RNA–Protein interactions for RNA: ENST00000297423.8

SPIDR-201, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SPIDR, Length 3,988 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-201ENST00000297423 NISCHQ9Y2I1 1504 aa29.86■■■□□ 2.37
SPIDR-201ENST00000297423 CCDC180Q9P1Z9 1646 aa25.71■■□□□ 1.71
SPIDR-201ENST00000297423 DCAF8L2P0C7V8 631 aa25.46■■□□□ 1.67
SPIDR-201ENST00000297423 SHROOM4Q9ULL8 1493 aa25.06■■□□□ 1.6
SPIDR-201ENST00000297423 ZCCHC6Q5VYS8 1495 aaKnown RBP25.05■■□□□ 1.6
SPIDR-201ENST00000297423 SUPT5HO00267 1087 aaKnown RBP25.03■■□□□ 1.6
SPIDR-201ENST00000297423 PCGF6Q9BYE7 350 aa24.77■■□□□ 1.56
SPIDR-201ENST00000297423 PPARGC1BQ86YN6 1023 aaKnown RBP24.67■■□□□ 1.54
SPIDR-201ENST00000297423 ABCC9O60706 1549 aa24.66■■□□□ 1.54
SPIDR-201ENST00000297423 HRCP23327 699 aa24.62■■□□□ 1.53
SPIDR-201ENST00000297423 DCAF1Q9Y4B6 1507 aa24.48■■□□□ 1.51
SPIDR-201ENST00000297423 MYO15BQ96JP2 1530 aa24.09■■□□□ 1.45
SPIDR-201ENST00000297423 NACADO15069 1562 aa24.08■■□□□ 1.45
SPIDR-201ENST00000297423 SCRIBQ14160 1630 aa24.02■■□□□ 1.44
SPIDR-201ENST00000297423 RB1CC1Q8TDY2 1594 aa23.9■■□□□ 1.42
SPIDR-201ENST00000297423 PELP1Q8IZL8 1130 aaKnown RBP23.84■■□□□ 1.41
SPIDR-201ENST00000297423 EHMT2Q96KQ7 1210 aa23.82■■□□□ 1.4
SPIDR-201ENST00000297423 CHIC1Q5VXU3 224 aa23.81■■□□□ 1.4
SPIDR-201ENST00000297423 LOC105371045A0A1W2PR82 267 aa23.78■■□□□ 1.4
SPIDR-201ENST00000297423 PABPN1Q86U42 306 aaKnown RBP eCLIP23.48■■□□□ 1.35
SPIDR-201ENST00000297423 SCAF1Q9H7N4 1312 aaKnown RBP23.45■■□□□ 1.34
SPIDR-201ENST00000297423 TRIM26Q12899 539 aaPredicted RBP23.42■■□□□ 1.34
SPIDR-201ENST00000297423 FAM9AQ8IZU1 332 aaPredicted RBP23.41■■□□□ 1.34
SPIDR-201ENST00000297423 RSF1Q96T23 1441 aaPredicted RBP23.33■■□□□ 1.33
SPIDR-201ENST00000297423 CECR2Q9BXF3 1484 aa23.28■■□□□ 1.32
SPIDR-201ENST00000297423 ZEB1P37275 1124 aaPredicted RBP23.2■■□□□ 1.31
SPIDR-201ENST00000297423 TTBK1Q5TCY1 1321 aaPredicted RBP23.15■■□□□ 1.3
SPIDR-201ENST00000297423 MROH2BQ7Z745 1585 aa23.11■■□□□ 1.29
SPIDR-201ENST00000297423 UNC13AQ9UPW8 1703 aa23.09■■□□□ 1.29
SPIDR-201ENST00000297423 BAZ1AQ9NRL2 1556 aaPredicted RBP23.08■■□□□ 1.29
SPIDR-201ENST00000297423 YTHDC1Q96MU7 727 aaKnown RBP23.04■■□□□ 1.28
SPIDR-201ENST00000297423 GTF3C3Q9Y5Q9 886 aa23.03■■□□□ 1.28
SPIDR-201ENST00000297423 CCER1Q8TC90 406 aaPredicted RBP22.98■■□□□ 1.27
SPIDR-201ENST00000297423 BICRAQ9NZM4 1560 aa22.96■■□□□ 1.27
SPIDR-201ENST00000297423 CENPBP07199 599 aaPredicted RBP22.96■■□□□ 1.27
SPIDR-201ENST00000297423 NEUROD1Q13562 356 aa22.94■■□□□ 1.26
SPIDR-201ENST00000297423 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.92■■□□□ 1.26
SPIDR-201ENST00000297423 WIZO95785 1651 aa22.9■■□□□ 1.26
SPIDR-201ENST00000297423 ACIN1Q9UKV3 1341 aaKnown RBP22.89■■□□□ 1.25
SPIDR-201ENST00000297423 MYT1Q01538 1121 aa22.87■■□□□ 1.25
SPIDR-201ENST00000297423 SMARCA4P51532 1647 aa22.86■■□□□ 1.25
SPIDR-201ENST00000297423 TRIM41Q8WV44 630 aa22.82■■□□□ 1.24
SPIDR-201ENST00000297423 DIEXFQ68CQ4 756 aaKnown RBP22.73■■□□□ 1.23
SPIDR-201ENST00000297423 TOP2AP11388 1531 aaKnown RBP22.65■■□□□ 1.22
SPIDR-201ENST00000297423 BAZ1BQ9UIG0 1483 aaKnown RBP22.56■■□□□ 1.2
SPIDR-201ENST00000297423 ATAD2BQ9ULI0 1458 aa22.54■■□□□ 1.2
SPIDR-201ENST00000297423 SMARCA2P51531 1590 aa22.53■■□□□ 1.2
SPIDR-201ENST00000297423 CCDC88BA6NC98 1476 aa22.53■■□□□ 1.2
SPIDR-201ENST00000297423 EIF4G1Q04637 1599 aaKnown RBP22.42■■□□□ 1.18
SPIDR-201ENST00000297423 PEG3Q9GZU2 1588 aa22.39■■□□□ 1.17
SPIDR-201ENST00000297423 NCAPD3P42695 1498 aa22.26■■□□□ 1.15
SPIDR-201ENST00000297423 ABCC8Q09428 1581 aa22.16■■□□□ 1.14
SPIDR-201ENST00000297423 HMGXB3Q12766 1538 aa22.15■■□□□ 1.14
SPIDR-201ENST00000297423 HNRNPUL2Q1KMD3 747 aaKnown RBP22.1■■□□□ 1.13
SPIDR-201ENST00000297423 WRNQ14191 1432 aaPredicted RBP eCLIP22.09■■□□□ 1.13
SPIDR-201ENST00000297423 ZNF316A6NFI3 1004 aaPredicted RBP22.08■■□□□ 1.13
SPIDR-201ENST00000297423 MIER1Q8N108 512 aa22.07■■□□□ 1.12
SPIDR-201ENST00000297423 RANGAP1P46060 587 aaPredicted RBP22.06■■□□□ 1.12
SPIDR-201ENST00000297423 CC2D2AQ9P2K1 1620 aa22.06■■□□□ 1.12
SPIDR-201ENST00000297423 BCANQ96GW7 911 aa21.97■■□□□ 1.11
SPIDR-201ENST00000297423 UBTFP17480 764 aaKnown RBP21.95■■□□□ 1.1
SPIDR-201ENST00000297423 CSRNP3Q8WYN3 585 aa21.91■■□□□ 1.1
SPIDR-201ENST00000297423 CADPSQ9ULU8 1353 aa21.87■■□□□ 1.09
SPIDR-201ENST00000297423 SOGA1O94964 1423 aa21.86■■□□□ 1.09
SPIDR-201ENST00000297423 CFTRP13569 1480 aa21.84■■□□□ 1.09
SPIDR-201ENST00000297423 EEA1Q15075 1411 aa21.83■■□□□ 1.08
SPIDR-201ENST00000297423 SYNJ1O43426 1573 aa21.76■■□□□ 1.07
SPIDR-201ENST00000297423 APLP2Q06481 763 aa21.73■■□□□ 1.07
SPIDR-201ENST00000297423 BCL11AQ9H165 835 aa21.72■■□□□ 1.07
SPIDR-201ENST00000297423 RUSC2Q8N2Y8 1516 aa21.7■■□□□ 1.06
SPIDR-201ENST00000297423 DNAJC5BQ9UF47 199 aa21.63■■□□□ 1.05
SPIDR-201ENST00000297423 FANCD2Q9BXW9 1451 aa21.62■■□□□ 1.05
SPIDR-201ENST00000297423 TOP2BQ02880 1626 aa21.62■■□□□ 1.05
SPIDR-201ENST00000297423 ANP32EQ9BTT0 268 aa21.62■■□□□ 1.05
SPIDR-201ENST00000297423 SUPT16HQ9Y5B9 1047 aaKnown RBP21.6■■□□□ 1.05
SPIDR-201ENST00000297423 GOLGA3Q08378 1498 aa21.59■■□□□ 1.05
SPIDR-201ENST00000297423 NESP48681 1621 aa21.59■■□□□ 1.05
SPIDR-201ENST00000297423 CUX1P39880 1505 aa21.58■■□□□ 1.04
SPIDR-201ENST00000297423 ERICH6Q7L0X2 663 aa21.57■■□□□ 1.04
SPIDR-201ENST00000297423 KIF27Q86VH2 1401 aa21.56■■□□□ 1.04
SPIDR-201ENST00000297423 CEP164Q9UPV0 1460 aa21.55■■□□□ 1.04
SPIDR-201ENST00000297423 TNIKQ9UKE5 1360 aa21.54■■□□□ 1.04
SPIDR-201ENST00000297423 PDS5BQ9NTI5 1447 aa21.53■■□□□ 1.04
SPIDR-201ENST00000297423 ITGAEP38570 1179 aa21.51■■□□□ 1.03
SPIDR-201ENST00000297423 BIVM-ERCC5R4GMW8 1640 aa21.49■■□□□ 1.03
SPIDR-201ENST00000297423 NEFLP07196 543 aa21.49■■□□□ 1.03
SPIDR-201ENST00000297423 CEP162Q5TB80 1403 aa21.49■■□□□ 1.03
SPIDR-201ENST00000297423 TSHZ2Q9NRE2 1034 aa21.48■■□□□ 1.03
SPIDR-201ENST00000297423 CUX2O14529 1486 aa21.46■■□□□ 1.03
SPIDR-201ENST00000297423 FKBP8Q14318 412 aa21.46■■□□□ 1.03
SPIDR-201ENST00000297423 LAMC3Q9Y6N6 1575 aa21.45■■□□□ 1.02
SPIDR-201ENST00000297423 FGD5Q6ZNL6 1462 aa21.43■■□□□ 1.02
SPIDR-201ENST00000297423 PRDM2Q13029 1718 aa21.43■■□□□ 1.02
SPIDR-201ENST00000297423 RAPGEF2Q9Y4G8 1499 aa21.37■■□□□ 1.01
SPIDR-201ENST00000297423 CLIP1P30622 1438 aa21.34■■□□□ 1.01
SPIDR-201ENST00000297423 KIF21BO75037 1637 aa21.33■■□□□ 1.01
SPIDR-201ENST00000297423 TOPBP1Q92547 1522 aa21.33■■□□□ 1
SPIDR-201ENST00000297423 DNMBPQ6XZF7 1577 aa21.32■■□□□ 1
SPIDR-201ENST00000297423 RAD54L2Q9Y4B4 1467 aa21.29■■□□□ 1
SPIDR-201ENST00000297423 CARMIL1Q5VZK9 1371 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms