RNA–Protein interactions for RNA: ENST00000620916.2

MATR3-228, Transcript of matrin 3, humanhuman

TSL 5 BASIC

Gene MATR3, Length 3,134 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MATR3-228ENST00000620916 CHIC1Q5VXU3 224 aa11.55□□□□□ -0.56
MATR3-228ENST00000620916 AEBP2Q6ZN18 517 aaPredicted RBP11.53□□□□□ -0.56
MATR3-228ENST00000620916 PHF23Q9BUL5 403 aaPredicted RBP10.43□□□□□ -0.74
MATR3-228ENST00000620916 NISCHQ9Y2I1 1504 aa10.21□□□□□ -0.77
MATR3-228ENST00000620916 PLPPR3Q6T4P5 718 aa9.57□□□□□ -0.88
MATR3-228ENST00000620916 PELP1Q8IZL8 1130 aaKnown RBP9.45□□□□□ -0.9
MATR3-228ENST00000620916 ABCC9O60706 1549 aa9.44□□□□□ -0.9
MATR3-228ENST00000620916 MYT1Q01538 1121 aa9.42□□□□□ -0.9
MATR3-228ENST00000620916 CCDC180Q9P1Z9 1646 aa9.42□□□□□ -0.9
MATR3-228ENST00000620916 EHMT2Q96KQ7 1210 aa9.41□□□□□ -0.9
MATR3-228ENST00000620916 SENP3Q9H4L4 574 aaPredicted RBP9.38□□□□□ -0.91
MATR3-228ENST00000620916 ADRA2BP18089 450 aa9.33□□□□□ -0.92
MATR3-228ENST00000620916 KCNA4P22459 653 aa9.22□□□□□ -0.93
MATR3-228ENST00000620916 TTBK1Q5TCY1 1321 aaPredicted RBP9.19□□□□□ -0.94
MATR3-228ENST00000620916 PPP6R1Q9UPN7 881 aa9.12□□□□□ -0.95
MATR3-228ENST00000620916 RB1CC1Q8TDY2 1594 aa9.06□□□□□ -0.96
MATR3-228ENST00000620916 DNAJC5BQ9UF47 199 aa9.06□□□□□ -0.96
MATR3-228ENST00000620916 MYO15BQ96JP2 1530 aa9.01□□□□□ -0.97
MATR3-228ENST00000620916 DCAF1Q9Y4B6 1507 aa8.97□□□□□ -0.97
MATR3-228ENST00000620916 NACADO15069 1562 aa8.97□□□□□ -0.97
MATR3-228ENST00000620916 CSRNP3Q8WYN3 585 aa8.88□□□□□ -0.99
MATR3-228ENST00000620916 FOXD1Q16676 465 aa8.86□□□□□ -0.99
MATR3-228ENST00000620916 SHROOM4Q9ULL8 1493 aa8.85□□□□□ -0.99
MATR3-228ENST00000620916 SLC24A1O60721 1099 aa8.78□□□□□ -1
MATR3-228ENST00000620916 SLC4A1APQ9BWU0 796 aaKnown RBP8.73□□□□□ -1.01
MATR3-228ENST00000620916 UNC13AQ9UPW8 1703 aa8.72□□□□□ -1.01
MATR3-228ENST00000620916 DNAJC5Q9H3Z4 198 aa8.72□□□□□ -1.01
MATR3-228ENST00000620916 BICRAQ9NZM4 1560 aa8.72□□□□□ -1.01
MATR3-228ENST00000620916 APLP2Q06481 763 aa8.68□□□□□ -1.02
MATR3-228ENST00000620916 PRKCSHP14314 528 aaPredicted RBP8.67□□□□□ -1.02
MATR3-228ENST00000620916 ERICH6Q7L0X2 663 aa8.66□□□□□ -1.02
MATR3-228ENST00000620916 PABPN1Q86U42 306 aaKnown RBP eCLIP8.65□□□□□ -1.022e-7■■□□□ 12.6
MATR3-228ENST00000620916 CECR2Q9BXF3 1484 aa8.63□□□□□ -1.03
MATR3-228ENST00000620916 PPP4R3CPQ6ZMV5 832 aa8.6□□□□□ -1.03
MATR3-228ENST00000620916 CC2D2AQ9P2K1 1620 aa8.6□□□□□ -1.03
MATR3-228ENST00000620916 ZBTB22O15209 634 aa8.57□□□□□ -1.04
MATR3-228ENST00000620916 EIF4G1Q04637 1599 aaKnown RBP8.54□□□□□ -1.04
MATR3-228ENST00000620916 CUX2O14529 1486 aa8.5□□□□□ -1.05
MATR3-228ENST00000620916 ZCCHC6Q5VYS8 1495 aaKnown RBP8.49□□□□□ -1.05
MATR3-228ENST00000620916 NPM3O75607 178 aaKnown RBP8.48□□□□□ -1.05
MATR3-228ENST00000620916 PIAS4Q8N2W9 510 aaPredicted RBP8.48□□□□□ -1.05
MATR3-228ENST00000620916 DCAF8L2P0C7V8 631 aa8.46□□□□□ -1.05
MATR3-228ENST00000620916 DAXXQ9UER7 740 aaPredicted RBP8.44□□□□□ -1.06
MATR3-228ENST00000620916 RTN4Q9NQC3 1192 aaKnown RBP8.39□□□□□ -1.07
MATR3-228ENST00000620916 HRCP23327 699 aa8.38□□□□□ -1.07
MATR3-228ENST00000620916 BCL11AQ9H165 835 aa8.34□□□□□ -1.08
MATR3-228ENST00000620916 SCRIBQ14160 1630 aa8.33□□□□□ -1.08
MATR3-228ENST00000620916 NCBP3Q53F19 620 aaKnown RBP8.32□□□□□ -1.08
MATR3-228ENST00000620916 NCAPD3P42695 1498 aa8.25□□□□□ -1.09
MATR3-228ENST00000620916 ERCC6Q03468 1493 aa8.24□□□□□ -1.09
MATR3-228ENST00000620916 SCAF1Q9H7N4 1312 aaKnown RBP8.23□□□□□ -1.09
MATR3-228ENST00000620916 POTEDQ86YR6 584 aa8.18□□□□□ -1.1
MATR3-228ENST00000620916 FAM9AQ8IZU1 332 aaPredicted RBP8.18□□□□□ -1.1
MATR3-228ENST00000620916 HMGXB3Q12766 1538 aa8.18□□□□□ -1.1
MATR3-228ENST00000620916 MAPK8IP2Q13387 824 aaPredicted RBP8.17□□□□□ -1.1
MATR3-228ENST00000620916 SMARCA2P51531 1590 aa8.15□□□□□ -1.11
MATR3-228ENST00000620916 PEG3Q9GZU2 1588 aa8.14□□□□□ -1.11
MATR3-228ENST00000620916 THOC2Q8NI27 1593 aaKnown RBP8.13□□□□□ -1.11
MATR3-228ENST00000620916 LAMC3Q9Y6N6 1575 aa8.12□□□□□ -1.11
MATR3-228ENST00000620916 CNKSR2Q8WXI2 1034 aa8.11□□□□□ -1.11
MATR3-228ENST00000620916 ATAD2BQ9ULI0 1458 aa8.1□□□□□ -1.11
MATR3-228ENST00000620916 FOXD4L1Q9NU39 408 aa8.1□□□□□ -1.11
MATR3-228ENST00000620916 CENPBP07199 599 aaPredicted RBP8.07□□□□□ -1.12
MATR3-228ENST00000620916 PDS5BQ9NTI5 1447 aa8.06□□□□□ -1.12
MATR3-228ENST00000620916 EIF5BO60841 1220 aaKnown RBP8.04□□□□□ -1.12
MATR3-228ENST00000620916 AMER1Q5JTC6 1135 aaPredicted RBP8.04□□□□□ -1.12
MATR3-228ENST00000620916 SMARCA4P51532 1647 aa8.02□□□□□ -1.13
MATR3-228ENST00000620916 PRDM2Q13029 1718 aa8.02□□□□□ -1.13
MATR3-228ENST00000620916 TRIM41Q8WV44 630 aa8.01□□□□□ -1.13
MATR3-228ENST00000620916 BAZ1BQ9UIG0 1483 aaKnown RBP8□□□□□ -1.13
MATR3-228ENST00000620916 FKBP8Q14318 412 aa8□□□□□ -1.13
MATR3-228ENST00000620916 NESP48681 1621 aa7.99□□□□□ -1.13
MATR3-228ENST00000620916 WDR62O43379 1518 aa7.99□□□□□ -1.13
MATR3-228ENST00000620916 BAZ1AQ9NRL2 1556 aaPredicted RBP7.99□□□□□ -1.13
MATR3-228ENST00000620916 MRC2Q9UBG0 1479 aa7.98□□□□□ -1.13
MATR3-228ENST00000620916 KIF21AQ7Z4S6 1674 aa7.96□□□□□ -1.14
MATR3-228ENST00000620916 OSCARQ8IYS5 282 aa7.94□□□□□ -1.14
MATR3-228ENST00000620916 CADPSQ9ULU8 1353 aa7.93□□□□□ -1.14
MATR3-228ENST00000620916 SLC4A2P04920 1241 aa7.92□□□□□ -1.14
MATR3-228ENST00000620916 UBE2Q2Q8WVN8 375 aa7.89□□□□□ -1.15
MATR3-228ENST00000620916 ANP32EQ9BTT0 268 aa7.89□□□□□ -1.15
MATR3-228ENST00000620916 ACIN1Q9UKV3 1341 aaKnown RBP7.88□□□□□ -1.15
MATR3-228ENST00000620916 CEP164Q9UPV0 1460 aa7.86□□□□□ -1.15
MATR3-228ENST00000620916 RIMBP3CA6NJZ7 1639 aa7.84□□□□□ -1.15
MATR3-228ENST00000620916 RIMBP3BA6NNM3 1639 aa7.84□□□□□ -1.15
MATR3-228ENST00000620916 RIMBP3Q9UFD9 1639 aa7.84□□□□□ -1.15
MATR3-228ENST00000620916 PPARGC1BQ86YN6 1023 aaKnown RBP7.84□□□□□ -1.15
MATR3-228ENST00000620916 RNF216Q9NWF9 866 aaPredicted RBP7.8□□□□□ -1.16
MATR3-228ENST00000620916 FANCD2Q9BXW9 1451 aa7.8□□□□□ -1.16
MATR3-228ENST00000620916 ARHGEF11O15085 1522 aa7.79□□□□□ -1.16
MATR3-228ENST00000620916 CFTRP13569 1480 aa7.79□□□□□ -1.16
MATR3-228ENST00000620916 ZEB1P37275 1124 aaPredicted RBP7.78□□□□□ -1.16
MATR3-228ENST00000620916 IFT140Q96RY7 1462 aa7.77□□□□□ -1.17
MATR3-228ENST00000620916 WDR97A6NE52 1622 aa7.77□□□□□ -1.17
MATR3-228ENST00000620916 RSF1Q96T23 1441 aaPredicted RBP7.77□□□□□ -1.17
MATR3-228ENST00000620916 MROH2BQ7Z745 1585 aa7.77□□□□□ -1.17
MATR3-228ENST00000620916 ARXQ96QS3 562 aa7.75□□□□□ -1.17
MATR3-228ENST00000620916 ABCC8Q09428 1581 aa7.75□□□□□ -1.17
MATR3-228ENST00000620916 ATF5Q9Y2D1 282 aaPredicted RBP7.74□□□□□ -1.17
MATR3-228ENST00000620916 URB2Q14146 1524 aaKnown RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms