RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W SGS1P35187 1447 aa10.88□□□□□ -0.67
ATG4YNL223W INO80P53115 1489 aa10.71□□□□□ -0.7
ATG4YNL223W MTC1P47018 478 aaKnown RBP10.62□□□□□ -0.71
ATG4YNL223W TCB3Q03640 1545 aaKnown RBP10.62□□□□□ -0.71
ATG4YNL223W MON2P48563 1636 aaPredicted RBP10.58□□□□□ -0.72
ATG4YNL223W TY1B-DR4Q07793 1604 aa10.53□□□□□ -0.72
ATG4YNL223W SPA2P23201 1466 aaKnown RBP10.35□□□□□ -0.75
ATG4YNL223W SSN2P38931 1420 aa10.34□□□□□ -0.75
ATG4YNL223W SWR1Q05471 1514 aa10.33□□□□□ -0.76
ATG4YNL223W HSL1P34244 1518 aa10.29□□□□□ -0.76
ATG4YNL223W SPT6P23615 1451 aaKnown RBP10.25□□□□□ -0.77
ATG4YNL223W DRS1P32892 752 aaKnown RBP10.13□□□□□ -0.79
ATG4YNL223W HIR3P47171 1648 aa10.1□□□□□ -0.79
ATG4YNL223W DNA2P38859 1522 aa10.05□□□□□ -0.8
ATG4YNL223W KOG1P38873 1557 aa10□□□□□ -0.81
ATG4YNL223W XRN1P22147 1528 aaKnown RBP9.99□□□□□ -0.81
ATG4YNL223W REV3P14284 1504 aa9.86□□□□□ -0.83
ATG4YNL223W SIN3P22579 1536 aa9.81□□□□□ -0.84
ATG4YNL223W THO2P53552 1597 aaKnown RBP9.8□□□□□ -0.84
ATG4YNL223W BUD4P47136 1447 aa9.77□□□□□ -0.85
ATG4YNL223W ECM5Q03214 1411 aa9.75□□□□□ -0.85
ATG4YNL223W SSK2P53599 1579 aa9.74□□□□□ -0.85
ATG4YNL223W TAF2P23255 1407 aa9.7□□□□□ -0.86
ATG4YNL223W ATG2P53855 1592 aa9.68□□□□□ -0.86
ATG4YNL223W ESP1Q03018 1630 aa9.66□□□□□ -0.86
ATG4YNL223W PEP1P32319 1579 aa9.62□□□□□ -0.87
ATG4YNL223W MDS3P53094 1487 aa9.62□□□□□ -0.87
ATG4YNL223W MYO2P19524 1574 aaKnown RBP9.59□□□□□ -0.87
ATG4YNL223W SKI3P17883 1432 aaKnown RBP9.57□□□□□ -0.88
ATG4YNL223W YPK9Q12697 1472 aa9.51□□□□□ -0.89
ATG4YNL223W SCC2Q04002 1493 aa9.44□□□□□ -0.9
ATG4YNL223W POL1P13382 1468 aa9.43□□□□□ -0.9
ATG4YNL223W RPO31P04051 1460 aa9.39□□□□□ -0.91
ATG4YNL223W STU1P38198 1513 aa9.37□□□□□ -0.91
ATG4YNL223W UFD4P33202 1483 aa9.36□□□□□ -0.91
ATG4YNL223W RKR1Q04781 1562 aa9.34□□□□□ -0.91
ATG4YNL223W YCF1P39109 1515 aaKnown RBP9.32□□□□□ -0.92
ATG4YNL223W BPT1P14772 1559 aa9.31□□□□□ -0.92
ATG4YNL223W YOR1P53049 1477 aa9.3□□□□□ -0.92
ATG4YNL223W TY2B-LR1P0C2J3 1770 aa9.3□□□□□ -0.92
ATG4YNL223W TY2B-FP0CX63 1770 aa9.3□□□□□ -0.92
ATG4YNL223W TY2B-GR2P0CX64 1770 aa9.3□□□□□ -0.92
ATG4YNL223W TY2B-CP25384 1770 aa9.3□□□□□ -0.92
ATG4YNL223W TY2B-DR2Q03494 1770 aa9.3□□□□□ -0.92
ATG4YNL223W TY1B-DR1Q03855 1755 aa9.3□□□□□ -0.92
ATG4YNL223W TY2B-DR3Q07791 1770 aaKnown RBP9.3□□□□□ -0.92
ATG4YNL223W TY2B-OR1Q12113 1770 aa9.3□□□□□ -0.92
ATG4YNL223W TY2B-DR1Q12472 1770 aa9.3□□□□□ -0.92
ATG4YNL223W TY2B-OR2Q12501 1770 aa9.3□□□□□ -0.92
ATG4YNL223W TOP2P06786 1428 aaKnown RBP9.3□□□□□ -0.92
ATG4YNL223W RSE1Q04693 1361 aaKnown RBP9.29□□□□□ -0.92
ATG4YNL223W CHD1P32657 1468 aa9.27□□□□□ -0.93
ATG4YNL223W YTA7P40340 1379 aa9.26□□□□□ -0.93
ATG4YNL223W FAP1P53971 965 aa9.25□□□□□ -0.93
ATG4YNL223W TY1B-DR3Q99231 1755 aa9.25□□□□□ -0.93
ATG4YNL223W SMC4Q12267 1418 aa9.24□□□□□ -0.93
ATG4YNL223W MMS22Q06164 1454 aa9.22□□□□□ -0.93
ATG4YNL223W TY2B-BQ12491 1770 aa9.21□□□□□ -0.93
ATG4YNL223W MYO4P32492 1471 aa9.2□□□□□ -0.94
ATG4YNL223W TY1B-BRQ12193 1756 aa9.18□□□□□ -0.94
ATG4YNL223W TY1B-GR3Q12316 1755 aa9.18□□□□□ -0.94
ATG4YNL223W TY1B-ORQ92393 1755 aa9.18□□□□□ -0.94
ATG4YNL223W TY1B-HO13535 1793 aa9.16□□□□□ -0.94
ATG4YNL223W TY1B-DR5P0C2I2 1755 aa9.16□□□□□ -0.94
ATG4YNL223W TY1B-DR6P0C2I3 1755 aa9.16□□□□□ -0.94
ATG4YNL223W TY1B-LR2P0C2I5 1755 aa9.16□□□□□ -0.94
ATG4YNL223W TY1B-LR3P0C2I6 1755 aaKnown RBP9.16□□□□□ -0.94
ATG4YNL223W TY1B-PR1P0C2I9 1755 aaKnown RBP9.16□□□□□ -0.94
ATG4YNL223W TY1B-PR2P0C2J0 1756 aa9.16□□□□□ -0.94
ATG4YNL223W TY1B-PR3P0C2J1 1755 aaKnown RBP9.16□□□□□ -0.94
ATG4YNL223W TY1B-JR1P47098 1755 aa9.16□□□□□ -0.94
ATG4YNL223W TY1B-ML2Q03434 1755 aaKnown RBP9.16□□□□□ -0.94
ATG4YNL223W TY1B-ER1Q03612 1755 aa9.16□□□□□ -0.94
ATG4YNL223W TY1B-ML1Q04711 1755 aaKnown RBP9.16□□□□□ -0.94
ATG4YNL223W TY1B-GR2Q12269 1755 aa9.16□□□□□ -0.94
ATG4YNL223W TY1B-OLQ12273 1755 aa9.16□□□□□ -0.94
ATG4YNL223W TY1B-PLQ12414 1755 aaKnown RBP9.16□□□□□ -0.94
ATG4YNL223W CDC25P04821 1589 aa9.15□□□□□ -0.95
ATG4YNL223W SPP41P38904 1435 aa9.1□□□□□ -0.95
ATG4YNL223W PAN1P32521 1480 aa9.09□□□□□ -0.95
ATG4YNL223W RQC2Q12532 1038 aaKnown RBP9.08□□□□□ -0.96
ATG4YNL223W SNQ2P32568 1501 aaKnown RBP9.06□□□□□ -0.96
ATG4YNL223W SAS10Q12136 610 aaPredicted RBP9.05□□□□□ -0.96
ATG4YNL223W ESC1Q03661 1658 aaKnown RBP9.04□□□□□ -0.96
ATG4YNL223W VTH1P40438 1549 aa9.03□□□□□ -0.96
ATG4YNL223W VTH2P40890 1549 aa9.03□□□□□ -0.96
ATG4YNL223W TSC11P40061 1430 aa9.03□□□□□ -0.96
ATG4YNL223W DNF1P32660 1571 aa9.02□□□□□ -0.97
ATG4YNL223W STH1P32597 1359 aa9.01□□□□□ -0.97
ATG4YNL223W TY1B-JR2P47100 1755 aaKnown RBP9□□□□□ -0.97
ATG4YNL223W TY1B-ER2Q03619 1755 aa9□□□□□ -0.97
ATG4YNL223W TY1B-MR1Q04214 1755 aa9□□□□□ -0.97
ATG4YNL223W TY1B-MR2Q04670 1755 aaKnown RBP9□□□□□ -0.97
ATG4YNL223W TY1B-LR1Q12088 1755 aaKnown RBP9□□□□□ -0.97
ATG4YNL223W TY1B-NL1Q12112 1755 aa9□□□□□ -0.97
ATG4YNL223W TY1B-GR1Q12141 1755 aa9□□□□□ -0.97
ATG4YNL223W TY1B-BLQ12490 1755 aa9□□□□□ -0.97
ATG4YNL223W RPA190P10964 1664 aaKnown RBP9□□□□□ -0.97
ATG4YNL223W MLP2P40457 1679 aa9□□□□□ -0.97
ATG4YNL223W PDR15Q04182 1529 aaKnown RBP8.97□□□□□ -0.97
Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms