Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 RBM39-208ENST00000416108 577 ntTSL 47.47□□□□□ -1.214e-12■□□□□ 11.3
SMNDC1O75940 RBM39-218ENST00000449489 432 ntTSL 57.32□□□□□ -1.244e-12■□□□□ 11.3
SMNDC1O75940 RBM39-211ENST00000426951 840 ntTSL 1 (best)7.3□□□□□ -1.244e-12■□□□□ 11.3
SMNDC1O75940 RBM39-231ENST00000477334 949 ntTSL 27.3□□□□□ -1.244e-12■□□□□ 11.3
SMNDC1O75940 GUK1-214ENST00000460224 639 ntTSL 513.97□□□□□ -0.172e-7■□□□□ 11.3
SMNDC1O75940 GUK1-211ENST00000412265 1012 ntTSL 512.03□□□□□ -0.482e-7■□□□□ 11.3
SMNDC1O75940 GUK1-221ENST00000472939 314 ntTSL 312.01□□□□□ -0.492e-7■□□□□ 11.3
SMNDC1O75940 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.274e-10■□□□□ 11.3
SMNDC1O75940 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 14e-10■□□□□ 11.3
SMNDC1O75940 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.26■□□□□ 0.999e-7■□□□□ 11.3
SMNDC1O75940 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.16■□□□□ 0.665e-8■□□□□ 11.3
SMNDC1O75940 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.455e-8■□□□□ 11.3
SMNDC1O75940 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.454e-10■□□□□ 11.3
SMNDC1O75940 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.416e-8■□□□□ 11.3
SMNDC1O75940 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.61■□□□□ 0.414e-10■□□□□ 11.3
SMNDC1O75940 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.53■□□□□ 0.45e-8■□□□□ 11.3
SMNDC1O75940 RFC2-207ENST00000480432 871 ntTSL 317.36■□□□□ 0.374e-10■□□□□ 11.3
SMNDC1O75940 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.79■□□□□ 0.284e-10■□□□□ 11.3
SMNDC1O75940 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.72■□□□□ 0.276e-8■□□□□ 11.3
SMNDC1O75940 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.254e-10■□□□□ 11.3
SMNDC1O75940 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.145e-8■□□□□ 11.3
SMNDC1O75940 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.065e-8■□□□□ 11.3
SMNDC1O75940 MATR3-225ENST00000514528 532 ntTSL 415.25■□□□□ 0.039e-7■□□□□ 11.3
SMNDC1O75940 MATR3-208ENST00000504045 1530 ntTSL 515.14■□□□□ 0.019e-7■□□□□ 11.3
SMNDC1O75940 MATR3-220ENST00000512876 575 ntTSL 315.09■□□□□ 0.019e-7■□□□□ 11.3
SMNDC1O75940 MATR3-222ENST00000513678 444 ntTSL 215.09■□□□□ 0.019e-7■□□□□ 11.3
SMNDC1O75940 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.045e-8■□□□□ 11.3
SMNDC1O75940 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.045e-8■□□□□ 11.3
SMNDC1O75940 MELTF-AS1-201ENST00000414354 468 ntTSL 214.74□□□□□ -0.055e-8■□□□□ 11.3
SMNDC1O75940 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.076e-8■□□□□ 11.3
SMNDC1O75940 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.084e-10■□□□□ 11.3
SMNDC1O75940 SPIDR-214ENST00000521550 1849 ntTSL 213.87□□□□□ -0.195e-8■□□□□ 11.3
SMNDC1O75940 SPIDR-217ENST00000522117 2745 ntTSL 213.6□□□□□ -0.235e-8■□□□□ 11.3
SMNDC1O75940 MATR3-227ENST00000618441 4018 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.249e-7■□□□□ 11.3
SMNDC1O75940 MAGED2-207ENST00000396224 2026 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.284e-10■□□□□ 11.3
SMNDC1O75940 SPIDR-211ENST00000519401 2090 ntTSL 212.85□□□□□ -0.355e-8■□□□□ 11.3
SMNDC1O75940 CRELD1-209ENST00000482691 690 ntTSL 312.74□□□□□ -0.375e-8■□□□□ 11.3
SMNDC1O75940 CRELD1-205ENST00000435417 966 ntTSL 512.63□□□□□ -0.395e-8■□□□□ 11.3
SMNDC1O75940 MAGED2-204ENST00000375058 2048 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.414e-10■□□□□ 11.3
SMNDC1O75940 MAGED2-202ENST00000347546 2177 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.474e-10■□□□□ 11.3
SMNDC1O75940 MAGED2-205ENST00000375060 1798 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.544e-10■□□□□ 11.3
SMNDC1O75940 CRELD1-210ENST00000489674 437 ntTSL 511.52□□□□□ -0.575e-8■□□□□ 11.3
SMNDC1O75940 SPIDR-224ENST00000524126 2614 ntTSL 1 (best)11.38□□□□□ -0.595e-8■□□□□ 11.3
SMNDC1O75940 SPIDR-225ENST00000524141 2761 ntTSL 211.01□□□□□ -0.655e-8■□□□□ 11.3
SMNDC1O75940 CRELD1-208ENST00000467713 540 ntTSL 210.9□□□□□ -0.665e-8■□□□□ 11.3
SMNDC1O75940 SPIDR-206ENST00000518074 2819 ntAPPRIS ALT2 TSL 2 BASIC10.85□□□□□ -0.675e-8■□□□□ 11.3
SMNDC1O75940 UVSSA-204ENST00000505716 549 ntTSL 310.8□□□□□ -0.685e-8■□□□□ 11.3
SMNDC1O75940 SPIDR-222ENST00000524006 970 ntTSL 510.44□□□□□ -0.745e-8■□□□□ 11.3
SMNDC1O75940 SPIDR-212ENST00000519661 1035 ntTSL 210.19□□□□□ -0.785e-8■□□□□ 11.3
SMNDC1O75940 MED23-205ENST00000368068 5233 ntAPPRIS P4 TSL 1 (best) BASIC9.9□□□□□ -0.834e-10■□□□□ 11.3
SMNDC1O75940 MED23-204ENST00000368060 4446 ntAPPRIS ALT1 TSL 1 (best) BASIC9.88□□□□□ -0.834e-10■□□□□ 11.3
SMNDC1O75940 RFC2-212ENST00000497430 753 ntTSL 39.58□□□□□ -0.884e-10■□□□□ 11.3
SMNDC1O75940 RFC2-204ENST00000470266 881 ntTSL 59.32□□□□□ -0.924e-10■□□□□ 11.3
SMNDC1O75940 MATR3-201ENST00000394805 4843 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.949e-7■□□□□ 11.3
SMNDC1O75940 RFC2-211ENST00000494019 730 ntTSL 39.03□□□□□ -0.964e-10■□□□□ 11.3
SMNDC1O75940 MATR3-218ENST00000511978 573 ntTSL 38.93□□□□□ -0.989e-7■□□□□ 11.3
SMNDC1O75940 RFC2-206ENST00000479105 957 ntTSL 58.67□□□□□ -1.024e-10■□□□□ 11.3
SMNDC1O75940 SPIDR-213ENST00000521214 3577 ntTSL 28.52□□□□□ -1.055e-8■□□□□ 11.3
SMNDC1O75940 MELTF-AS1-203ENST00000424769 356 ntTSL 27.66□□□□□ -1.185e-8■□□□□ 11.3
SMNDC1O75940 MATR3-209ENST00000504311 423 ntTSL 37.47□□□□□ -1.219e-7■□□□□ 11.3
SMNDC1O75940 MATR3-217ENST00000511333 558 ntTSL 57.3□□□□□ -1.249e-7■□□□□ 11.3
SMNDC1O75940 RFC2-208ENST00000485545 847 ntTSL 37.05□□□□□ -1.284e-10■□□□□ 11.3
SMNDC1O75940 MATR3-210ENST00000504643 2560 ntTSL 27.03□□□□□ -1.289e-7■□□□□ 11.3
SMNDC1O75940 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.34e-10■□□□□ 11.3
SMNDC1O75940 MATR3-226ENST00000515833 1001 ntTSL 56.82□□□□□ -1.329e-7■□□□□ 11.3
SMNDC1O75940 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC6.8□□□□□ -1.329e-7■□□□□ 11.3
SMNDC1O75940 MATR3-216ENST00000511249 447 ntTSL 46.41□□□□□ -1.389e-7■□□□□ 11.3
SMNDC1O75940 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC6.05□□□□□ -1.449e-7■□□□□ 11.3
SMNDC1O75940 RFC2-209ENST00000491206 726 ntTSL 35.89□□□□□ -1.474e-10■□□□□ 11.3
SMNDC1O75940 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.76□□□□□ -1.499e-7■□□□□ 11.3
SMNDC1O75940 MATR3-214ENST00000509918 377 ntTSL 45.49□□□□□ -1.539e-7■□□□□ 11.3
SMNDC1O75940 DHX36-208ENST00000479934 530 ntTSL 25.46□□□□□ -1.546e-8■□□□□ 11.3
SMNDC1O75940 MATR3-211ENST00000505625 7306 ntTSL 1 (best)5.3□□□□□ -1.569e-7■□□□□ 11.3
SMNDC1O75940 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.14□□□□□ -1.594e-10■□□□□ 11.3
SMNDC1O75940 MATR3-202ENST00000502422 2250 ntTSL 1 (best)4.84□□□□□ -1.639e-7■□□□□ 11.3
SMNDC1O75940 MELTF-AS1-204ENST00000437064 306 ntTSL 34.79□□□□□ -1.645e-8■□□□□ 11.3
SMNDC1O75940 DHX36-210ENST00000481941 2612 ntTSL 24.66□□□□□ -1.666e-8■□□□□ 11.3
SMNDC1O75940 MED23-206ENST00000479213 3173 ntTSL 23.8□□□□□ -1.84e-10■□□□□ 11.3
SMNDC1O75940 SNORD63B-201ENST00000411005 70 ntBASIC1.97□□□□□ -2.093e-20■□□□□ 11.3
SMNDC1O75940 TCF25-218ENST00000566283 515 ntTSL 216.47■□□□□ 0.233e-7■□□□□ 11.3
SMNDC1O75940 TCF25-216ENST00000565860 437 ntTSL 316.47■□□□□ 0.233e-7■□□□□ 11.3
SMNDC1O75940 TCF25-213ENST00000564957 459 ntTSL 316.47■□□□□ 0.233e-7■□□□□ 11.3
SMNDC1O75940 TCF25-220ENST00000567171 1535 ntTSL 214.89□□□□□ -0.033e-7■□□□□ 11.3
SMNDC1O75940 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC15.02□□□□□ -0.018e-8■□□□□ 11.3
SMNDC1O75940 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.234e-6■□□□□ 11.3
SMNDC1O75940 NT5DC3-202ENST00000415849 799 ntTSL 54.48□□□□□ -1.694e-6■□□□□ 11.3
SMNDC1O75940 SEMA3B-203ENST00000419007 3283 ntTSL 215.93■□□□□ 0.144e-6■□□□□ 11.3
SMNDC1O75940 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.634e-7■□□□□ 11.3
SMNDC1O75940 HMBS-212ENST00000542044 1544 ntTSL 517.27■□□□□ 0.364e-7■□□□□ 11.3
SMNDC1O75940 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.18■□□□□ 0.344e-7■□□□□ 11.3
SMNDC1O75940 HMBS-226ENST00000640813 1283 ntTSL 516.74■□□□□ 0.274e-7■□□□□ 11.3
SMNDC1O75940 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.67■□□□□ 0.264e-7■□□□□ 11.3
SMNDC1O75940 HMBS-224ENST00000546226 2112 ntTSL 216.13■□□□□ 0.174e-7■□□□□ 11.3
SMNDC1O75940 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.89■□□□□ 0.134e-7■□□□□ 11.3
SMNDC1O75940 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.12■□□□□ 0.014e-7■□□□□ 11.3
SMNDC1O75940 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC12.67□□□□□ -0.384e-7■□□□□ 11.3
SMNDC1O75940 HMBS-219ENST00000544182 1542 ntTSL 212.51□□□□□ -0.414e-7■□□□□ 11.3
SMNDC1O75940 HMBS-202ENST00000392841 1411 ntTSL 1 (best) BASIC11.18□□□□□ -0.624e-7■□□□□ 11.3
SMNDC1O75940 HMBS-217ENST00000543543 1796 ntTSL 510.62□□□□□ -0.714e-7■□□□□ 11.3
SMNDC1O75940 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.3■□□□□ 0.681e-7■□□□□ 11.3
Retrieved 100 of 11,362 protein–RNA pairs in 252.8 ms