Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
DEPDC4Q8N2C3 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
DEPDC4Q8N2C3 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC23.6■■□□□ 1.37
DEPDC4Q8N2C3 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
DEPDC4Q8N2C3 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
DEPDC4Q8N2C3 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.59■■□□□ 1.37
DEPDC4Q8N2C3 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC23.59■■□□□ 1.37
DEPDC4Q8N2C3 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
DEPDC4Q8N2C3 AC010864.1-201ENST00000609407 1511 ntBASIC23.59■■□□□ 1.37
DEPDC4Q8N2C3 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
DEPDC4Q8N2C3 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
DEPDC4Q8N2C3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
DEPDC4Q8N2C3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
DEPDC4Q8N2C3 RPS2P35-201ENST00000443417 897 ntBASIC23.58■■□□□ 1.37
DEPDC4Q8N2C3 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.57■■□□□ 1.36
DEPDC4Q8N2C3 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
DEPDC4Q8N2C3 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
DEPDC4Q8N2C3 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC23.57■■□□□ 1.36
DEPDC4Q8N2C3 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
DEPDC4Q8N2C3 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
DEPDC4Q8N2C3 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC23.56■■□□□ 1.36
DEPDC4Q8N2C3 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
DEPDC4Q8N2C3 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
DEPDC4Q8N2C3 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
DEPDC4Q8N2C3 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
DEPDC4Q8N2C3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
DEPDC4Q8N2C3 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.54■■□□□ 1.36
DEPDC4Q8N2C3 MIR3665-201ENST00000578708 105 ntBASIC23.54■■□□□ 1.36
DEPDC4Q8N2C3 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
DEPDC4Q8N2C3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.53■■□□□ 1.36
DEPDC4Q8N2C3 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
DEPDC4Q8N2C3 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
DEPDC4Q8N2C3 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
DEPDC4Q8N2C3 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC23.52■■□□□ 1.36
DEPDC4Q8N2C3 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.52■■□□□ 1.36
DEPDC4Q8N2C3 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
DEPDC4Q8N2C3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.51■■□□□ 1.35
DEPDC4Q8N2C3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
DEPDC4Q8N2C3 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
DEPDC4Q8N2C3 AL162393.1-201ENST00000437852 946 ntBASIC23.49■■□□□ 1.35
DEPDC4Q8N2C3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
DEPDC4Q8N2C3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
DEPDC4Q8N2C3 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
DEPDC4Q8N2C3 AP004833.2-201ENST00000532228 1454 ntBASIC23.49■■□□□ 1.35
DEPDC4Q8N2C3 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
DEPDC4Q8N2C3 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
DEPDC4Q8N2C3 MIR762-201ENST00000390236 83 ntBASIC23.47■■□□□ 1.35
DEPDC4Q8N2C3 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
DEPDC4Q8N2C3 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.35
DEPDC4Q8N2C3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.45■■□□□ 1.35
DEPDC4Q8N2C3 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 DENR-202ENST00000455982 1052 ntTSL 5 BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 AC005559.1-201ENST00000589661 871 ntBASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
DEPDC4Q8N2C3 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
DEPDC4Q8N2C3 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.44■■□□□ 1.34
DEPDC4Q8N2C3 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
DEPDC4Q8N2C3 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
DEPDC4Q8N2C3 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
DEPDC4Q8N2C3 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
DEPDC4Q8N2C3 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
DEPDC4Q8N2C3 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
DEPDC4Q8N2C3 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC23.43■■□□□ 1.34
DEPDC4Q8N2C3 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
DEPDC4Q8N2C3 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
DEPDC4Q8N2C3 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
DEPDC4Q8N2C3 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
DEPDC4Q8N2C3 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
DEPDC4Q8N2C3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC23.41■■□□□ 1.34
DEPDC4Q8N2C3 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
DEPDC4Q8N2C3 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
DEPDC4Q8N2C3 NRG1-221ENST00000614767 762 ntTSL 5 BASIC23.4■■□□□ 1.34
DEPDC4Q8N2C3 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
DEPDC4Q8N2C3 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
DEPDC4Q8N2C3 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC23.39■■□□□ 1.33
DEPDC4Q8N2C3 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 LINC01003-201ENST00000564834 1764 ntBASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
DEPDC4Q8N2C3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.37■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms