418336 URB2Q14146 1524 aaKnown RBP37.53■■■■□ 3.6
PKNOX1-202ENST00000418336 SUPT5HO00267 1087 aaKnown RBP37.39■■■■□ 3.58
PKNOX1-202ENST00000418336 DNAJC5Q9H3Z4 198 aa37.25■■■■□ 3.55
PKNOX1-202ENST00000418336 TOPBP1Q92547 1522 aa37.21■■■■□ 3.55
PKNOX1-202ENST00000418336 DNMBPQ6XZF7 1577 aa37.14■■■■□ 3.54
PKNOX1-202ENST00000418336 ABCC8Q09428 1581 aa37.1■■■■□ 3.53
PKNOX1-202ENST00000418336 IFT140Q96RY7 1462 aa37■■■■□ 3.51
PKNOX1-202ENST00000418336 ZNF608Q9ULD9 1512 aaPredicted RBP36.93■■■■□ 3.5
PKNOX1-202ENST00000418336 POLA1P09884 1462 aaPredicted RBP36.9■■■■□ 3.5
PKNOX1-202ENST00000418336 CUX1P39880 1505 aa36.9■■■■□ 3.5
PKNOX1-202ENST00000418336 TARBP1Q13395 1621 aaKnown RBP36.89■■■■□ 3.5
PKNOX1-202ENST00000418336 FGD5Q6ZNL6 1462 aa36.75■■■■□ 3.47
PKNOX1-202ENST00000418336 RAD54L2Q9Y4B4 1467 aa36.74■■■■□ 3.47
PKNOX1-202ENST00000418336 EIF4G3O43432 1585 aaKnown RBP36.74■■■■□ 3.47
PKNOX1-202ENST00000418336 SOGA1O94964 1423 aa36.66■■■■□ 3.46
PKNOX1-202ENST00000418336 AQRO60306 1485 aaKnown RBP eCLIP36.63■■■■□ 3.45
PKNOX1-202ENST00000418336 WDR97A6NE52 1622 aa36.55■■■■□ 3.44
PKNOX1-202ENST00000418336 TDRD9Q8NDG6 1382 aaKnown RBP36.51■■■■□ 3.43
PKNOX1-202ENST00000418336 SYNJ1O43426 1573 aa36.5■■■■□ 3.43
PKNOX1-202ENST00000418336 BIVM-ERCC5R4GMW8 1640 aa36.5■■■■□ 3.43
PKNOX1-202ENST00000418336 TOP2BQ02880 1626 aa36.49■■■■□ 3.43
PKNOX1-202ENST00000418336 WRNQ14191 1432 aaPredicted RBP eCLIP36.47■■■■□ 3.435e-6■■■■■ 29.2
PKNOX1-202ENST00000418336 OSCARQ8IYS5 282 aa36.43■■■■□ 3.42
PKNOX1-202ENST00000418336 ABCA10Q8WWZ4 1543 aa36.4■■■■□ 3.42
PKNOX1-202ENST00000418336 ABCA5Q8WWZ7 1642 aa36.32■■■■□ 3.4
PKNOX1-202ENST00000418336 CHD1O14646 1710 aa36.31■■■■□ 3.4
PKNOX1-202ENST00000418336 SNAPC4Q5SXM2 1469 aa36.29■■■■□ 3.4
PKNOX1-202ENST00000418336 GRIN2BQ13224 1484 aa36.27■■■■□ 3.4
PKNOX1-202ENST00000418336 GAPVD1Q14C86 1478 aa36.24■■■■□ 3.39
PKNOX1-202ENST00000418336 PBRM1Q86U86 1689 aa36.22■■■■□ 3.39
PKNOX1-202ENST00000418336 MAGI1Q96QZ7 1491 aaPredicted RBP36.21■■■■□ 3.39
PKNOX1-202ENST00000418336 SYNJ2O15056 1496 aa36.09■■■■□ 3.37
PKNOX1-202ENST00000418336 FBLN2P98095 1184 aa36.04■■■■□ 3.36
PKNOX1-202ENST00000418336 RIMBP3CA6NJZ7 1639 aa36.01■■■■□ 3.35
PKNOX1-202ENST00000418336 RIMBP3BA6NNM3 1639 aa36.01■■■■□ 3.35
PKNOX1-202ENST00000418336 RIMBP3Q9UFD9 1639 aa36.01■■■■□ 3.35
PKNOX1-202ENST00000418336 CLASP1Q7Z460 1538 aa35.98■■■■□ 3.35
PKNOX1-202ENST00000418336 ARHGEF11O15085 1522 aa35.97■■■■□ 3.35
PKNOX1-202ENST00000418336 ADAMTS12P58397 1594 aa35.96■■■■□ 3.35
PKNOX1-202ENST00000418336 CHMP7Q8WUX9 453 aaPredicted RBP35.95■■■■□ 3.35
PKNOX1-202ENST00000418336 ERICH3Q5RHP9 1530 aa35.94■■■■□ 3.34
PKNOX1-202ENST00000418336 GRIN2AQ12879 1464 aa35.84■■■■□ 3.33
PKNOX1-202ENST00000418336 FHAD1B1AJZ9 1412 aa35.83■■■■□ 3.33
PKNOX1-202ENST00000418336 TRIM41Q8WV44 630 aa35.76■■■■□ 3.32
PKNOX1-202ENST00000418336 NUP160Q12769 1436 aa35.74■■■■□ 3.31
PKNOX1-202ENST00000418336 CEP170Q5SW79 1584 aa35.73■■■■□ 3.31
PKNOX1-202ENST00000418336 ARAP1Q96P48 1450 aa35.7■■■■□ 3.31
PKNOX1-202ENST00000418336 IGF1RP08069 1367 aa35.68■■■■□ 3.3
PKNOX1-202ENST00000418336 KIF27Q86VH2 1401 aa35.67■■■■□ 3.3
PKNOX1-202ENST00000418336 SHROOM2Q13796 1616 aa35.54■■■■□ 3.28
PKNOX1-202ENST00000418336 CUL7Q14999 1698 aa35.53■■■■□ 3.28
PKNOX1-202ENST00000418336 CYB5RLQ6IPT4 315 aa35.51■■■■□ 3.28
PKNOX1-202ENST00000418336 ERCC6L2Q5T890 1561 aa35.49■■■■□ 3.27
PKNOX1-202ENST00000418336 RUSC2Q8N2Y8 1516 aa35.45■■■■□ 3.27
PKNOX1-202ENST00000418336 CARMIL1Q5VZK9 1371 aa35.38■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms