RNA–Protein interactions for RNA: ENST00000399256.4

APOB-202, Transcript of apolipoprotein B, humanhuman

TSL 1 (best) BASIC

Gene APOB, Length 3,128 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOB-202ENST00000399256 NISCHQ9Y2I1 1504 aa28.1■■■□□ 2.09
APOB-202ENST00000399256 CCDC180Q9P1Z9 1646 aa24.57■■□□□ 1.52
APOB-202ENST00000399256 SHROOM4Q9ULL8 1493 aa24.04■■□□□ 1.44
APOB-202ENST00000399256 SUPT5HO00267 1087 aaKnown RBP23.8■■□□□ 1.4
APOB-202ENST00000399256 ZCCHC6Q5VYS8 1495 aaKnown RBP23.61■■□□□ 1.37
APOB-202ENST00000399256 HRCP23327 699 aa23.46■■□□□ 1.35
APOB-202ENST00000399256 MYO15BQ96JP2 1530 aa23.37■■□□□ 1.33
APOB-202ENST00000399256 ABCC9O60706 1549 aa23.29■■□□□ 1.32
APOB-202ENST00000399256 CHIC1Q5VXU3 224 aa23.27■■□□□ 1.32
APOB-202ENST00000399256 DCAF1Q9Y4B6 1507 aa23.24■■□□□ 1.31
APOB-202ENST00000399256 PCGF6Q9BYE7 350 aa23.19■■□□□ 1.3
APOB-202ENST00000399256 DCAF8L2P0C7V8 631 aa23.17■■□□□ 1.3
APOB-202ENST00000399256 PPARGC1BQ86YN6 1023 aaKnown RBP23.04■■□□□ 1.28
APOB-202ENST00000399256 NACADO15069 1562 aa22.88■■□□□ 1.25
APOB-202ENST00000399256 LOC105371045A0A1W2PR82 267 aa22.72■■□□□ 1.23
APOB-202ENST00000399256 RB1CC1Q8TDY2 1594 aa22.7■■□□□ 1.22
APOB-202ENST00000399256 SCRIBQ14160 1630 aa22.58■■□□□ 1.2
APOB-202ENST00000399256 TRIM26Q12899 539 aaPredicted RBP22.5■■□□□ 1.19
APOB-202ENST00000399256 UNC13AQ9UPW8 1703 aa22.3■■□□□ 1.16
APOB-202ENST00000399256 ZEB1P37275 1124 aaPredicted RBP22.17■■□□□ 1.14
APOB-202ENST00000399256 BICRAQ9NZM4 1560 aa22.06■■□□□ 1.12
APOB-202ENST00000399256 PELP1Q8IZL8 1130 aaKnown RBP22.03■■□□□ 1.12
APOB-202ENST00000399256 TRIM41Q8WV44 630 aa22.03■■□□□ 1.12
APOB-202ENST00000399256 FAM9AQ8IZU1 332 aaPredicted RBP22.02■■□□□ 1.12
APOB-202ENST00000399256 SCAF1Q9H7N4 1312 aaKnown RBP22.01■■□□□ 1.11
APOB-202ENST00000399256 EHMT2Q96KQ7 1210 aa21.95■■□□□ 1.1
APOB-202ENST00000399256 RSF1Q96T23 1441 aaPredicted RBP21.94■■□□□ 1.1
APOB-202ENST00000399256 PABPN1Q86U42 306 aaKnown RBP eCLIP21.93■■□□□ 1.1
APOB-202ENST00000399256 CECR2Q9BXF3 1484 aa21.86■■□□□ 1.09
APOB-202ENST00000399256 MROH2BQ7Z745 1585 aa21.72■■□□□ 1.07
APOB-202ENST00000399256 BAZ1AQ9NRL2 1556 aaPredicted RBP21.7■■□□□ 1.06
APOB-202ENST00000399256 SMARCA4P51532 1647 aa21.64■■□□□ 1.05
APOB-202ENST00000399256 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.62■■□□□ 1.05
APOB-202ENST00000399256 ACIN1Q9UKV3 1341 aaKnown RBP21.57■■□□□ 1.04
APOB-202ENST00000399256 CCER1Q8TC90 406 aaPredicted RBP21.56■■□□□ 1.04
APOB-202ENST00000399256 WIZO95785 1651 aa21.55■■□□□ 1.04
APOB-202ENST00000399256 NEUROD1Q13562 356 aa21.55■■□□□ 1.04
APOB-202ENST00000399256 DIEXFQ68CQ4 756 aaKnown RBP21.41■■□□□ 1.02
APOB-202ENST00000399256 GTF3C3Q9Y5Q9 886 aa21.39■■□□□ 1.01
APOB-202ENST00000399256 EIF4G1Q04637 1599 aaKnown RBP21.38■■□□□ 1.01
APOB-202ENST00000399256 PEG3Q9GZU2 1588 aa21.38■■□□□ 1.01
APOB-202ENST00000399256 TTBK1Q5TCY1 1321 aaPredicted RBP21.36■■□□□ 1.01
APOB-202ENST00000399256 CENPBP07199 599 aaPredicted RBP21.34■■□□□ 1.01
APOB-202ENST00000399256 TOP2AP11388 1531 aaKnown RBP21.31■■□□□ 1
APOB-202ENST00000399256 ATAD2BQ9ULI0 1458 aa21.29■■□□□ 1
APOB-202ENST00000399256 SMARCA2P51531 1590 aa21.27■■□□□ 1
APOB-202ENST00000399256 BAZ1BQ9UIG0 1483 aaKnown RBP21.16■□□□□ 0.98
APOB-202ENST00000399256 WRNQ14191 1432 aaPredicted RBP eCLIP21.13■□□□□ 0.97
APOB-202ENST00000399256 CEP162Q5TB80 1403 aa21.12■□□□□ 0.97
APOB-202ENST00000399256 NCAPD3P42695 1498 aa21.11■□□□□ 0.97
APOB-202ENST00000399256 ABCC8Q09428 1581 aa21.1■□□□□ 0.97
APOB-202ENST00000399256 HMGXB3Q12766 1538 aa21.09■□□□□ 0.97
APOB-202ENST00000399256 CC2D2AQ9P2K1 1620 aa21.09■□□□□ 0.97
APOB-202ENST00000399256 CCDC88BA6NC98 1476 aa21.09■□□□□ 0.97
APOB-202ENST00000399256 ZNF316A6NFI3 1004 aaPredicted RBP21.07■□□□□ 0.96
APOB-202ENST00000399256 YTHDC1Q96MU7 727 aaKnown RBP21.07■□□□□ 0.96
APOB-202ENST00000399256 MYT1Q01538 1121 aa21.03■□□□□ 0.96
APOB-202ENST00000399256 SOGA1O94964 1423 aa21■□□□□ 0.95
APOB-202ENST00000399256 TNIKQ9UKE5 1360 aa20.98■□□□□ 0.95
APOB-202ENST00000399256 UBTFP17480 764 aaKnown RBP20.95■□□□□ 0.94
APOB-202ENST00000399256 MIER1Q8N108 512 aa20.9■□□□□ 0.94
APOB-202ENST00000399256 RUSC2Q8N2Y8 1516 aa20.89■□□□□ 0.94
APOB-202ENST00000399256 CSRNP3Q8WYN3 585 aa20.89■□□□□ 0.93
APOB-202ENST00000399256 HNRNPUL2Q1KMD3 747 aaKnown RBP20.85■□□□□ 0.93
APOB-202ENST00000399256 EEA1Q15075 1411 aa20.8■□□□□ 0.92
APOB-202ENST00000399256 GOLGA3Q08378 1498 aa20.78■□□□□ 0.92
APOB-202ENST00000399256 CFTRP13569 1480 aa20.62■□□□□ 0.89
APOB-202ENST00000399256 DNAJC5BQ9UF47 199 aa20.62■□□□□ 0.89
APOB-202ENST00000399256 CLIP1P30622 1438 aa20.61■□□□□ 0.89
APOB-202ENST00000399256 CEP164Q9UPV0 1460 aa20.59■□□□□ 0.89
APOB-202ENST00000399256 RANGAP1P46060 587 aaPredicted RBP20.56■□□□□ 0.88
APOB-202ENST00000399256 APLP2Q06481 763 aa20.56■□□□□ 0.88
APOB-202ENST00000399256 CADPSQ9ULU8 1353 aa20.55■□□□□ 0.88
APOB-202ENST00000399256 PRDM2Q13029 1718 aa20.55■□□□□ 0.88
APOB-202ENST00000399256 VPS8Q8N3P4 1428 aa20.55■□□□□ 0.88
APOB-202ENST00000399256 KIF21BO75037 1637 aa20.53■□□□□ 0.88
APOB-202ENST00000399256 SYNJ1O43426 1573 aa20.5■□□□□ 0.87
APOB-202ENST00000399256 RAPGEF2Q9Y4G8 1499 aa20.44■□□□□ 0.86
APOB-202ENST00000399256 SUPT16HQ9Y5B9 1047 aaKnown RBP20.44■□□□□ 0.86
APOB-202ENST00000399256 NESP48681 1621 aa20.43■□□□□ 0.86
APOB-202ENST00000399256 LAMC3Q9Y6N6 1575 aa20.42■□□□□ 0.86
APOB-202ENST00000399256 DHX57Q6P158 1386 aaKnown RBP20.39■□□□□ 0.85
APOB-202ENST00000399256 CLSPNQ9HAW4 1339 aa20.35■□□□□ 0.85
APOB-202ENST00000399256 TOP2BQ02880 1626 aa20.34■□□□□ 0.85
APOB-202ENST00000399256 FANCD2Q9BXW9 1451 aa20.34■□□□□ 0.85
APOB-202ENST00000399256 BIVM-ERCC5R4GMW8 1640 aa20.34■□□□□ 0.85
APOB-202ENST00000399256 CUX1P39880 1505 aa20.32■□□□□ 0.84
APOB-202ENST00000399256 TSHZ2Q9NRE2 1034 aa20.26■□□□□ 0.83
APOB-202ENST00000399256 KANK4Q5T7N3 995 aaPredicted RBP20.25■□□□□ 0.83
APOB-202ENST00000399256 PDS5BQ9NTI5 1447 aa20.23■□□□□ 0.83
APOB-202ENST00000399256 KIF21AQ7Z4S6 1674 aa20.21■□□□□ 0.83
APOB-202ENST00000399256 ARAP1Q96P48 1450 aa20.2■□□□□ 0.82
APOB-202ENST00000399256 KCNH8Q96L42 1107 aa20.17■□□□□ 0.82
APOB-202ENST00000399256 DNMBPQ6XZF7 1577 aa20.16■□□□□ 0.82
APOB-202ENST00000399256 ITGAEP38570 1179 aa20.14■□□□□ 0.81
APOB-202ENST00000399256 TOPBP1Q92547 1522 aa20.12■□□□□ 0.81
APOB-202ENST00000399256 RRBP1Q9P2E9 1410 aaKnown RBP20.12■□□□□ 0.81
APOB-202ENST00000399256 URB2Q14146 1524 aaKnown RBP20.11■□□□□ 0.81
APOB-202ENST00000399256 ANP32EQ9BTT0 268 aa20.11■□□□□ 0.81
APOB-202ENST00000399256 BCANQ96GW7 911 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms