RNA–Protein interactions for RNA: ENST00000522117.5

SPIDR-217, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 2

Gene SPIDR, Length 2,745 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-217ENST00000522117 NISCHQ9Y2I1 1504 aa22.25■■□□□ 1.15
SPIDR-217ENST00000522117 PELP1Q8IZL8 1130 aaKnown RBP20.92■□□□□ 0.94
SPIDR-217ENST00000522117 HRCP23327 699 aa20.65■□□□□ 0.9
SPIDR-217ENST00000522117 MYT1Q01538 1121 aa20.39■□□□□ 0.85
SPIDR-217ENST00000522117 PPARGC1BQ86YN6 1023 aaKnown RBP20.16■□□□□ 0.82
SPIDR-217ENST00000522117 SCAF1Q9H7N4 1312 aaKnown RBP19.93■□□□□ 0.78
SPIDR-217ENST00000522117 PCGF6Q9BYE7 350 aa19.79■□□□□ 0.76
SPIDR-217ENST00000522117 TTBK1Q5TCY1 1321 aaPredicted RBP19.72■□□□□ 0.75
SPIDR-217ENST00000522117 PRKCSHP14314 528 aaPredicted RBP19.69■□□□□ 0.74
SPIDR-217ENST00000522117 SLC24A1O60721 1099 aa19.57■□□□□ 0.72
SPIDR-217ENST00000522117 MYO15BQ96JP2 1530 aa19.54■□□□□ 0.72
SPIDR-217ENST00000522117 CCDC180Q9P1Z9 1646 aa19.35■□□□□ 0.69
SPIDR-217ENST00000522117 ACIN1Q9UKV3 1341 aaKnown RBP19.2■□□□□ 0.66
SPIDR-217ENST00000522117 DCAF1Q9Y4B6 1507 aa19.17■□□□□ 0.66
SPIDR-217ENST00000522117 APLP2Q06481 763 aa19.14■□□□□ 0.65
SPIDR-217ENST00000522117 NEUROD1Q13562 356 aa19.11■□□□□ 0.65
SPIDR-217ENST00000522117 ERICH6Q7L0X2 663 aa19.1■□□□□ 0.65
SPIDR-217ENST00000522117 ZEB1P37275 1124 aaPredicted RBP19.08■□□□□ 0.65
SPIDR-217ENST00000522117 CHIC1Q5VXU3 224 aa19.04■□□□□ 0.64
SPIDR-217ENST00000522117 GTF3C3Q9Y5Q9 886 aa19.04■□□□□ 0.64
SPIDR-217ENST00000522117 TRIM26Q12899 539 aaPredicted RBP19.01■□□□□ 0.63
SPIDR-217ENST00000522117 SUPT5HO00267 1087 aaKnown RBP18.99■□□□□ 0.63
SPIDR-217ENST00000522117 BCL11AQ9H165 835 aa18.94■□□□□ 0.62
SPIDR-217ENST00000522117 FAM9AQ8IZU1 332 aaPredicted RBP18.81■□□□□ 0.6
SPIDR-217ENST00000522117 CENPBP07199 599 aaPredicted RBP18.8■□□□□ 0.6
SPIDR-217ENST00000522117 SHROOM4Q9ULL8 1493 aa18.8■□□□□ 0.6
SPIDR-217ENST00000522117 DCAF8L2P0C7V8 631 aa18.8■□□□□ 0.6
SPIDR-217ENST00000522117 ZCCHC6Q5VYS8 1495 aaKnown RBP18.79■□□□□ 0.6
SPIDR-217ENST00000522117 LOC105371045A0A1W2PR82 267 aa18.64■□□□□ 0.57
SPIDR-217ENST00000522117 DAXXQ9UER7 740 aaPredicted RBP18.53■□□□□ 0.56
SPIDR-217ENST00000522117 ANP32EQ9BTT0 268 aa18.49■□□□□ 0.55
SPIDR-217ENST00000522117 DIEXFQ68CQ4 756 aaKnown RBP18.44■□□□□ 0.54
SPIDR-217ENST00000522117 ABCC9O60706 1549 aa18.43■□□□□ 0.54
SPIDR-217ENST00000522117 CSRNP3Q8WYN3 585 aa18.32■□□□□ 0.52
SPIDR-217ENST00000522117 TRIM41Q8WV44 630 aa18.17■□□□□ 0.5
SPIDR-217ENST00000522117 YTHDC1Q96MU7 727 aaKnown RBP18.16■□□□□ 0.5
SPIDR-217ENST00000522117 TSHZ2Q9NRE2 1034 aa18.13■□□□□ 0.49
SPIDR-217ENST00000522117 EIF5BO60841 1220 aaKnown RBP18.13■□□□□ 0.49
SPIDR-217ENST00000522117 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.1■□□□□ 0.49
SPIDR-217ENST00000522117 CCER1Q8TC90 406 aaPredicted RBP18.05■□□□□ 0.48
SPIDR-217ENST00000522117 SUPT16HQ9Y5B9 1047 aaKnown RBP18■□□□□ 0.47
SPIDR-217ENST00000522117 ZNF316A6NFI3 1004 aaPredicted RBP17.94■□□□□ 0.46
SPIDR-217ENST00000522117 MIER1Q8N108 512 aa17.94■□□□□ 0.46
SPIDR-217ENST00000522117 CLSPNQ9HAW4 1339 aa17.92■□□□□ 0.46
SPIDR-217ENST00000522117 SCRIBQ14160 1630 aa17.9■□□□□ 0.46
SPIDR-217ENST00000522117 PLEKHG5O94827 1062 aa17.87■□□□□ 0.45
SPIDR-217ENST00000522117 NACADO15069 1562 aa17.82■□□□□ 0.44
SPIDR-217ENST00000522117 ANO8Q9HCE9 1232 aaPredicted RBP17.69■□□□□ 0.42
SPIDR-217ENST00000522117 RB1CC1Q8TDY2 1594 aa17.63■□□□□ 0.41
SPIDR-217ENST00000522117 PABPN1Q86U42 306 aaKnown RBP eCLIP17.59■□□□□ 0.41
SPIDR-217ENST00000522117 RBM19Q9Y4C8 960 aaKnown RBP17.59■□□□□ 0.41
SPIDR-217ENST00000522117 MSH5O43196 834 aa17.57■□□□□ 0.4
SPIDR-217ENST00000522117 UBE2Q2Q8WVN8 375 aa17.49■□□□□ 0.39
SPIDR-217ENST00000522117 CECR2Q9BXF3 1484 aa17.49■□□□□ 0.39
SPIDR-217ENST00000522117 EHMT2Q96KQ7 1210 aa17.46■□□□□ 0.39
SPIDR-217ENST00000522117 UNC13AQ9UPW8 1703 aa17.45■□□□□ 0.38
SPIDR-217ENST00000522117 PODXL2Q9NZ53 605 aa17.44■□□□□ 0.38
SPIDR-217ENST00000522117 SALL2Q9Y467 1007 aaPredicted RBP17.43■□□□□ 0.38
SPIDR-217ENST00000522117 BCANQ96GW7 911 aa17.42■□□□□ 0.38
SPIDR-217ENST00000522117 DEKP35659 375 aaKnown RBP17.41■□□□□ 0.38
SPIDR-217ENST00000522117 MYT1LQ9UL68 1186 aa17.39■□□□□ 0.37
SPIDR-217ENST00000522117 RSF1Q96T23 1441 aaPredicted RBP17.37■□□□□ 0.37
SPIDR-217ENST00000522117 FANCIQ9NVI1 1328 aa17.33■□□□□ 0.36
SPIDR-217ENST00000522117 ERICH6BQ5W0A0 696 aa17.31■□□□□ 0.36
SPIDR-217ENST00000522117 FKBP8Q14318 412 aa17.3■□□□□ 0.36
SPIDR-217ENST00000522117 BICRAQ9NZM4 1560 aa17.3■□□□□ 0.36
SPIDR-217ENST00000522117 CCDC136Q96JN2 1154 aa17.3■□□□□ 0.36
SPIDR-217ENST00000522117 MROH2BQ7Z745 1585 aa17.29■□□□□ 0.36
SPIDR-217ENST00000522117 WRNQ14191 1432 aaPredicted RBP eCLIP17.23■□□□□ 0.35
SPIDR-217ENST00000522117 NCBP3Q53F19 620 aaKnown RBP17.2■□□□□ 0.34
SPIDR-217ENST00000522117 PKNOX2Q96KN3 472 aa17.19■□□□□ 0.34
SPIDR-217ENST00000522117 ITGAEP38570 1179 aa17.18■□□□□ 0.34
SPIDR-217ENST00000522117 WIZO95785 1651 aa17.15■□□□□ 0.34
SPIDR-217ENST00000522117 BAZ1AQ9NRL2 1556 aaPredicted RBP17.15■□□□□ 0.34
SPIDR-217ENST00000522117 KCNH8Q96L42 1107 aa17.12■□□□□ 0.33
SPIDR-217ENST00000522117 KLHL34Q8N239 644 aa17.11■□□□□ 0.33
SPIDR-217ENST00000522117 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.08■□□□□ 0.33
SPIDR-217ENST00000522117 SMARCA4P51532 1647 aa17.07■□□□□ 0.32
SPIDR-217ENST00000522117 NEFLP07196 543 aa17.05■□□□□ 0.32
SPIDR-217ENST00000522117 IL27Q8NEV9 243 aa17.05■□□□□ 0.32
SPIDR-217ENST00000522117 AEBP2Q6ZN18 517 aaPredicted RBP16.98■□□□□ 0.31
SPIDR-217ENST00000522117 HNRNPUL2Q1KMD3 747 aaKnown RBP16.96■□□□□ 0.3
SPIDR-217ENST00000522117 RTN4Q9NQC3 1192 aaKnown RBP16.96■□□□□ 0.3
SPIDR-217ENST00000522117 CDK11AQ9UQ88 783 aaPredicted RBP16.95■□□□□ 0.3
SPIDR-217ENST00000522117 TOP2AP11388 1531 aaKnown RBP16.94■□□□□ 0.3
SPIDR-217ENST00000522117 NBR1Q14596 966 aa16.94■□□□□ 0.3
SPIDR-217ENST00000522117 CEP162Q5TB80 1403 aa16.93■□□□□ 0.3
SPIDR-217ENST00000522117 EIF4G1Q04637 1599 aaKnown RBP16.92■□□□□ 0.3
SPIDR-217ENST00000522117 PLPPR3Q6T4P5 718 aa16.9■□□□□ 0.3
SPIDR-217ENST00000522117 RANGAP1P46060 587 aaPredicted RBP16.89■□□□□ 0.29
SPIDR-217ENST00000522117 NOP58Q9Y2X3 529 aaKnown RBP16.88■□□□□ 0.29
SPIDR-217ENST00000522117 PEG3Q9GZU2 1588 aa16.87■□□□□ 0.29
SPIDR-217ENST00000522117 PAK3O75914 559 aaPredicted RBP16.86■□□□□ 0.29
SPIDR-217ENST00000522117 ARXQ96QS3 562 aa16.85■□□□□ 0.29
SPIDR-217ENST00000522117 TIMELESSQ9UNS1 1208 aa16.81■□□□□ 0.28
SPIDR-217ENST00000522117 SMARCA2P51531 1590 aa16.81■□□□□ 0.28
SPIDR-217ENST00000522117 PDIA4P13667 645 aaKnown RBP16.81■□□□□ 0.28
SPIDR-217ENST00000522117 DHX57Q6P158 1386 aaKnown RBP16.78■□□□□ 0.28
SPIDR-217ENST00000522117 CCDC88BA6NC98 1476 aa16.78■□□□□ 0.28
SPIDR-217ENST00000522117 ATAD2BQ9ULI0 1458 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms