Protein–RNA interactions for Protein: Q04377

LCD1, DNA damage checkpoint protein LCD1, yeastyeast

Predictions only

Length 747 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
LCD1Q04377 NSR1YGR159C 1245 nt22.61■■□□□ 1.21
LCD1Q04377 YML009W-BYML009W-B 477 nt22.24■■□□□ 1.15
LCD1Q04377 NOP1YDL014W 984 nt21.34■■□□□ 1.01
LCD1Q04377 MDJ1YFL016C 1536 nt20.7■□□□□ 0.9
LCD1Q04377 YKL036CYKL036C 393 nt20.08■□□□□ 0.81
LCD1Q04377 YJL027CYJL027C 417 nt19.01■□□□□ 0.63
LCD1Q04377 Q0297Q0297 156 nt18.75■□□□□ 0.59
LCD1Q04377 SRX1YKL086W 384 nt18.65■□□□□ 0.58
LCD1Q04377 SCS3YGL126W 1143 nt18.54■□□□□ 0.56
LCD1Q04377 DBP2YNL112W 1641 nt18.07■□□□□ 0.48
LCD1Q04377 YBR190WYBR190W 312 nt17.78■□□□□ 0.44
LCD1Q04377 YCR051WYCR051W 669 nt17.67■□□□□ 0.42
LCD1Q04377 RTC3YHR087W 336 nt17.37■□□□□ 0.37
LCD1Q04377 YOL085CYOL085C 342 nt17.36■□□□□ 0.37
LCD1Q04377 TRN1tP(UGG)A 72 nt17.23■□□□□ 0.35
LCD1Q04377 SUF9tP(UGG)F 72 nt17.23■□□□□ 0.35
LCD1Q04377 SUF8tP(UGG)H 72 nt17.23■□□□□ 0.35
LCD1Q04377 tP(UGG)LtP(UGG)L 72 nt17.23■□□□□ 0.35
LCD1Q04377 SUF7tP(UGG)M 72 nt17.23■□□□□ 0.35
LCD1Q04377 tP(UGG)N1tP(UGG)N1 72 nt17.23■□□□□ 0.35
LCD1Q04377 tP(UGG)N2tP(UGG)N2 72 nt17.23■□□□□ 0.35
LCD1Q04377 tP(UGG)O1tP(UGG)O1 72 nt17.23■□□□□ 0.35
LCD1Q04377 SUF11tP(UGG)O2 72 nt17.23■□□□□ 0.35
LCD1Q04377 SCJ1YMR214W 1134 nt17.23■□□□□ 0.35
LCD1Q04377 CCC1YLR220W 969 nt17.09■□□□□ 0.33
LCD1Q04377 SSA3YBL075C 1950 nt17.04■□□□□ 0.32
LCD1Q04377 PKP1YIL042C 1185 nt16.98■□□□□ 0.31
LCD1Q04377 RPP1BYDL130W 321 nt16.81■□□□□ 0.28
LCD1Q04377 RVS167YDR388W 1449 nt16.8■□□□□ 0.28
LCD1Q04377 ATS1YAL020C 1002 nt16.76■□□□□ 0.27
LCD1Q04377 PUT4YOR348C 1884 nt16.64■□□□□ 0.25
LCD1Q04377 ARE1YCR048W 1833 nt16.16■□□□□ 0.18
LCD1Q04377 tP(UGG)O3tP(UGG)O3 72 nt16.11■□□□□ 0.17
LCD1Q04377 SHR5YOL110W 714 nt16.08■□□□□ 0.16
LCD1Q04377 POA1YBR022W 534 nt16.08■□□□□ 0.16
LCD1Q04377 URN1YPR152C 1398 nt16.02■□□□□ 0.16
LCD1Q04377 SAH1YER043C 1350 nt16■□□□□ 0.15
LCD1Q04377 SCR1SCR1 522 nt15.99■□□□□ 0.15
LCD1Q04377 PET122YER153C 765 nt15.96■□□□□ 0.15
LCD1Q04377 YHR049C-AYHR049C-A 297 nt15.94■□□□□ 0.14
LCD1Q04377 OPI9YLR338W 858 nt15.91■□□□□ 0.14
LCD1Q04377 DEP1YAL013W 1218 nt15.88■□□□□ 0.13
LCD1Q04377 BSC6YOL137W 1494 nt15.84■□□□□ 0.13
LCD1Q04377 RPN10YHR200W 807 nt15.61■□□□□ 0.09
LCD1Q04377 SPT5YML010W 3192 nt15.58■□□□□ 0.08
LCD1Q04377 RRN5YLR141W 1092 nt15.56■□□□□ 0.08
LCD1Q04377 YDJ1YNL064C 1230 nt15.56■□□□□ 0.08
LCD1Q04377 BUD23YCR047C 828 nt15.53■□□□□ 0.08
LCD1Q04377 YNL208WYNL208W 600 nt15.52■□□□□ 0.08
LCD1Q04377 PST2YDR032C 597 nt15.43■□□□□ 0.06
LCD1Q04377 PUN1YLR414C 792 nt15.43■□□□□ 0.06
LCD1Q04377 RSB1YOR049C 1065 nt15.41■□□□□ 0.06
LCD1Q04377 PTC2YER089C 1395 nt15.38■□□□□ 0.05
LCD1Q04377 GAR1YHR089C 618 nt15.35■□□□□ 0.05
LCD1Q04377 SSA4YER103W 1929 nt15.3■□□□□ 0.04
LCD1Q04377 YER088W-BYER088W-B 147 nt15.27■□□□□ 0.04
LCD1Q04377 NAB2YGL122C 1578 nt15.25■□□□□ 0.03
LCD1Q04377 YJR018WYJR018W 363 nt15.24■□□□□ 0.03
LCD1Q04377 YKL097CYKL097C 411 nt15.12■□□□□ 0.01
LCD1Q04377 FIS1YIL065C 468 nt14.98□□□□□ -0.01
LCD1Q04377 DAL1YIR027C 1383 nt14.93□□□□□ -0.02
LCD1Q04377 MEP2YNL142W 1500 nt14.92□□□□□ -0.02
LCD1Q04377 YJR120WYJR120W 351 nt14.91□□□□□ -0.02
LCD1Q04377 FPR4YLR449W 1179 nt14.91□□□□□ -0.02
LCD1Q04377 TIR1YER011W 765 nt14.86□□□□□ -0.03
LCD1Q04377 SSA1YAL005C 1929 nt14.83□□□□□ -0.04
LCD1Q04377 PHO4YFR034C 939 nt14.8□□□□□ -0.04
LCD1Q04377 BDF1YLR399C 2061 nt14.78□□□□□ -0.04
LCD1Q04377 INM2YDR287W 879 nt14.76□□□□□ -0.05
LCD1Q04377 RPP2BYDR382W 333 nt14.75□□□□□ -0.05
LCD1Q04377 YPS1YLR120C 1710 nt14.72□□□□□ -0.05
LCD1Q04377 DCW1YKL046C 1350 nt14.7□□□□□ -0.06
LCD1Q04377 SHU1YHL006C 453 nt14.64□□□□□ -0.07
LCD1Q04377 YHR165W-AYHR165W-A 312 nt14.61□□□□□ -0.07
LCD1Q04377 TAT1YBR069C 1860 nt14.56□□□□□ -0.08
LCD1Q04377 YBL100CYBL100C 315 nt14.55□□□□□ -0.08
LCD1Q04377 YDR095CYDR095C 411 nt14.52□□□□□ -0.09
LCD1Q04377 SRB2YHR041C 633 nt14.49□□□□□ -0.09
LCD1Q04377 EMI2YDR516C 1503 nt14.47□□□□□ -0.09
LCD1Q04377 YBR220CYBR220C 1683 nt14.42□□□□□ -0.1
LCD1Q04377 YMR090WYMR090W 684 nt14.39□□□□□ -0.11
LCD1Q04377 YOR139CYOR139C 393 nt14.38□□□□□ -0.11
LCD1Q04377 BDH2YAL061W 1254 nt14.36□□□□□ -0.11
LCD1Q04377 FUN26YAL022C 1554 nt14.35□□□□□ -0.11
LCD1Q04377 YDL221WYDL221W 552 nt14.32□□□□□ -0.12
LCD1Q04377 CAC2YML102W 1407 nt14.3□□□□□ -0.12
LCD1Q04377 PTP1YDL230W 1008 nt14.29□□□□□ -0.12
LCD1Q04377 ALF1YNL148C 765 nt14.26□□□□□ -0.13
LCD1Q04377 SDH1YKL148C 1923 nt14.25□□□□□ -0.13
LCD1Q04377 RPP2AYOL039W 321 nt14.25□□□□□ -0.13
LCD1Q04377 TRM9YML014W 840 nt14.21□□□□□ -0.13
LCD1Q04377 YAL037C-BYAL037C-B 975 nt14.2□□□□□ -0.14
LCD1Q04377 NPL3YDR432W 1245 nt14.16□□□□□ -0.14
LCD1Q04377 WWM1YFL010C 636 nt14.12□□□□□ -0.15
LCD1Q04377 CCT6YDR188W 1641 nt14.09□□□□□ -0.15
LCD1Q04377 SCC4YER147C 1875 nt14.08□□□□□ -0.16
LCD1Q04377 IRC15YPL017C 1500 nt14.08□□□□□ -0.16
LCD1Q04377 SIS1YNL007C 1059 nt14.07□□□□□ -0.16
LCD1Q04377 LSM3YLR438C-A 270 nt14.06□□□□□ -0.16
LCD1Q04377 GIS3YLR094C 1509 nt14.01□□□□□ -0.17
Retrieved 100 of 7,029 protein–RNA pairs in 13.2 ms