RNA–Protein interactions for RNA: ENST00000291547.9

PKNOX1-201, Transcript of PBX/knotted 1 homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PKNOX1, Length 5,003 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-201ENST00000291547 NISCHQ9Y2I1 1504 aa19.53■□□□□ 0.72
PKNOX1-201ENST00000291547 DCAF8L2P0C7V8 631 aa17.9■□□□□ 0.46
PKNOX1-201ENST00000291547 PELP1Q8IZL8 1130 aaKnown RBP17.67■□□□□ 0.42
PKNOX1-201ENST00000291547 MYT1Q01538 1121 aa17.59■□□□□ 0.41
PKNOX1-201ENST00000291547 SUPT5HO00267 1087 aaKnown RBP17.23■□□□□ 0.35
PKNOX1-201ENST00000291547 SHROOM4Q9ULL8 1493 aa17.04■□□□□ 0.32
PKNOX1-201ENST00000291547 EHMT2Q96KQ7 1210 aa16.9■□□□□ 0.3
PKNOX1-201ENST00000291547 ERICH6Q7L0X2 663 aa16.72■□□□□ 0.27
PKNOX1-201ENST00000291547 CCDC180Q9P1Z9 1646 aa16.66■□□□□ 0.26
PKNOX1-201ENST00000291547 APLP2Q06481 763 aa16.62■□□□□ 0.25
PKNOX1-201ENST00000291547 ABCC9O60706 1549 aa16.59■□□□□ 0.25
PKNOX1-201ENST00000291547 CENPBP07199 599 aaPredicted RBP16.59■□□□□ 0.25
PKNOX1-201ENST00000291547 CCER1Q8TC90 406 aaPredicted RBP16.57■□□□□ 0.24
PKNOX1-201ENST00000291547 PCGF6Q9BYE7 350 aa16.52■□□□□ 0.23
PKNOX1-201ENST00000291547 TTBK1Q5TCY1 1321 aaPredicted RBP16.44■□□□□ 0.22
PKNOX1-201ENST00000291547 FAM9AQ8IZU1 332 aaPredicted RBP16.34■□□□□ 0.21
PKNOX1-201ENST00000291547 HRCP23327 699 aa16.33■□□□□ 0.2
PKNOX1-201ENST00000291547 ZEB1P37275 1124 aaPredicted RBP16.28■□□□□ 0.2
PKNOX1-201ENST00000291547 ZCCHC6Q5VYS8 1495 aaKnown RBP16.27■□□□□ 0.2
PKNOX1-201ENST00000291547 NEFLP07196 543 aa16.23■□□□□ 0.19
PKNOX1-201ENST00000291547 YTHDC1Q96MU7 727 aaKnown RBP16.16■□□□□ 0.18
PKNOX1-201ENST00000291547 RANGAP1P46060 587 aaPredicted RBP16.03■□□□□ 0.16
PKNOX1-201ENST00000291547 PABPN1Q86U42 306 aaKnown RBP eCLIP15.98■□□□□ 0.15
PKNOX1-201ENST00000291547 SCRIBQ14160 1630 aa15.9■□□□□ 0.14
PKNOX1-201ENST00000291547 ATP1B4Q9UN42 357 aaPredicted RBP15.9■□□□□ 0.14
PKNOX1-201ENST00000291547 RB1CC1Q8TDY2 1594 aa15.87■□□□□ 0.13
PKNOX1-201ENST00000291547 DAXXQ9UER7 740 aaPredicted RBP15.87■□□□□ 0.13
PKNOX1-201ENST00000291547 NACADO15069 1562 aa15.86■□□□□ 0.13
PKNOX1-201ENST00000291547 TRIM41Q8WV44 630 aa15.85■□□□□ 0.13
PKNOX1-201ENST00000291547 DCAF1Q9Y4B6 1507 aa15.83■□□□□ 0.12
PKNOX1-201ENST00000291547 UBTFP17480 764 aaKnown RBP15.77■□□□□ 0.12
PKNOX1-201ENST00000291547 PPARGC1BQ86YN6 1023 aaKnown RBP15.68■□□□□ 0.1
PKNOX1-201ENST00000291547 TRIM26Q12899 539 aaPredicted RBP15.6■□□□□ 0.09
PKNOX1-201ENST00000291547 RTL5Q5HYW3 569 aaPredicted RBP15.59■□□□□ 0.09
PKNOX1-201ENST00000291547 MYO15BQ96JP2 1530 aa15.56■□□□□ 0.08
PKNOX1-201ENST00000291547 POLR3GLQ9BT43 218 aa15.55■□□□□ 0.08
PKNOX1-201ENST00000291547 CNGB1Q14028 1251 aaPredicted RBP15.46■□□□□ 0.07
PKNOX1-201ENST00000291547 ZNF316A6NFI3 1004 aaPredicted RBP15.46■□□□□ 0.07
PKNOX1-201ENST00000291547 ITGAEP38570 1179 aa15.44■□□□□ 0.06
PKNOX1-201ENST00000291547 CHIC1Q5VXU3 224 aa15.43■□□□□ 0.06
PKNOX1-201ENST00000291547 CLSPNQ9HAW4 1339 aa15.4■□□□□ 0.06
PKNOX1-201ENST00000291547 ACIN1Q9UKV3 1341 aaKnown RBP15.4■□□□□ 0.06
PKNOX1-201ENST00000291547 SCAF1Q9H7N4 1312 aaKnown RBP15.37■□□□□ 0.05
PKNOX1-201ENST00000291547 GTF3C3Q9Y5Q9 886 aa15.35■□□□□ 0.05
PKNOX1-201ENST00000291547 HNRNPUL2Q1KMD3 747 aaKnown RBP15.34■□□□□ 0.05
PKNOX1-201ENST00000291547 RSF1Q96T23 1441 aaPredicted RBP15.31■□□□□ 0.04
PKNOX1-201ENST00000291547 DIEXFQ68CQ4 756 aaKnown RBP15.31■□□□□ 0.04
PKNOX1-201ENST00000291547 MYT1LQ9UL68 1186 aa15.26■□□□□ 0.03
PKNOX1-201ENST00000291547 CECR2Q9BXF3 1484 aa15.24■□□□□ 0.03
PKNOX1-201ENST00000291547 BAZ1AQ9NRL2 1556 aaPredicted RBP15.24■□□□□ 0.03
PKNOX1-201ENST00000291547 BCANQ96GW7 911 aa15.22■□□□□ 0.03
PKNOX1-201ENST00000291547 LOC105371045A0A1W2PR82 267 aa15.22■□□□□ 0.03
PKNOX1-201ENST00000291547 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.22■□□□□ 0.03
PKNOX1-201ENST00000291547 SLC4A1APQ9BWU0 796 aaKnown RBP15.18■□□□□ 0.02
PKNOX1-201ENST00000291547 CDK11AQ9UQ88 783 aaPredicted RBP15.12■□□□□ 0.01
PKNOX1-201ENST00000291547 BCL11AQ9H165 835 aa15.11■□□□□ 0.01
PKNOX1-201ENST00000291547 BAZ1BQ9UIG0 1483 aaKnown RBP15.11■□□□□ 0.01
PKNOX1-201ENST00000291547 MROH2BQ7Z745 1585 aa15.09■□□□□ 0.01
PKNOX1-201ENST00000291547 EIF5BO60841 1220 aaKnown RBP15.01□□□□□ -0.01
PKNOX1-201ENST00000291547 ANP32EQ9BTT0 268 aa14.99□□□□□ -0.01
PKNOX1-201ENST00000291547 ZBTB47Q9UFB7 747 aaPredicted RBP14.97□□□□□ -0.01
PKNOX1-201ENST00000291547 SMARCA2P51531 1590 aa14.96□□□□□ -0.02
PKNOX1-201ENST00000291547 ANP32CO43423 234 aa14.95□□□□□ -0.02
PKNOX1-201ENST00000291547 NEUROD1Q13562 356 aa14.95□□□□□ -0.02
PKNOX1-201ENST00000291547 SMARCA4P51532 1647 aa14.92□□□□□ -0.02
PKNOX1-201ENST00000291547 WIZO95785 1651 aa14.91□□□□□ -0.02
PKNOX1-201ENST00000291547 ANP32AP39687 249 aaKnown RBP14.91□□□□□ -0.02
PKNOX1-201ENST00000291547 FAM50AQ14320 339 aaKnown RBP14.9□□□□□ -0.02
PKNOX1-201ENST00000291547 TRIM52Q96A61 297 aa14.89□□□□□ -0.03
PKNOX1-201ENST00000291547 TOP2AP11388 1531 aaKnown RBP14.85□□□□□ -0.03
PKNOX1-201ENST00000291547 CSRNP3Q8WYN3 585 aa14.85□□□□□ -0.03
PKNOX1-201ENST00000291547 ATAD2BQ9ULI0 1458 aa14.84□□□□□ -0.03
PKNOX1-201ENST00000291547 CANXP27824 592 aaKnown RBP14.84□□□□□ -0.03
PKNOX1-201ENST00000291547 NPM2Q86SE8 214 aaKnown RBP14.83□□□□□ -0.03
PKNOX1-201ENST00000291547 CCDC88BA6NC98 1476 aa14.83□□□□□ -0.04
PKNOX1-201ENST00000291547 ZNF326Q5BKZ1 582 aaKnown RBP14.82□□□□□ -0.04
PKNOX1-201ENST00000291547 GLIPR1L2Q4G1C9 344 aa14.8□□□□□ -0.04
PKNOX1-201ENST00000291547 ANP32BQ92688 251 aaKnown RBP14.77□□□□□ -0.04
PKNOX1-201ENST00000291547 WRNQ14191 1432 aaPredicted RBP eCLIP14.77□□□□□ -0.055e-6■■■■■ 29.2
PKNOX1-201ENST00000291547 BICRAQ9NZM4 1560 aa14.74□□□□□ -0.05
PKNOX1-201ENST00000291547 EIF4G1Q04637 1599 aaKnown RBP14.72□□□□□ -0.05
PKNOX1-201ENST00000291547 SLC24A1O60721 1099 aa14.71□□□□□ -0.05
PKNOX1-201ENST00000291547 FBLN2P98095 1184 aa14.7□□□□□ -0.06
PKNOX1-201ENST00000291547 FKBP8Q14318 412 aa14.68□□□□□ -0.06
PKNOX1-201ENST00000291547 HSP90AA1P07900 732 aaKnown RBP14.66□□□□□ -0.06
PKNOX1-201ENST00000291547 UNC13AQ9UPW8 1703 aa14.66□□□□□ -0.06
PKNOX1-201ENST00000291547 NEFMP07197 916 aa14.66□□□□□ -0.06
PKNOX1-201ENST00000291547 PRKCSHP14314 528 aaPredicted RBP14.64□□□□□ -0.07
PKNOX1-201ENST00000291547 NCAPD3P42695 1498 aa14.63□□□□□ -0.07
PKNOX1-201ENST00000291547 EEA1Q15075 1411 aa14.62□□□□□ -0.07
PKNOX1-201ENST00000291547 ERCC6Q03468 1493 aa14.61□□□□□ -0.07
PKNOX1-201ENST00000291547 CADPSQ9ULU8 1353 aa14.6□□□□□ -0.07
PKNOX1-201ENST00000291547 NBR1Q14596 966 aa14.6□□□□□ -0.07
PKNOX1-201ENST00000291547 UPF2Q9HAU5 1272 aaKnown RBP14.58□□□□□ -0.07
PKNOX1-201ENST00000291547 ABCC8Q09428 1581 aa14.57□□□□□ -0.08
PKNOX1-201ENST00000291547 PDS5BQ9NTI5 1447 aa14.57□□□□□ -0.08
PKNOX1-201ENST00000291547 ARXQ96QS3 562 aa14.55□□□□□ -0.08
PKNOX1-201ENST00000291547 KIF27Q86VH2 1401 aa14.54□□□□□ -0.08
PKNOX1-201ENST00000291547 HNRNPUQ00839 825 aaKnown RBP eCLIP14.52□□□□□ -0.08
PKNOX1-201ENST00000291547 P3H3Q8IVL6 736 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms