RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 NISCHQ9Y2I1 1504 aa28.2■■■□□ 2.1
CUX1-215ENST00000556210 DCAF8L2P0C7V8 631 aa26.49■■□□□ 1.83
CUX1-215ENST00000556210 SHROOM4Q9ULL8 1493 aa26.16■■□□□ 1.78
CUX1-215ENST00000556210 SUPT5HO00267 1087 aaKnown RBP25.99■■□□□ 1.75
CUX1-215ENST00000556210 EHMT2Q96KQ7 1210 aa24.79■■□□□ 1.56
CUX1-215ENST00000556210 FAM9AQ8IZU1 332 aaPredicted RBP24.35■■□□□ 1.49
CUX1-215ENST00000556210 PCGF6Q9BYE7 350 aa24.34■■□□□ 1.49
CUX1-215ENST00000556210 CHIC1Q5VXU3 224 aa24.12■■□□□ 1.45
CUX1-215ENST00000556210 LOC105371045A0A1W2PR82 267 aa24.06■■□□□ 1.44
CUX1-215ENST00000556210 TTBK1Q5TCY1 1321 aaPredicted RBP23.86■■□□□ 1.41
CUX1-215ENST00000556210 TRIM41Q8WV44 630 aa23.82■■□□□ 1.4
CUX1-215ENST00000556210 PPARGC1BQ86YN6 1023 aaKnown RBP23.74■■□□□ 1.39
CUX1-215ENST00000556210 HRCP23327 699 aa23.65■■□□□ 1.38
CUX1-215ENST00000556210 ZCCHC6Q5VYS8 1495 aaKnown RBP23.58■■□□□ 1.36
CUX1-215ENST00000556210 ABCC9O60706 1549 aa23.43■■□□□ 1.34
CUX1-215ENST00000556210 RANGAP1P46060 587 aaPredicted RBP23.42■■□□□ 1.34
CUX1-215ENST00000556210 MYO15BQ96JP2 1530 aa23.32■■□□□ 1.32
CUX1-215ENST00000556210 TRIM26Q12899 539 aaPredicted RBP23.2■■□□□ 1.31
CUX1-215ENST00000556210 UBTFP17480 764 aaKnown RBP23.1■■□□□ 1.29
CUX1-215ENST00000556210 PABPN1Q86U42 306 aaKnown RBP eCLIP23.09■■□□□ 1.29
CUX1-215ENST00000556210 CCDC180Q9P1Z9 1646 aa23.05■■□□□ 1.28
CUX1-215ENST00000556210 CCER1Q8TC90 406 aaPredicted RBP23.04■■□□□ 1.28
CUX1-215ENST00000556210 SCRIBQ14160 1630 aa22.99■■□□□ 1.27
CUX1-215ENST00000556210 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.86■■□□□ 1.25
CUX1-215ENST00000556210 APLP2Q06481 763 aa22.83■■□□□ 1.25
CUX1-215ENST00000556210 ZEB1P37275 1124 aaPredicted RBP22.79■■□□□ 1.24
CUX1-215ENST00000556210 RSF1Q96T23 1441 aaPredicted RBP22.67■■□□□ 1.22
CUX1-215ENST00000556210 PELP1Q8IZL8 1130 aaKnown RBP22.65■■□□□ 1.22
CUX1-215ENST00000556210 HNRNPUL2Q1KMD3 747 aaKnown RBP22.62■■□□□ 1.21
CUX1-215ENST00000556210 ATP1B4Q9UN42 357 aaPredicted RBP22.55■■□□□ 1.2
CUX1-215ENST00000556210 YTHDC1Q96MU7 727 aaKnown RBP22.54■■□□□ 1.2
CUX1-215ENST00000556210 CECR2Q9BXF3 1484 aa22.49■■□□□ 1.19
CUX1-215ENST00000556210 ITGAEP38570 1179 aa22.44■■□□□ 1.18
CUX1-215ENST00000556210 DCAF1Q9Y4B6 1507 aa22.42■■□□□ 1.18
CUX1-215ENST00000556210 CENPBP07199 599 aaPredicted RBP22.28■■□□□ 1.16
CUX1-215ENST00000556210 CSRNP3Q8WYN3 585 aa22.28■■□□□ 1.16
CUX1-215ENST00000556210 RB1CC1Q8TDY2 1594 aa22.25■■□□□ 1.15
CUX1-215ENST00000556210 DIEXFQ68CQ4 756 aaKnown RBP22.17■■□□□ 1.14
CUX1-215ENST00000556210 MROH2BQ7Z745 1585 aa22.15■■□□□ 1.14
CUX1-215ENST00000556210 SCAF1Q9H7N4 1312 aaKnown RBP22.11■■□□□ 1.13
CUX1-215ENST00000556210 NACADO15069 1562 aa21.96■■□□□ 1.11
CUX1-215ENST00000556210 P3H3Q8IVL6 736 aa21.95■■□□□ 1.1
CUX1-215ENST00000556210 GTF3C3Q9Y5Q9 886 aa21.94■■□□□ 1.1
CUX1-215ENST00000556210 SOGA1O94964 1423 aa21.91■■□□□ 1.1
CUX1-215ENST00000556210 ACIN1Q9UKV3 1341 aaKnown RBP21.91■■□□□ 1.1
CUX1-215ENST00000556210 WIZO95785 1651 aa21.9■■□□□ 1.1
CUX1-215ENST00000556210 ABCC8Q09428 1581 aa21.88■■□□□ 1.09
CUX1-215ENST00000556210 CCDC88BA6NC98 1476 aa21.83■■□□□ 1.08
CUX1-215ENST00000556210 NEUROD1Q13562 356 aa21.82■■□□□ 1.08
CUX1-215ENST00000556210 CEP162Q5TB80 1403 aa21.81■■□□□ 1.08
CUX1-215ENST00000556210 FAM50AQ14320 339 aaKnown RBP21.8■■□□□ 1.08
CUX1-215ENST00000556210 MYT1Q01538 1121 aa21.76■■□□□ 1.07
CUX1-215ENST00000556210 ZNF316A6NFI3 1004 aaPredicted RBP21.75■■□□□ 1.07
CUX1-215ENST00000556210 BAZ1AQ9NRL2 1556 aaPredicted RBP21.72■■□□□ 1.07
CUX1-215ENST00000556210 WRNQ14191 1432 aaPredicted RBP eCLIP21.68■■□□□ 1.066e-6■■■□□ 16.7
CUX1-215ENST00000556210 ARID3CA6NKF2 412 aa21.67■■□□□ 1.06
CUX1-215ENST00000556210 CNGB1Q14028 1251 aaPredicted RBP21.65■■□□□ 1.06
CUX1-215ENST00000556210 RUSC2Q8N2Y8 1516 aa21.65■■□□□ 1.06
CUX1-215ENST00000556210 CLIP1P30622 1438 aa21.62■■□□□ 1.05
CUX1-215ENST00000556210 TNIKQ9UKE5 1360 aa21.55■■□□□ 1.04
CUX1-215ENST00000556210 MIER1Q8N108 512 aa21.53■■□□□ 1.04
CUX1-215ENST00000556210 BAZ1BQ9UIG0 1483 aaKnown RBP21.49■■□□□ 1.03
CUX1-215ENST00000556210 GOLGA3Q08378 1498 aa21.48■■□□□ 1.03
CUX1-215ENST00000556210 HIRIP3Q9BW71 556 aaPredicted RBP21.44■■□□□ 1.02
CUX1-215ENST00000556210 POLR3GLQ9BT43 218 aa21.41■■□□□ 1.02
CUX1-215ENST00000556210 BCANQ96GW7 911 aa21.39■■□□□ 1.01
CUX1-215ENST00000556210 KANK4Q5T7N3 995 aaPredicted RBP21.38■■□□□ 1.01
CUX1-215ENST00000556210 TOP2AP11388 1531 aaKnown RBP21.35■■□□□ 1.01
CUX1-215ENST00000556210 EEA1Q15075 1411 aa21.34■■□□□ 1.01
CUX1-215ENST00000556210 TRIM52Q96A61 297 aa21.33■■□□□ 1
CUX1-215ENST00000556210 SMARCA4P51532 1647 aa21.3■■□□□ 1
CUX1-215ENST00000556210 CEP164Q9UPV0 1460 aa21.3■■□□□ 1
CUX1-215ENST00000556210 FBLN2P98095 1184 aa21.27■■□□□ 1
CUX1-215ENST00000556210 DDX10Q13206 875 aaKnown RBP21.25■□□□□ 0.99
CUX1-215ENST00000556210 CHIC2Q9UKJ5 165 aa21.22■□□□□ 0.99
CUX1-215ENST00000556210 RAPGEF2Q9Y4G8 1499 aa21.22■□□□□ 0.99
CUX1-215ENST00000556210 SMARCA2P51531 1590 aa21.21■□□□□ 0.99
CUX1-215ENST00000556210 NEFLP07196 543 aa21.2■□□□□ 0.98
CUX1-215ENST00000556210 SIN3AQ96ST3 1273 aa21.17■□□□□ 0.98
CUX1-215ENST00000556210 ATAD2BQ9ULI0 1458 aa21.17■□□□□ 0.98
CUX1-215ENST00000556210 ZNF326Q5BKZ1 582 aaKnown RBP21.13■□□□□ 0.97
CUX1-215ENST00000556210 KIF27Q86VH2 1401 aa21.12■□□□□ 0.97
CUX1-215ENST00000556210 VPS8Q8N3P4 1428 aa21.11■□□□□ 0.97
CUX1-215ENST00000556210 ZNF777Q9ULD5 760 aaPredicted RBP21.04■□□□□ 0.96
CUX1-215ENST00000556210 CUX2O14529 1486 aa21.03■□□□□ 0.96
CUX1-215ENST00000556210 RRP7BPQ9NSQ0 103 aa21.02■□□□□ 0.96
CUX1-215ENST00000556210 ANP32CO43423 234 aa20.99■□□□□ 0.95
CUX1-215ENST00000556210 CARMIL1Q5VZK9 1371 aa20.96■□□□□ 0.95
CUX1-215ENST00000556210 MTUS2Q5JR59 1369 aa20.93■□□□□ 0.94
CUX1-215ENST00000556210 SENP3-EIF4A1A0A087X0R7 540 aa20.93■□□□□ 0.94
CUX1-215ENST00000556210 CCNB3Q8WWL7 1395 aa20.93■□□□□ 0.94
CUX1-215ENST00000556210 TONSLQ96HA7 1378 aa20.9■□□□□ 0.94
CUX1-215ENST00000556210 SYNJ1O43426 1573 aa20.89■□□□□ 0.94
CUX1-215ENST00000556210 FKBP8Q14318 412 aa20.89■□□□□ 0.93
CUX1-215ENST00000556210 MYT1LQ9UL68 1186 aa20.87■□□□□ 0.93
CUX1-215ENST00000556210 KCNH8Q96L42 1107 aa20.87■□□□□ 0.93
CUX1-215ENST00000556210 TDRD9Q8NDG6 1382 aaKnown RBP20.85■□□□□ 0.93
CUX1-215ENST00000556210 ERICH6Q7L0X2 663 aa20.84■□□□□ 0.93
CUX1-215ENST00000556210 IRX6P78412 446 aaPredicted RBP20.81■□□□□ 0.92
CUX1-215ENST00000556210 RAB3GAP2Q9H2M9 1393 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms