RNA–Protein interactions for RNA: ENST00000394805.7

MATR3-201, Transcript of matrin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MATR3, Length 4,843 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MATR3-201ENST00000394805 NISCHQ9Y2I1 1504 aa16.96■□□□□ 0.31
MATR3-201ENST00000394805 SHROOM4Q9ULL8 1493 aa15.31■□□□□ 0.04
MATR3-201ENST00000394805 SUPT5HO00267 1087 aaKnown RBP15.16■□□□□ 0.02
MATR3-201ENST00000394805 DCAF8L2P0C7V8 631 aa14.9□□□□□ -0.02
MATR3-201ENST00000394805 PCGF6Q9BYE7 350 aa14.58□□□□□ -0.08
MATR3-201ENST00000394805 CHIC1Q5VXU3 224 aa14.52□□□□□ -0.09
MATR3-201ENST00000394805 HRCP23327 699 aa14.45□□□□□ -0.1
MATR3-201ENST00000394805 MYO15BQ96JP2 1530 aa14.43□□□□□ -0.1
MATR3-201ENST00000394805 PPARGC1BQ86YN6 1023 aaKnown RBP14.42□□□□□ -0.1
MATR3-201ENST00000394805 LOC105371045A0A1W2PR82 267 aa14.35□□□□□ -0.11
MATR3-201ENST00000394805 ZCCHC6Q5VYS8 1495 aaKnown RBP14.31□□□□□ -0.12
MATR3-201ENST00000394805 EHMT2Q96KQ7 1210 aa14.23□□□□□ -0.13
MATR3-201ENST00000394805 FAM9AQ8IZU1 332 aaPredicted RBP14.11□□□□□ -0.15
MATR3-201ENST00000394805 CCDC180Q9P1Z9 1646 aa14.02□□□□□ -0.17
MATR3-201ENST00000394805 TRIM26Q12899 539 aaPredicted RBP13.98□□□□□ -0.17
MATR3-201ENST00000394805 TRIM41Q8WV44 630 aa13.93□□□□□ -0.18
MATR3-201ENST00000394805 DCAF1Q9Y4B6 1507 aa13.87□□□□□ -0.19
MATR3-201ENST00000394805 TTBK1Q5TCY1 1321 aaPredicted RBP13.78□□□□□ -0.2
MATR3-201ENST00000394805 ZEB1P37275 1124 aaPredicted RBP13.69□□□□□ -0.22
MATR3-201ENST00000394805 SCRIBQ14160 1630 aa13.66□□□□□ -0.22
MATR3-201ENST00000394805 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.63□□□□□ -0.23
MATR3-201ENST00000394805 RSF1Q96T23 1441 aaPredicted RBP13.63□□□□□ -0.23
MATR3-201ENST00000394805 CCER1Q8TC90 406 aaPredicted RBP13.6□□□□□ -0.23
MATR3-201ENST00000394805 SCAF1Q9H7N4 1312 aaKnown RBP13.56□□□□□ -0.24
MATR3-201ENST00000394805 RB1CC1Q8TDY2 1594 aa13.52□□□□□ -0.24
MATR3-201ENST00000394805 ABCC9O60706 1549 aa13.52□□□□□ -0.25
MATR3-201ENST00000394805 CECR2Q9BXF3 1484 aa13.43□□□□□ -0.26
MATR3-201ENST00000394805 NEUROD1Q13562 356 aa13.36□□□□□ -0.27
MATR3-201ENST00000394805 DIEXFQ68CQ4 756 aaKnown RBP13.36□□□□□ -0.27
MATR3-201ENST00000394805 UBTFP17480 764 aaKnown RBP13.35□□□□□ -0.27
MATR3-201ENST00000394805 YTHDC1Q96MU7 727 aaKnown RBP13.35□□□□□ -0.27
MATR3-201ENST00000394805 PELP1Q8IZL8 1130 aaKnown RBP13.34□□□□□ -0.27
MATR3-201ENST00000394805 RANGAP1P46060 587 aaPredicted RBP13.34□□□□□ -0.27
MATR3-201ENST00000394805 MROH2BQ7Z745 1585 aa13.32□□□□□ -0.28
MATR3-201ENST00000394805 GTF3C3Q9Y5Q9 886 aa13.31□□□□□ -0.28
MATR3-201ENST00000394805 ACIN1Q9UKV3 1341 aaKnown RBP13.31□□□□□ -0.28
MATR3-201ENST00000394805 CENPBP07199 599 aaPredicted RBP13.26□□□□□ -0.29
MATR3-201ENST00000394805 WIZO95785 1651 aa13.25□□□□□ -0.29
MATR3-201ENST00000394805 HNRNPUL2Q1KMD3 747 aaKnown RBP13.25□□□□□ -0.29
MATR3-201ENST00000394805 ABCC8Q09428 1581 aa13.17□□□□□ -0.3
MATR3-201ENST00000394805 CCDC88BA6NC98 1476 aa13.14□□□□□ -0.31
MATR3-201ENST00000394805 PABPN1Q86U42 306 aaKnown RBP eCLIP13.14□□□□□ -0.312e-7■■□□□ 12.6
MATR3-201ENST00000394805 SOGA1O94964 1423 aa13.13□□□□□ -0.31
MATR3-201ENST00000394805 CSRNP3Q8WYN3 585 aa13.13□□□□□ -0.31
MATR3-201ENST00000394805 CEP162Q5TB80 1403 aa13.12□□□□□ -0.31
MATR3-201ENST00000394805 ZNF316A6NFI3 1004 aaPredicted RBP13.11□□□□□ -0.31
MATR3-201ENST00000394805 APLP2Q06481 763 aa13.09□□□□□ -0.31
MATR3-201ENST00000394805 NACADO15069 1562 aa13.07□□□□□ -0.32
MATR3-201ENST00000394805 RUSC2Q8N2Y8 1516 aa13.06□□□□□ -0.32
MATR3-201ENST00000394805 MIER1Q8N108 512 aa13.05□□□□□ -0.32
MATR3-201ENST00000394805 BAZ1AQ9NRL2 1556 aaPredicted RBP12.99□□□□□ -0.33
MATR3-201ENST00000394805 TNIKQ9UKE5 1360 aa12.98□□□□□ -0.33
MATR3-201ENST00000394805 ITGAEP38570 1179 aa12.93□□□□□ -0.34
MATR3-201ENST00000394805 WRNQ14191 1432 aaPredicted RBP eCLIP12.92□□□□□ -0.346e-9■■■■■ 30.6
MATR3-201ENST00000394805 TOP2AP11388 1531 aaKnown RBP12.89□□□□□ -0.35
MATR3-201ENST00000394805 GOLGA3Q08378 1498 aa12.88□□□□□ -0.35
MATR3-201ENST00000394805 SMARCA2P51531 1590 aa12.87□□□□□ -0.35
MATR3-201ENST00000394805 CLIP1P30622 1438 aa12.86□□□□□ -0.35
MATR3-201ENST00000394805 EIF4G1Q04637 1599 aaKnown RBP12.84□□□□□ -0.35
MATR3-201ENST00000394805 SMARCA4P51532 1647 aa12.84□□□□□ -0.35
MATR3-201ENST00000394805 EEA1Q15075 1411 aa12.81□□□□□ -0.36
MATR3-201ENST00000394805 CEP164Q9UPV0 1460 aa12.75□□□□□ -0.37
MATR3-201ENST00000394805 ATP1B4Q9UN42 357 aaPredicted RBP12.74□□□□□ -0.37
MATR3-201ENST00000394805 RAPGEF2Q9Y4G8 1499 aa12.74□□□□□ -0.37
MATR3-201ENST00000394805 KANK4Q5T7N3 995 aaPredicted RBP12.74□□□□□ -0.37
MATR3-201ENST00000394805 VPS8Q8N3P4 1428 aa12.72□□□□□ -0.37
MATR3-201ENST00000394805 BCANQ96GW7 911 aa12.71□□□□□ -0.37
MATR3-201ENST00000394805 SYNJ1O43426 1573 aa12.69□□□□□ -0.38
MATR3-201ENST00000394805 MYT1Q01538 1121 aa12.66□□□□□ -0.38
MATR3-201ENST00000394805 KCNH8Q96L42 1107 aa12.66□□□□□ -0.38
MATR3-201ENST00000394805 HIRIP3Q9BW71 556 aaPredicted RBP12.64□□□□□ -0.39
MATR3-201ENST00000394805 SUPT16HQ9Y5B9 1047 aaKnown RBP12.64□□□□□ -0.39
MATR3-201ENST00000394805 P3H3Q8IVL6 736 aa12.62□□□□□ -0.39
MATR3-201ENST00000394805 DHX57Q6P158 1386 aaKnown RBP12.62□□□□□ -0.39
MATR3-201ENST00000394805 BAZ1BQ9UIG0 1483 aaKnown RBP12.62□□□□□ -0.39
MATR3-201ENST00000394805 FAM50AQ14320 339 aaKnown RBP12.62□□□□□ -0.39
MATR3-201ENST00000394805 UNC13AQ9UPW8 1703 aa12.6□□□□□ -0.39
MATR3-201ENST00000394805 KIF21BO75037 1637 aa12.6□□□□□ -0.39
MATR3-201ENST00000394805 DDX10Q13206 875 aaKnown RBP12.59□□□□□ -0.39
MATR3-201ENST00000394805 SIN3AQ96ST3 1273 aa12.56□□□□□ -0.4
MATR3-201ENST00000394805 ATAD2BQ9ULI0 1458 aa12.56□□□□□ -0.4
MATR3-201ENST00000394805 FKBP8Q14318 412 aa12.53□□□□□ -0.4
MATR3-201ENST00000394805 TRIM52Q96A61 297 aa12.51□□□□□ -0.41
MATR3-201ENST00000394805 BICRAQ9NZM4 1560 aa12.5□□□□□ -0.41
MATR3-201ENST00000394805 CCNB3Q8WWL7 1395 aa12.5□□□□□ -0.41
MATR3-201ENST00000394805 ARAP1Q96P48 1450 aa12.49□□□□□ -0.41
MATR3-201ENST00000394805 CLSPNQ9HAW4 1339 aa12.49□□□□□ -0.41
MATR3-201ENST00000394805 TSHZ2Q9NRE2 1034 aa12.48□□□□□ -0.41
MATR3-201ENST00000394805 RAB3GAP2Q9H2M9 1393 aa12.46□□□□□ -0.41
MATR3-201ENST00000394805 NEFLP07196 543 aa12.45□□□□□ -0.42
MATR3-201ENST00000394805 KIF27Q86VH2 1401 aa12.44□□□□□ -0.42
MATR3-201ENST00000394805 PRXQ9BXM0 1461 aa12.4□□□□□ -0.42
MATR3-201ENST00000394805 TOP2BQ02880 1626 aa12.39□□□□□ -0.43
MATR3-201ENST00000394805 ANP32CO43423 234 aa12.39□□□□□ -0.43
MATR3-201ENST00000394805 IRX6P78412 446 aaPredicted RBP12.38□□□□□ -0.43
MATR3-201ENST00000394805 CNGB1Q14028 1251 aaPredicted RBP12.38□□□□□ -0.43
MATR3-201ENST00000394805 ARHGAP35Q9NRY4 1499 aa12.36□□□□□ -0.43
MATR3-201ENST00000394805 RRBP1Q9P2E9 1410 aaKnown RBP12.36□□□□□ -0.43
MATR3-201ENST00000394805 PEG3Q9GZU2 1588 aa12.36□□□□□ -0.43
MATR3-201ENST00000394805 CUX2O14529 1486 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms