RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W RPN12P32496 274 aa6.8□□□□□ -1.32
ATG4YNL223W BMH2P34730 273 aaKnown RBP6.8□□□□□ -1.32
ATG4YNL223W RPN10P38886 268 aaKnown RBP6.8□□□□□ -1.32
ATG4YNL223W CCT5P40413 562 aaKnown RBP6.8□□□□□ -1.32
ATG4YNL223W RSM25P40496 264 aa6.8□□□□□ -1.32
ATG4YNL223W MSH4P40965 878 aaPredicted RBP6.8□□□□□ -1.32
ATG4YNL223W CRF1Q04930 467 aa6.8□□□□□ -1.32
ATG4YNL223W ATG20Q07528 640 aa6.8□□□□□ -1.32
ATG4YNL223W YOR238WQ08634 303 aa6.8□□□□□ -1.32
ATG4YNL223W HCA4P20448 770 aaKnown RBP6.79□□□□□ -1.32
ATG4YNL223W MSM1P22438 575 aa6.79□□□□□ -1.32
ATG4YNL223W SWI4P25302 1093 aaKnown RBP6.79□□□□□ -1.32
ATG4YNL223W MAL31P38156 614 aa6.79□□□□□ -1.32
ATG4YNL223W UTP7P40055 554 aaKnown RBP6.79□□□□□ -1.32
ATG4YNL223W CSM2P40465 213 aa6.79□□□□□ -1.32
ATG4YNL223W MTC3P53077 123 aa6.79□□□□□ -1.32
ATG4YNL223W MYO5Q04439 1219 aaKnown RBP6.79□□□□□ -1.32
ATG4YNL223W PCL8Q08966 492 aa6.79□□□□□ -1.32
ATG4YNL223W HSP82P02829 709 aaKnown RBP6.79□□□□□ -1.32
ATG4YNL223W PGI1P12709 554 aaKnown RBP6.79□□□□□ -1.32
ATG4YNL223W DID4P36108 232 aa6.79□□□□□ -1.32
ATG4YNL223W STV1P37296 890 aa6.79□□□□□ -1.32
ATG4YNL223W YAP5P40574 245 aa6.79□□□□□ -1.32
ATG4YNL223W ALG2P43636 503 aa6.79□□□□□ -1.32
ATG4YNL223W YOR111WQ99210 232 aa6.79□□□□□ -1.32
ATG4YNL223W CDC6P09119 513 aa6.78□□□□□ -1.32
ATG4YNL223W RNR3P21672 869 aaKnown RBP6.78□□□□□ -1.32
ATG4YNL223W PRE8P23639 250 aa6.78□□□□□ -1.32
ATG4YNL223W VPS8P39702 1274 aa6.78□□□□□ -1.32
ATG4YNL223W UBP9P39967 754 aa6.78□□□□□ -1.32
ATG4YNL223W PIL1P53252 339 aaKnown RBP6.78□□□□□ -1.32
ATG4YNL223W RPT6Q01939 405 aaKnown RBP6.78□□□□□ -1.32
ATG4YNL223W TRM44Q02648 567 aaKnown RBP6.78□□□□□ -1.32
ATG4YNL223W DCS2Q12123 353 aa6.78□□□□□ -1.32
ATG4YNL223W DDP1Q99321 188 aaKnown RBP6.78□□□□□ -1.32
ATG4YNL223W GAP1P19145 602 aaPredicted RBP6.77□□□□□ -1.33
ATG4YNL223W VPS1P21576 704 aaKnown RBP6.77□□□□□ -1.33
ATG4YNL223W SRM1P21827 482 aa6.77□□□□□ -1.33
ATG4YNL223W RFT1P38206 574 aaPredicted RBP6.77□□□□□ -1.33
ATG4YNL223W RKM3P38222 552 aa6.77□□□□□ -1.33
ATG4YNL223W RXT2P38255 430 aa6.77□□□□□ -1.33
ATG4YNL223W PCI8P40512 444 aa6.77□□□□□ -1.33
ATG4YNL223W VPS4P52917 437 aa6.77□□□□□ -1.33
ATG4YNL223W RSC1P53236 928 aa6.77□□□□□ -1.33
ATG4YNL223W FPK1P53739 893 aa6.77□□□□□ -1.33
ATG4YNL223W SQS1P53866 767 aaKnown RBP6.77□□□□□ -1.33
ATG4YNL223W SEN54Q02825 467 aaPredicted RBP6.77□□□□□ -1.33
ATG4YNL223W SKG3Q06315 1026 aa6.77□□□□□ -1.33
ATG4YNL223W GDE1Q02979 1223 aa6.76□□□□□ -1.33
ATG4YNL223W ETT1Q08421 412 aaKnown RBP6.76□□□□□ -1.33
ATG4YNL223W GET3Q12154 354 aaKnown RBP6.76□□□□□ -1.33
ATG4YNL223W MET6P05694 767 aaKnown RBP6.75□□□□□ -1.33
ATG4YNL223W KIN1P13185 1064 aa6.75□□□□□ -1.33
ATG4YNL223W SRP54P20424 541 aaKnown RBP6.75□□□□□ -1.33
ATG4YNL223W ADP1P25371 1049 aa6.75□□□□□ -1.33
ATG4YNL223W RPL8BP29453 256 aaKnown RBP6.75□□□□□ -1.33
ATG4YNL223W CHS3P29465 1165 aa6.75□□□□□ -1.33
ATG4YNL223W ASF1P32447 279 aa6.75□□□□□ -1.33
ATG4YNL223W GLC3P32775 704 aa6.75□□□□□ -1.33
ATG4YNL223W FAR11P53917 953 aa6.75□□□□□ -1.33
ATG4YNL223W VPS30Q02948 557 aa6.75□□□□□ -1.33
ATG4YNL223W LCD1Q04377 747 aa6.75□□□□□ -1.33
ATG4YNL223W YDL124WQ07551 312 aaKnown RBP6.75□□□□□ -1.33
ATG4YNL223W HXK1P04806 485 aaKnown RBP6.74□□□□□ -1.33
ATG4YNL223W HPR1P17629 752 aaKnown RBP6.74□□□□□ -1.33
ATG4YNL223W ACE2P21192 770 aa6.74□□□□□ -1.33
ATG4YNL223W YBL028CP38202 106 aa6.74□□□□□ -1.33
ATG4YNL223W NPR3P38742 1146 aa6.74□□□□□ -1.33
ATG4YNL223W YPT11P48559 417 aa6.74□□□□□ -1.33
ATG4YNL223W YGR117CP53270 476 aa6.74□□□□□ -1.33
ATG4YNL223W FOL1P53848 824 aa6.74□□□□□ -1.33
ATG4YNL223W TIM50Q02776 476 aa6.74□□□□□ -1.33
ATG4YNL223W YDR341CQ05506 607 aaKnown RBP6.74□□□□□ -1.33
ATG4YNL223W DSE3Q08729 430 aa6.74□□□□□ -1.33
ATG4YNL223W CLF1Q12309 687 aaPredicted RBP6.74□□□□□ -1.33
ATG4YNL223W TRS33Q99394 268 aa6.74□□□□□ -1.33
ATG4YNL223W TUS1Q06412 1307 aa6.74□□□□□ -1.33
ATG4YNL223W PMA1P05030 918 aaKnown RBP6.73□□□□□ -1.33
ATG4YNL223W NUC1P08466 329 aa6.73□□□□□ -1.33
ATG4YNL223W GPA1P08539 472 aa6.73□□□□□ -1.33
ATG4YNL223W RGP1P16664 663 aa6.73□□□□□ -1.33
ATG4YNL223W RAD53P22216 821 aa6.73□□□□□ -1.33
ATG4YNL223W SPB4P25808 606 aaPredicted RBP6.73□□□□□ -1.33
ATG4YNL223W URA1P28272 314 aaPredicted RBP6.73□□□□□ -1.33
ATG4YNL223W MCM4P30665 933 aaKnown RBP6.73□□□□□ -1.33
ATG4YNL223W SLI15P38283 698 aa6.73□□□□□ -1.33
ATG4YNL223W TOM71P38825 639 aaKnown RBP6.73□□□□□ -1.33
ATG4YNL223W YER130CP39959 443 aa6.73□□□□□ -1.33
ATG4YNL223W FET4P40988 552 aa6.73□□□□□ -1.33
ATG4YNL223W YGL138CP53122 345 aa6.73□□□□□ -1.33
ATG4YNL223W CEX1Q12453 761 aa6.73□□□□□ -1.33
ATG4YNL223W MYO1P08964 1928 aa6.73□□□□□ -1.33
ATG4YNL223W CIT1P00890 479 aa6.73□□□□□ -1.33
ATG4YNL223W STI1P15705 589 aaKnown RBP RIP-Chip data6.73□□□□□ -1.33not detected
ATG4YNL223W CST26P38226 397 aa6.73□□□□□ -1.33
ATG4YNL223W KEL1P38853 1164 aaKnown RBP6.73□□□□□ -1.33
ATG4YNL223W PES4P39684 611 aa6.73□□□□□ -1.33
ATG4YNL223W NAF1P53919 492 aaKnown RBP6.73□□□□□ -1.33
ATG4YNL223W MDM1Q01846 1127 aa6.73□□□□□ -1.33
ATG4YNL223W CSC1Q06538 782 aa6.73□□□□□ -1.33
Retrieved 100 of 5,963 RNA–protein pairs in 45.7 ms