RNA–Protein interactions for RNA: ENST00000325438.12

PACS2-201, Transcript of phosphofurin acidic cluster sorting protein 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PACS2, Length 3,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PACS2-201ENST00000325438 NISCHQ9Y2I1 1504 aa43.56■■■■■ 4.56
PACS2-201ENST00000325438 SUPT5HO00267 1087 aaKnown RBP40.72■■■■■ 4.11
PACS2-201ENST00000325438 SHROOM4Q9ULL8 1493 aa40.65■■■■■ 4.1
PACS2-201ENST00000325438 PCGF6Q9BYE7 350 aa39.84■■■■□ 3.97
PACS2-201ENST00000325438 DCAF8L2P0C7V8 631 aa39.65■■■■□ 3.94
PACS2-201ENST00000325438 HRCP23327 699 aa39.53■■■■□ 3.92
PACS2-201ENST00000325438 PPARGC1BQ86YN6 1023 aaKnown RBP39.41■■■■□ 3.9
PACS2-201ENST00000325438 CHIC1Q5VXU3 224 aa38.72■■■■□ 3.79
PACS2-201ENST00000325438 EHMT2Q96KQ7 1210 aa38.53■■■■□ 3.76
PACS2-201ENST00000325438 LOC105371045A0A1W2PR82 267 aa38.5■■■■□ 3.75
PACS2-201ENST00000325438 MYO15BQ96JP2 1530 aa38.14■■■■□ 3.7
PACS2-201ENST00000325438 FAM9AQ8IZU1 332 aaPredicted RBP38.02■■■■□ 3.68
PACS2-201ENST00000325438 TRIM26Q12899 539 aaPredicted RBP37.92■■■■□ 3.66
PACS2-201ENST00000325438 PELP1Q8IZL8 1130 aaKnown RBP37.9■■■■□ 3.66
PACS2-201ENST00000325438 ZEB1P37275 1124 aaPredicted RBP37.56■■■■□ 3.6
PACS2-201ENST00000325438 TTBK1Q5TCY1 1321 aaPredicted RBP37.42■■■■□ 3.58
PACS2-201ENST00000325438 SCAF1Q9H7N4 1312 aaKnown RBP37.34■■■■□ 3.57
PACS2-201ENST00000325438 TRIM41Q8WV44 630 aa37.29■■■■□ 3.56
PACS2-201ENST00000325438 CCER1Q8TC90 406 aaPredicted RBP37.16■■■■□ 3.54
PACS2-201ENST00000325438 DCAF1Q9Y4B6 1507 aa37.04■■■■□ 3.52
PACS2-201ENST00000325438 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.98■■■■□ 3.51
PACS2-201ENST00000325438 CENPBP07199 599 aaPredicted RBP36.91■■■■□ 3.5
PACS2-201ENST00000325438 YTHDC1Q96MU7 727 aaKnown RBP36.91■■■■□ 3.5
PACS2-201ENST00000325438 GTF3C3Q9Y5Q9 886 aa36.8■■■■□ 3.48
PACS2-201ENST00000325438 ZCCHC6Q5VYS8 1495 aaKnown RBP36.73■■■■□ 3.47
PACS2-201ENST00000325438 NEUROD1Q13562 356 aa36.68■■■■□ 3.46
PACS2-201ENST00000325438 ACIN1Q9UKV3 1341 aaKnown RBP36.66■■■■□ 3.46
PACS2-201ENST00000325438 DIEXFQ68CQ4 756 aaKnown RBP36.58■■■■□ 3.45
PACS2-201ENST00000325438 MYT1Q01538 1121 aa36.42■■■■□ 3.42
PACS2-201ENST00000325438 CCDC180Q9P1Z9 1646 aa36.26■■■■□ 3.4
PACS2-201ENST00000325438 RANGAP1P46060 587 aaPredicted RBP35.91■■■■□ 3.34
PACS2-201ENST00000325438 UBTFP17480 764 aaKnown RBP35.87■■■■□ 3.33
PACS2-201ENST00000325438 HNRNPUL2Q1KMD3 747 aaKnown RBP35.84■■■■□ 3.33
PACS2-201ENST00000325438 ZNF316A6NFI3 1004 aaPredicted RBP35.68■■■■□ 3.3
PACS2-201ENST00000325438 APLP2Q06481 763 aa35.54■■■■□ 3.28
PACS2-201ENST00000325438 MIER1Q8N108 512 aa35.5■■■■□ 3.27
PACS2-201ENST00000325438 RSF1Q96T23 1441 aaPredicted RBP35.37■■■■□ 3.25
PACS2-201ENST00000325438 BCANQ96GW7 911 aa35.17■■■■□ 3.22
PACS2-201ENST00000325438 SCRIBQ14160 1630 aa35.14■■■■□ 3.22
PACS2-201ENST00000325438 RB1CC1Q8TDY2 1594 aa35.01■■■■□ 3.2
PACS2-201ENST00000325438 ITGAEP38570 1179 aa34.95■■■■□ 3.19
PACS2-201ENST00000325438 CSRNP3Q8WYN3 585 aa34.79■■■■□ 3.16
PACS2-201ENST00000325438 ABCC9O60706 1549 aa34.72■■■■□ 3.15
PACS2-201ENST00000325438 CEP162Q5TB80 1403 aa34.7■■■■□ 3.15
PACS2-201ENST00000325438 NEFLP07196 543 aa34.66■■■■□ 3.14
PACS2-201ENST00000325438 SUPT16HQ9Y5B9 1047 aaKnown RBP34.64■■■■□ 3.14
PACS2-201ENST00000325438 CECR2Q9BXF3 1484 aa34.62■■■■□ 3.13
PACS2-201ENST00000325438 ERICH6Q7L0X2 663 aa34.54■■■■□ 3.12
PACS2-201ENST00000325438 FKBP8Q14318 412 aa34.47■■■■□ 3.11
PACS2-201ENST00000325438 ANP32EQ9BTT0 268 aa34.42■■■■□ 3.1
PACS2-201ENST00000325438 SOGA1O94964 1423 aa34.39■■■■□ 3.1
PACS2-201ENST00000325438 ATP1B4Q9UN42 357 aaPredicted RBP34.35■■■■□ 3.09
PACS2-201ENST00000325438 TSHZ2Q9NRE2 1034 aa34.33■■■■□ 3.09
PACS2-201ENST00000325438 BCL11AQ9H165 835 aa34.29■■■■□ 3.08
PACS2-201ENST00000325438 MROH2BQ7Z745 1585 aa34.27■■■■□ 3.08
PACS2-201ENST00000325438 CCDC88BA6NC98 1476 aa34.27■■■■□ 3.08
PACS2-201ENST00000325438 TNIKQ9UKE5 1360 aa34.25■■■■□ 3.07
PACS2-201ENST00000325438 ABCC8Q09428 1581 aa34.24■■■■□ 3.07
PACS2-201ENST00000325438 DDX10Q13206 875 aaKnown RBP34.21■■■■□ 3.07
PACS2-201ENST00000325438 TRIM52Q96A61 297 aa34.19■■■■□ 3.06
PACS2-201ENST00000325438 KCNH8Q96L42 1107 aa34.17■■■■□ 3.06
PACS2-201ENST00000325438 HIRIP3Q9BW71 556 aaPredicted RBP34.17■■■■□ 3.06
PACS2-201ENST00000325438 CLSPNQ9HAW4 1339 aa34.11■■■■□ 3.05
PACS2-201ENST00000325438 PABPN1Q86U42 306 aaKnown RBP eCLIP34.05■■■■□ 3.041e-6■■■■□ 24.5
PACS2-201ENST00000325438 CLIP1P30622 1438 aa34.05■■■■□ 3.04
PACS2-201ENST00000325438 WIZO95785 1651 aa34.02■■■■□ 3.04
PACS2-201ENST00000325438 RUSC2Q8N2Y8 1516 aa34.02■■■■□ 3.04
PACS2-201ENST00000325438 WRNQ14191 1432 aaPredicted RBP eCLIP34.01■■■■□ 3.03
PACS2-201ENST00000325438 IRX6P78412 446 aaPredicted RBP33.94■■■■□ 3.02
PACS2-201ENST00000325438 GOLGA3Q08378 1498 aa33.92■■■■□ 3.02
PACS2-201ENST00000325438 FAM50AQ14320 339 aaKnown RBP33.91■■■■□ 3.02
PACS2-201ENST00000325438 CNGB1Q14028 1251 aaPredicted RBP33.9■■■■□ 3.02
PACS2-201ENST00000325438 ANP32CO43423 234 aa33.83■■■■□ 3.01
PACS2-201ENST00000325438 RBM19Q9Y4C8 960 aaKnown RBP33.8■■■■□ 3
PACS2-201ENST00000325438 CDK11AQ9UQ88 783 aaPredicted RBP33.71■■■□□ 2.99
PACS2-201ENST00000325438 KANK4Q5T7N3 995 aaPredicted RBP33.69■■■□□ 2.98
PACS2-201ENST00000325438 EEA1Q15075 1411 aa33.66■■■□□ 2.98
PACS2-201ENST00000325438 SIN3AQ96ST3 1273 aa33.66■■■□□ 2.98
PACS2-201ENST00000325438 HNRNPUQ00839 825 aaKnown RBP eCLIP33.61■■■□□ 2.97
PACS2-201ENST00000325438 DHX57Q6P158 1386 aaKnown RBP33.58■■■□□ 2.97
PACS2-201ENST00000325438 P3H3Q8IVL6 736 aa33.55■■■□□ 2.96
PACS2-201ENST00000325438 VPS8Q8N3P4 1428 aa33.55■■■□□ 2.96
PACS2-201ENST00000325438 CEP164Q9UPV0 1460 aa33.52■■■□□ 2.96
PACS2-201ENST00000325438 NBR1Q14596 966 aa33.44■■■□□ 2.94
PACS2-201ENST00000325438 POLR3GLQ9BT43 218 aa33.42■■■□□ 2.94
PACS2-201ENST00000325438 BAZ1AQ9NRL2 1556 aaPredicted RBP33.4■■■□□ 2.94
PACS2-201ENST00000325438 RAPGEF2Q9Y4G8 1499 aa33.29■■■□□ 2.92
PACS2-201ENST00000325438 SENP3-EIF4A1A0A087X0R7 540 aa33.27■■■□□ 2.92
PACS2-201ENST00000325438 FAM9BQ8IZU0 186 aa33.25■■■□□ 2.91
PACS2-201ENST00000325438 CCNB3Q8WWL7 1395 aa33.2■■■□□ 2.9
PACS2-201ENST00000325438 NACADO15069 1562 aa33.18■■■□□ 2.9
PACS2-201ENST00000325438 RTL5Q5HYW3 569 aaPredicted RBP33.16■■■□□ 2.9
PACS2-201ENST00000325438 RAB3GAP2Q9H2M9 1393 aa33.14■■■□□ 2.9
PACS2-201ENST00000325438 TOP2AP11388 1531 aaKnown RBP33.13■■■□□ 2.89
PACS2-201ENST00000325438 TONSLQ96HA7 1378 aa33.13■■■□□ 2.89
PACS2-201ENST00000325438 B4GALNT3Q6L9W6 998 aa33.12■■■□□ 2.89
PACS2-201ENST00000325438 MSH5O43196 834 aa33.06■■■□□ 2.88
PACS2-201ENST00000325438 DEKP35659 375 aaKnown RBP33.03■■■□□ 2.88
PACS2-201ENST00000325438 SMARCA2P51531 1590 aa33.02■■■□□ 2.88
PACS2-201ENST00000325438 NPM2Q86SE8 214 aaKnown RBP33■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms