RNA–Protein interactions for RNA: ENST00000461841.7

CDH23-208, Transcript of cadherin related 23, human

TSL 5 BASIC

Gene CDH23, Length 2,000 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDH23-208	ENST00000461841	NISCH	Q9Y2I1	1504 aa		56.9	■■■■■ 6.7
CDH23-208	ENST00000461841	CCDC180	Q9P1Z9	1646 aa		49.35	■■■■■ 5.49
CDH23-208	ENST00000461841	ZCCHC6	Q5VYS8	1495 aa	Known RBP	47.85	■■■■■ 5.25
CDH23-208	ENST00000461841	DCAF8L2	P0C7V8	631 aa		47.04	■■■■■ 5.12
CDH23-208	ENST00000461841	DCAF1	Q9Y4B6	1507 aa		46.98	■■■■■ 5.11
CDH23-208	ENST00000461841	SHROOM4	Q9ULL8	1493 aa		46.78	■■■■■ 5.08
CDH23-208	ENST00000461841	ABCC9	O60706	1549 aa		46.54	■■■■■ 5.04
CDH23-208	ENST00000461841	MYO15B	Q96JP2	1530 aa		46.29	■■■■■ 5
CDH23-208	ENST00000461841	NACAD	O15069	1562 aa		45.93	■■■■■ 4.94
CDH23-208	ENST00000461841	SCRIB	Q14160	1630 aa		45.55	■■■■■ 4.88
CDH23-208	ENST00000461841	RB1CC1	Q8TDY2	1594 aa		45.46	■■■■■ 4.87
CDH23-208	ENST00000461841	SUPT5H	O00267	1087 aa	Known RBP	45.19	■■■■■ 4.82
CDH23-208	ENST00000461841	UNC13A	Q9UPW8	1703 aa		44.6	■■■■■ 4.73
CDH23-208	ENST00000461841	RSF1	Q96T23	1441 aa	Predicted RBP	44.32	■■■■■ 4.69
CDH23-208	ENST00000461841	CECR2	Q9BXF3	1484 aa		44.26	■■■■■ 4.68
CDH23-208	ENST00000461841	BICRA	Q9NZM4	1560 aa		44.17	■■■■■ 4.66
CDH23-208	ENST00000461841	PABPN1	Q86U42	306 aa	Known RBP eCLIP	44.04	■■■■■ 4.64
CDH23-208	ENST00000461841	MROH2B	Q7Z745	1585 aa		44.02	■■■■■ 4.64
CDH23-208	ENST00000461841	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	43.88	■■■■■ 4.61
CDH23-208	ENST00000461841	WIZ	O95785	1651 aa		43.67	■■■■■ 4.58
CDH23-208	ENST00000461841	SMARCA4	P51532	1647 aa		43.65	■■■■■ 4.58
CDH23-208	ENST00000461841	CHIC1	Q5VXU3	224 aa		43.4	■■■■■ 4.54
CDH23-208	ENST00000461841	TOP2A	P11388	1531 aa	Known RBP	43.15	■■■■■ 4.5
CDH23-208	ENST00000461841	PEG3	Q9GZU2	1588 aa		43.09	■■■■■ 4.49
CDH23-208	ENST00000461841	ATAD2B	Q9ULI0	1458 aa		42.89	■■■■■ 4.46
CDH23-208	ENST00000461841	SMARCA2	P51531	1590 aa		42.81	■■■■■ 4.44
CDH23-208	ENST00000461841	CCDC88B	A6NC98	1476 aa		42.8	■■■■■ 4.44
CDH23-208	ENST00000461841	EIF4G1	Q04637	1599 aa	Known RBP	42.78	■■■■■ 4.44
CDH23-208	ENST00000461841	BAZ1B	Q9UIG0	1483 aa	Known RBP	42.65	■■■■■ 4.42
CDH23-208	ENST00000461841	NCAPD3	P42695	1498 aa		42.45	■■■■■ 4.39
CDH23-208	ENST00000461841	TRIM41	Q8WV44	630 aa		42.42	■■■■■ 4.38
CDH23-208	ENST00000461841	HMGXB3	Q12766	1538 aa		42.36	■■■■■ 4.37
CDH23-208	ENST00000461841	CC2D2A	Q9P2K1	1620 aa		42.08	■■■■■ 4.33
CDH23-208	ENST00000461841	ABCC8	Q09428	1581 aa		42.02	■■■■■ 4.32
CDH23-208	ENST00000461841	LOC105371045	A0A1W2PR82	267 aa		41.83	■■■■■ 4.29
CDH23-208	ENST00000461841	FAM9A	Q8IZU1	332 aa	Predicted RBP	41.71	■■■■■ 4.27
CDH23-208	ENST00000461841	WRN	Q14191	1432 aa	Predicted RBP eCLIP	41.68	■■■■■ 4.26
CDH23-208	ENST00000461841	CFTR	P13569	1480 aa		41.61	■■■■■ 4.25
CDH23-208	ENST00000461841	SYNJ1	O43426	1573 aa		41.49	■■■■■ 4.23
CDH23-208	ENST00000461841	CADPS	Q9ULU8	1353 aa		41.41	■■■■■ 4.22
CDH23-208	ENST00000461841	SOGA1	O94964	1423 aa		41.33	■■■■■ 4.21
CDH23-208	ENST00000461841	PRDM2	Q13029	1718 aa		41.29	■■■■■ 4.2
CDH23-208	ENST00000461841	TOP2B	Q02880	1626 aa		41.27	■■■■■ 4.2
CDH23-208	ENST00000461841	EEA1	Q15075	1411 aa		41.19	■■■■■ 4.18
CDH23-208	ENST00000461841	BIVM-ERCC5	R4GMW8	1640 aa		41.19	■■■■■ 4.18
CDH23-208	ENST00000461841	RUSC2	Q8N2Y8	1516 aa		41.17	■■■■■ 4.18
CDH23-208	ENST00000461841	EHMT2	Q96KQ7	1210 aa		41.16	■■■■■ 4.18
CDH23-208	ENST00000461841	CUX1	P39880	1505 aa		41.12	■■■■■ 4.17
CDH23-208	ENST00000461841	DNAJC5B	Q9UF47	199 aa		41.11	■■■■■ 4.17
CDH23-208	ENST00000461841	CSRNP3	Q8WYN3	585 aa		41.05	■■■■■ 4.16
CDH23-208	ENST00000461841	NES	P48681	1621 aa		40.99	■■■■■ 4.15
CDH23-208	ENST00000461841	FANCD2	Q9BXW9	1451 aa		40.94	■■■■■ 4.15
CDH23-208	ENST00000461841	LAMC3	Q9Y6N6	1575 aa		40.9	■■■■■ 4.14
CDH23-208	ENST00000461841	GOLGA3	Q08378	1498 aa		40.67	■■■■■ 4.1
CDH23-208	ENST00000461841	KIF21B	O75037	1637 aa		40.64	■■■■■ 4.1
CDH23-208	ENST00000461841	CEP164	Q9UPV0	1460 aa		40.64	■■■■■ 4.1
CDH23-208	ENST00000461841	TNIK	Q9UKE5	1360 aa		40.64	■■■■■ 4.1
CDH23-208	ENST00000461841	PDS5B	Q9NTI5	1447 aa		40.62	■■■■■ 4.09
CDH23-208	ENST00000461841	FGD5	Q6ZNL6	1462 aa		40.61	■■■■■ 4.09
CDH23-208	ENST00000461841	DNMBP	Q6XZF7	1577 aa		40.59	■■■■■ 4.09
CDH23-208	ENST00000461841	KIF27	Q86VH2	1401 aa		40.58	■■■■■ 4.09
CDH23-208	ENST00000461841	UBTF	P17480	764 aa	Known RBP	40.57	■■■■■ 4.08
CDH23-208	ENST00000461841	TOPBP1	Q92547	1522 aa		40.53	■■■■■ 4.08
CDH23-208	ENST00000461841	CEP162	Q5TB80	1403 aa		40.46	■■■■■ 4.07
CDH23-208	ENST00000461841	RAPGEF2	Q9Y4G8	1499 aa		40.45	■■■■■ 4.07
CDH23-208	ENST00000461841	URB2	Q14146	1524 aa	Known RBP	40.43	■■■■■ 4.06
CDH23-208	ENST00000461841	CUX2	O14529	1486 aa		40.42	■■■■■ 4.06
CDH23-208	ENST00000461841	KIF21A	Q7Z4S6	1674 aa		40.41	■■■■■ 4.06
CDH23-208	ENST00000461841	PRX	Q9BXM0	1461 aa		40.41	■■■■■ 4.06
CDH23-208	ENST00000461841	POLA1	P09884	1462 aa	Predicted RBP	40.38	■■■■■ 4.05
CDH23-208	ENST00000461841	ERICH3	Q5RHP9	1530 aa		40.31	■■■■■ 4.04
CDH23-208	ENST00000461841	RAD54L2	Q9Y4B4	1467 aa		40.29	■■■■■ 4.04
CDH23-208	ENST00000461841	IGF1R	P08069	1367 aa		40.25	■■■■■ 4.03
CDH23-208	ENST00000461841	ABCA10	Q8WWZ4	1543 aa		40.24	■■■■■ 4.03
CDH23-208	ENST00000461841	PCGF6	Q9BYE7	350 aa		40.23	■■■■■ 4.03
CDH23-208	ENST00000461841	TRIM26	Q12899	539 aa	Predicted RBP	40.08	■■■■■ 4.01
CDH23-208	ENST00000461841	CLIP1	P30622	1438 aa		40.07	■■■■■ 4.01
CDH23-208	ENST00000461841	MRC2	Q9UBG0	1479 aa		40.06	■■■■■ 4
CDH23-208	ENST00000461841	WDR97	A6NE52	1622 aa		40.03	■■■■■ 4
CDH23-208	ENST00000461841	CARMIL1	Q5VZK9	1371 aa		40.03	■■■■■ 4
CDH23-208	ENST00000461841	TDRD9	Q8NDG6	1382 aa	Known RBP	39.89	■■■■□ 3.98
CDH23-208	ENST00000461841	TARBP1	Q13395	1621 aa	Known RBP	39.89	■■■■□ 3.98
CDH23-208	ENST00000461841	RANGAP1	P46060	587 aa	Predicted RBP	39.88	■■■■□ 3.97
CDH23-208	ENST00000461841	ABCA5	Q8WWZ7	1642 aa		39.86	■■■■□ 3.97
CDH23-208	ENST00000461841	PPARGC1B	Q86YN6	1023 aa	Known RBP	39.85	■■■■□ 3.97
CDH23-208	ENST00000461841	WDR62	O43379	1518 aa		39.83	■■■■□ 3.97
CDH23-208	ENST00000461841	ERCC6	Q03468	1493 aa		39.82	■■■■□ 3.97
CDH23-208	ENST00000461841	GAPVD1	Q14C86	1478 aa		39.81	■■■■□ 3.96
CDH23-208	ENST00000461841	CUL7	Q14999	1698 aa		39.78	■■■■□ 3.96
CDH23-208	ENST00000461841	VPS8	Q8N3P4	1428 aa		39.74	■■■■□ 3.95
CDH23-208	ENST00000461841	THOC2	Q8NI27	1593 aa	Known RBP	39.63	■■■■□ 3.94
CDH23-208	ENST00000461841	ARAP1	Q96P48	1450 aa		39.63	■■■■□ 3.94
CDH23-208	ENST00000461841	IFT140	Q96RY7	1462 aa		39.62	■■■■□ 3.93
CDH23-208	ENST00000461841	ARHGAP35	Q9NRY4	1499 aa		39.58	■■■■□ 3.93
CDH23-208	ENST00000461841	AQR	O60306	1485 aa	Known RBP eCLIP	39.57	■■■■□ 3.93
CDH23-208	ENST00000461841	PBRM1	Q86U86	1689 aa		39.49	■■■■□ 3.91
CDH23-208	ENST00000461841	ZNF608	Q9ULD9	1512 aa	Predicted RBP	39.48	■■■■□ 3.91
CDH23-208	ENST00000461841	TTBK1	Q5TCY1	1321 aa	Predicted RBP	39.45	■■■■□ 3.91
CDH23-208	ENST00000461841	GRIN2B	Q13224	1484 aa		39.42	■■■■□ 3.9
CDH23-208	ENST00000461841	CTTNBP2	Q8WZ74	1663 aa		39.39	■■■■□ 3.9

Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms