RNA–Protein interactions for RNA: ENST00000345057.8

TRADD-201, Transcript of TNFRSF1A associated via death domain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRADD, Length 1,877 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRADD-201ENST00000345057 NISCHQ9Y2I1 1504 aa56.52■■■■■ 6.64
TRADD-201ENST00000345057 CCDC180Q9P1Z9 1646 aa49.25■■■■■ 5.47
TRADD-201ENST00000345057 ZCCHC6Q5VYS8 1495 aaKnown RBP47.55■■■■■ 5.2
TRADD-201ENST00000345057 DCAF1Q9Y4B6 1507 aa46.84■■■■■ 5.09
TRADD-201ENST00000345057 DCAF8L2P0C7V8 631 aa46.51■■■■■ 5.04
TRADD-201ENST00000345057 ABCC9O60706 1549 aa46.24■■■■■ 4.99
TRADD-201ENST00000345057 MYO15BQ96JP2 1530 aa46.22■■■■■ 4.99
TRADD-201ENST00000345057 SHROOM4Q9ULL8 1493 aa46.14■■■■■ 4.98
TRADD-201ENST00000345057 NACADO15069 1562 aa45.81■■■■■ 4.92
TRADD-201ENST00000345057 RB1CC1Q8TDY2 1594 aa45.34■■■■■ 4.85
TRADD-201ENST00000345057 SCRIBQ14160 1630 aa45.2■■■■■ 4.83
TRADD-201ENST00000345057 SUPT5HO00267 1087 aaKnown RBP44.59■■■■■ 4.73
TRADD-201ENST00000345057 UNC13AQ9UPW8 1703 aa44.3■■■■■ 4.68
TRADD-201ENST00000345057 RSF1Q96T23 1441 aaPredicted RBP43.92■■■■■ 4.62
TRADD-201ENST00000345057 BICRAQ9NZM4 1560 aa43.85■■■■■ 4.61
TRADD-201ENST00000345057 CECR2Q9BXF3 1484 aa43.8■■■■■ 4.6
TRADD-201ENST00000345057 BAZ1AQ9NRL2 1556 aaPredicted RBP43.69■■■■■ 4.58
TRADD-201ENST00000345057 MROH2BQ7Z745 1585 aa43.61■■■■■ 4.57
TRADD-201ENST00000345057 PABPN1Q86U42 306 aaKnown RBP eCLIP43.56■■■■■ 4.56
TRADD-201ENST00000345057 SMARCA4P51532 1647 aa43.39■■■■■ 4.54
TRADD-201ENST00000345057 WIZO95785 1651 aa43.26■■■■■ 4.52
TRADD-201ENST00000345057 TOP2AP11388 1531 aaKnown RBP42.92■■■■■ 4.46
TRADD-201ENST00000345057 PEG3Q9GZU2 1588 aa42.91■■■■■ 4.46
TRADD-201ENST00000345057 CHIC1Q5VXU3 224 aa42.84■■■■■ 4.45
TRADD-201ENST00000345057 SMARCA2P51531 1590 aa42.68■■■■■ 4.42
TRADD-201ENST00000345057 ATAD2BQ9ULI0 1458 aa42.61■■■■■ 4.41
TRADD-201ENST00000345057 EIF4G1Q04637 1599 aaKnown RBP42.56■■■■■ 4.4
TRADD-201ENST00000345057 CCDC88BA6NC98 1476 aa42.43■■■■■ 4.38
TRADD-201ENST00000345057 BAZ1BQ9UIG0 1483 aaKnown RBP42.42■■■■■ 4.38
TRADD-201ENST00000345057 NCAPD3P42695 1498 aa42.24■■■■■ 4.35
TRADD-201ENST00000345057 HMGXB3Q12766 1538 aa42.24■■■■■ 4.35
TRADD-201ENST00000345057 DNAJC5BQ9UF47 199 aa42.19■■■■■ 4.35
TRADD-201ENST00000345057 TRIM41Q8WV44 630 aa42■■■■■ 4.31
TRADD-201ENST00000345057 CC2D2AQ9P2K1 1620 aa41.84■■■■■ 4.29
TRADD-201ENST00000345057 ABCC8Q09428 1581 aa41.56■■■■■ 4.24
TRADD-201ENST00000345057 WRNQ14191 1432 aaPredicted RBP eCLIP41.38■■■■■ 4.21
TRADD-201ENST00000345057 CFTRP13569 1480 aa41.36■■■■■ 4.21
TRADD-201ENST00000345057 PRDM2Q13029 1718 aa41.2■■■■■ 4.19
TRADD-201ENST00000345057 CADPSQ9ULU8 1353 aa41.17■■■■■ 4.18
TRADD-201ENST00000345057 SYNJ1O43426 1573 aa41.12■■■■■ 4.17
TRADD-201ENST00000345057 LOC105371045A0A1W2PR82 267 aa41.12■■■■■ 4.17
TRADD-201ENST00000345057 FAM9AQ8IZU1 332 aaPredicted RBP41.11■■■■■ 4.17
TRADD-201ENST00000345057 EEA1Q15075 1411 aa41.04■■■■■ 4.16
TRADD-201ENST00000345057 TOP2BQ02880 1626 aa41.02■■■■■ 4.16
TRADD-201ENST00000345057 BIVM-ERCC5R4GMW8 1640 aa40.97■■■■■ 4.15
TRADD-201ENST00000345057 SOGA1O94964 1423 aa40.85■■■■■ 4.13
TRADD-201ENST00000345057 LAMC3Q9Y6N6 1575 aa40.8■■■■■ 4.12
TRADD-201ENST00000345057 CUX1P39880 1505 aa40.78■■■■■ 4.12
TRADD-201ENST00000345057 FANCD2Q9BXW9 1451 aa40.7■■■■■ 4.11
TRADD-201ENST00000345057 CSRNP3Q8WYN3 585 aa40.67■■■■■ 4.1
TRADD-201ENST00000345057 RUSC2Q8N2Y8 1516 aa40.63■■■■■ 4.09
TRADD-201ENST00000345057 NESP48681 1621 aa40.59■■■■■ 4.09
TRADD-201ENST00000345057 PDS5BQ9NTI5 1447 aa40.48■■■■■ 4.07
TRADD-201ENST00000345057 CEP164Q9UPV0 1460 aa40.45■■■■■ 4.07
TRADD-201ENST00000345057 EHMT2Q96KQ7 1210 aa40.43■■■■■ 4.06
TRADD-201ENST00000345057 DNMBPQ6XZF7 1577 aa40.42■■■■■ 4.06
TRADD-201ENST00000345057 GOLGA3Q08378 1498 aa40.41■■■■■ 4.06
TRADD-201ENST00000345057 KIF21BO75037 1637 aa40.41■■■■■ 4.06
TRADD-201ENST00000345057 KIF27Q86VH2 1401 aa40.35■■■■■ 4.05
TRADD-201ENST00000345057 TNIKQ9UKE5 1360 aa40.32■■■■■ 4.05
TRADD-201ENST00000345057 FGD5Q6ZNL6 1462 aa40.32■■■■■ 4.05
TRADD-201ENST00000345057 TOPBP1Q92547 1522 aa40.27■■■■■ 4.04
TRADD-201ENST00000345057 UBTFP17480 764 aaKnown RBP40.17■■■■■ 4.02
TRADD-201ENST00000345057 KIF21AQ7Z4S6 1674 aa40.16■■■■■ 4.02
TRADD-201ENST00000345057 URB2Q14146 1524 aaKnown RBP40.12■■■■■ 4.01
TRADD-201ENST00000345057 ERICH3Q5RHP9 1530 aa40.12■■■■■ 4.01
TRADD-201ENST00000345057 CUX2O14529 1486 aa40.12■■■■■ 4.01
TRADD-201ENST00000345057 POLA1P09884 1462 aaPredicted RBP40.1■■■■■ 4.01
TRADD-201ENST00000345057 PRXQ9BXM0 1461 aa40.09■■■■■ 4.01
TRADD-201ENST00000345057 CEP162Q5TB80 1403 aa40.08■■■■■ 4.01
TRADD-201ENST00000345057 RAPGEF2Q9Y4G8 1499 aa40.04■■■■■ 4
TRADD-201ENST00000345057 ABCA10Q8WWZ4 1543 aa40.02■■■■■ 4
TRADD-201ENST00000345057 MRC2Q9UBG0 1479 aa39.91■■■■□ 3.98
TRADD-201ENST00000345057 RAD54L2Q9Y4B4 1467 aa39.9■■■■□ 3.98
TRADD-201ENST00000345057 IGF1RP08069 1367 aa39.89■■■■□ 3.98
TRADD-201ENST00000345057 WDR97A6NE52 1622 aa39.82■■■■□ 3.97
TRADD-201ENST00000345057 ERCC6Q03468 1493 aa39.81■■■■□ 3.96
TRADD-201ENST00000345057 CLIP1P30622 1438 aa39.74■■■■□ 3.95
TRADD-201ENST00000345057 CARMIL1Q5VZK9 1371 aa39.72■■■■□ 3.95
TRADD-201ENST00000345057 WDR62O43379 1518 aa39.68■■■■□ 3.94
TRADD-201ENST00000345057 CUL7Q14999 1698 aa39.66■■■■□ 3.94
TRADD-201ENST00000345057 ABCA5Q8WWZ7 1642 aa39.65■■■■□ 3.94
TRADD-201ENST00000345057 TARBP1Q13395 1621 aaKnown RBP39.64■■■■□ 3.94
TRADD-201ENST00000345057 TRIM26Q12899 539 aaPredicted RBP39.64■■■■□ 3.94
TRADD-201ENST00000345057 PCGF6Q9BYE7 350 aa39.58■■■■□ 3.93
TRADD-201ENST00000345057 GAPVD1Q14C86 1478 aa39.56■■■■□ 3.92
TRADD-201ENST00000345057 TDRD9Q8NDG6 1382 aaKnown RBP39.5■■■■□ 3.91
TRADD-201ENST00000345057 IFT140Q96RY7 1462 aa39.49■■■■□ 3.91
TRADD-201ENST00000345057 THOC2Q8NI27 1593 aaKnown RBP39.45■■■■□ 3.91
TRADD-201ENST00000345057 VPS8Q8N3P4 1428 aa39.44■■■■□ 3.9
TRADD-201ENST00000345057 PBRM1Q86U86 1689 aa39.3■■■■□ 3.88
TRADD-201ENST00000345057 RANGAP1P46060 587 aaPredicted RBP39.3■■■■□ 3.88
TRADD-201ENST00000345057 ARAP1Q96P48 1450 aa39.25■■■■□ 3.87
TRADD-201ENST00000345057 GRIN2BQ13224 1484 aa39.24■■■■□ 3.87
TRADD-201ENST00000345057 ARHGAP35Q9NRY4 1499 aa39.22■■■■□ 3.87
TRADD-201ENST00000345057 AQRO60306 1485 aaKnown RBP eCLIP39.21■■■■□ 3.87
TRADD-201ENST00000345057 CTTNBP2Q8WZ74 1663 aa39.2■■■■□ 3.87
TRADD-201ENST00000345057 FHAD1B1AJZ9 1412 aa39.18■■■■□ 3.86
TRADD-201ENST00000345057 APLP2Q06481 763 aa39.14■■■■□ 3.86
TRADD-201ENST00000345057 PPARGC1BQ86YN6 1023 aaKnown RBP39.12■■■■□ 3.85
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms