RNA–Protein interactions for RNA: ENST00000618441.5

MATR3-227, Transcript of matrin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MATR3, Length 4,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MATR3-227ENST00000618441 NISCHQ9Y2I1 1504 aa22.11■■□□□ 1.13
MATR3-227ENST00000618441 PELP1Q8IZL8 1130 aaKnown RBP20.8■□□□□ 0.92
MATR3-227ENST00000618441 PPARGC1BQ86YN6 1023 aaKnown RBP20.65■□□□□ 0.9
MATR3-227ENST00000618441 HRCP23327 699 aa20.61■□□□□ 0.89
MATR3-227ENST00000618441 SLC24A1O60721 1099 aa20.55■□□□□ 0.88
MATR3-227ENST00000618441 PCGF6Q9BYE7 350 aa20.41■□□□□ 0.86
MATR3-227ENST00000618441 MYT1Q01538 1121 aa20.12■□□□□ 0.81
MATR3-227ENST00000618441 DCAF8L2P0C7V8 631 aa20.08■□□□□ 0.81
MATR3-227ENST00000618441 SCAF1Q9H7N4 1312 aaKnown RBP19.99■□□□□ 0.79
MATR3-227ENST00000618441 SUPT5HO00267 1087 aaKnown RBP19.84■□□□□ 0.77
MATR3-227ENST00000618441 SHROOM4Q9ULL8 1493 aa19.71■□□□□ 0.75
MATR3-227ENST00000618441 PRKCSHP14314 528 aaPredicted RBP19.64■□□□□ 0.74
MATR3-227ENST00000618441 GTF3C3Q9Y5Q9 886 aa19.44■□□□□ 0.7
MATR3-227ENST00000618441 ERICH6Q7L0X2 663 aa19.4■□□□□ 0.7
MATR3-227ENST00000618441 NEUROD1Q13562 356 aa19.32■□□□□ 0.68
MATR3-227ENST00000618441 TTBK1Q5TCY1 1321 aaPredicted RBP19.29■□□□□ 0.68
MATR3-227ENST00000618441 ACIN1Q9UKV3 1341 aaKnown RBP19.29■□□□□ 0.68
MATR3-227ENST00000618441 CENPBP07199 599 aaPredicted RBP19.19■□□□□ 0.66
MATR3-227ENST00000618441 LOC105371045A0A1W2PR82 267 aa19.14■□□□□ 0.65
MATR3-227ENST00000618441 YTHDC1Q96MU7 727 aaKnown RBP19.13■□□□□ 0.65
MATR3-227ENST00000618441 TRIM26Q12899 539 aaPredicted RBP19.11■□□□□ 0.65
MATR3-227ENST00000618441 ZEB1P37275 1124 aaPredicted RBP19.1■□□□□ 0.65
MATR3-227ENST00000618441 BCL11AQ9H165 835 aa19.1■□□□□ 0.65
MATR3-227ENST00000618441 CHIC1Q5VXU3 224 aa19.06■□□□□ 0.64
MATR3-227ENST00000618441 MYO15BQ96JP2 1530 aa19.04■□□□□ 0.64
MATR3-227ENST00000618441 EHMT2Q96KQ7 1210 aa18.95■□□□□ 0.62
MATR3-227ENST00000618441 FAM9AQ8IZU1 332 aaPredicted RBP18.9■□□□□ 0.62
MATR3-227ENST00000618441 DAXXQ9UER7 740 aaPredicted RBP18.87■□□□□ 0.61
MATR3-227ENST00000618441 DIEXFQ68CQ4 756 aaKnown RBP18.79■□□□□ 0.6
MATR3-227ENST00000618441 CCER1Q8TC90 406 aaPredicted RBP18.71■□□□□ 0.58
MATR3-227ENST00000618441 ABCC9O60706 1549 aa18.7■□□□□ 0.58
MATR3-227ENST00000618441 APLP2Q06481 763 aa18.69■□□□□ 0.58
MATR3-227ENST00000618441 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.67■□□□□ 0.58
MATR3-227ENST00000618441 EIF5BO60841 1220 aaKnown RBP18.6■□□□□ 0.57
MATR3-227ENST00000618441 ANP32EQ9BTT0 268 aa18.56■□□□□ 0.56
MATR3-227ENST00000618441 CSRNP3Q8WYN3 585 aa18.53■□□□□ 0.56
MATR3-227ENST00000618441 DCAF1Q9Y4B6 1507 aa18.5■□□□□ 0.55
MATR3-227ENST00000618441 CCDC180Q9P1Z9 1646 aa18.47■□□□□ 0.55
MATR3-227ENST00000618441 ZCCHC6Q5VYS8 1495 aaKnown RBP18.47■□□□□ 0.55
MATR3-227ENST00000618441 PLPPR3Q6T4P5 718 aa18.47■□□□□ 0.55
MATR3-227ENST00000618441 BCANQ96GW7 911 aa18.3■□□□□ 0.52
MATR3-227ENST00000618441 PLEKHG5O94827 1062 aa18.26■□□□□ 0.51
MATR3-227ENST00000618441 MIER1Q8N108 512 aa18.22■□□□□ 0.51
MATR3-227ENST00000618441 RTN4Q9NQC3 1192 aaKnown RBP18.19■□□□□ 0.5
MATR3-227ENST00000618441 TSHZ2Q9NRE2 1034 aa18.17■□□□□ 0.5
MATR3-227ENST00000618441 PABPN1Q86U42 306 aaKnown RBP eCLIP18.15■□□□□ 0.52e-7■■□□□ 12.6
MATR3-227ENST00000618441 ZNF316A6NFI3 1004 aaPredicted RBP18.11■□□□□ 0.49
MATR3-227ENST00000618441 SUPT16HQ9Y5B9 1047 aaKnown RBP18.09■□□□□ 0.49
MATR3-227ENST00000618441 SCRIBQ14160 1630 aa18.07■□□□□ 0.48
MATR3-227ENST00000618441 RANGAP1P46060 587 aaPredicted RBP18.04■□□□□ 0.48
MATR3-227ENST00000618441 ANO8Q9HCE9 1232 aaPredicted RBP18■□□□□ 0.47
MATR3-227ENST00000618441 TRIM41Q8WV44 630 aa17.97■□□□□ 0.47
MATR3-227ENST00000618441 CCDC136Q96JN2 1154 aa17.92■□□□□ 0.46
MATR3-227ENST00000618441 ITGAEP38570 1179 aa17.86■□□□□ 0.45
MATR3-227ENST00000618441 PODXL2Q9NZ53 605 aa17.83■□□□□ 0.45
MATR3-227ENST00000618441 NCBP3Q53F19 620 aaKnown RBP17.82■□□□□ 0.44
MATR3-227ENST00000618441 FKBP8Q14318 412 aa17.81■□□□□ 0.44
MATR3-227ENST00000618441 KLHL34Q8N239 644 aa17.8■□□□□ 0.44
MATR3-227ENST00000618441 RBM19Q9Y4C8 960 aaKnown RBP17.78■□□□□ 0.44
MATR3-227ENST00000618441 NEFLP07196 543 aa17.74■□□□□ 0.43
MATR3-227ENST00000618441 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.74■□□□□ 0.43
MATR3-227ENST00000618441 TIMELESSQ9UNS1 1208 aa17.71■□□□□ 0.43
MATR3-227ENST00000618441 HNRNPUL2Q1KMD3 747 aaKnown RBP17.7■□□□□ 0.42
MATR3-227ENST00000618441 SALL2Q9Y467 1007 aaPredicted RBP17.7■□□□□ 0.42
MATR3-227ENST00000618441 DEKP35659 375 aaKnown RBP17.69■□□□□ 0.42
MATR3-227ENST00000618441 TULP1O00294 542 aaPredicted RBP17.68■□□□□ 0.42
MATR3-227ENST00000618441 NBR1Q14596 966 aa17.68■□□□□ 0.42
MATR3-227ENST00000618441 AEBP2Q6ZN18 517 aaPredicted RBP17.64■□□□□ 0.42
MATR3-227ENST00000618441 CECR2Q9BXF3 1484 aa17.64■□□□□ 0.41
MATR3-227ENST00000618441 CLSPNQ9HAW4 1339 aa17.57■□□□□ 0.4
MATR3-227ENST00000618441 MSH5O43196 834 aa17.56■□□□□ 0.4
MATR3-227ENST00000618441 RSF1Q96T23 1441 aaPredicted RBP17.53■□□□□ 0.4
MATR3-227ENST00000618441 NACADO15069 1562 aa17.5■□□□□ 0.39
MATR3-227ENST00000618441 RB1CC1Q8TDY2 1594 aa17.47■□□□□ 0.39
MATR3-227ENST00000618441 KCNH8Q96L42 1107 aa17.46■□□□□ 0.39
MATR3-227ENST00000618441 IRX6P78412 446 aaPredicted RBP17.45■□□□□ 0.38
MATR3-227ENST00000618441 CDK11AQ9UQ88 783 aaPredicted RBP17.41■□□□□ 0.38
MATR3-227ENST00000618441 TRIM52Q96A61 297 aa17.4■□□□□ 0.38
MATR3-227ENST00000618441 RTL5Q5HYW3 569 aaPredicted RBP17.4■□□□□ 0.38
MATR3-227ENST00000618441 IL27Q8NEV9 243 aa17.36■□□□□ 0.37
MATR3-227ENST00000618441 MROH2BQ7Z745 1585 aa17.36■□□□□ 0.37
MATR3-227ENST00000618441 MYT1LQ9UL68 1186 aa17.28■□□□□ 0.36
MATR3-227ENST00000618441 HAP1P54257 671 aaPredicted RBP17.27■□□□□ 0.36
MATR3-227ENST00000618441 ARXQ96QS3 562 aa17.27■□□□□ 0.35
MATR3-227ENST00000618441 UBTFP17480 764 aaKnown RBP17.22■□□□□ 0.35
MATR3-227ENST00000618441 UBE2Q2Q8WVN8 375 aa17.22■□□□□ 0.35
MATR3-227ENST00000618441 WIZO95785 1651 aa17.19■□□□□ 0.34
MATR3-227ENST00000618441 PKNOX2Q96KN3 472 aa17.17■□□□□ 0.34
MATR3-227ENST00000618441 DDX10Q13206 875 aaKnown RBP17.16■□□□□ 0.34
MATR3-227ENST00000618441 C14orf37Q86TY3 774 aa17.13■□□□□ 0.33
MATR3-227ENST00000618441 PDIA4P13667 645 aaKnown RBP17.12■□□□□ 0.33
MATR3-227ENST00000618441 NOP58Q9Y2X3 529 aaKnown RBP17.12■□□□□ 0.33
MATR3-227ENST00000618441 FANCIQ9NVI1 1328 aa17.11■□□□□ 0.33
MATR3-227ENST00000618441 ERICH6BQ5W0A0 696 aa17.11■□□□□ 0.33
MATR3-227ENST00000618441 PDE4CQ08493 712 aa17.1■□□□□ 0.33
MATR3-227ENST00000618441 HOMEZQ8IX15 550 aa17.1■□□□□ 0.33
MATR3-227ENST00000618441 PAK3O75914 559 aaPredicted RBP17.08■□□□□ 0.32
MATR3-227ENST00000618441 HIRIP3Q9BW71 556 aaPredicted RBP17.07■□□□□ 0.32
MATR3-227ENST00000618441 NPM2Q86SE8 214 aaKnown RBP17.06■□□□□ 0.32
MATR3-227ENST00000618441 A0A0U1RQG5 324 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms