RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 NISCHQ9Y2I1 1504 aa55.95■■■■■ 6.55
SHOX2-201ENST00000389589 CCDC180Q9P1Z9 1646 aa48.63■■■■■ 5.37
SHOX2-201ENST00000389589 ZCCHC6Q5VYS8 1495 aaKnown RBP47.1■■■■■ 5.13
SHOX2-201ENST00000389589 DCAF1Q9Y4B6 1507 aa46.29■■■■■ 5
SHOX2-201ENST00000389589 DCAF8L2P0C7V8 631 aa46.01■■■■■ 4.96
SHOX2-201ENST00000389589 SHROOM4Q9ULL8 1493 aa45.94■■■■■ 4.94
SHOX2-201ENST00000389589 MYO15BQ96JP2 1530 aa45.56■■■■■ 4.88
SHOX2-201ENST00000389589 ABCC9O60706 1549 aa45.44■■■■■ 4.86
SHOX2-201ENST00000389589 NACADO15069 1562 aa45.14■■■■■ 4.82
SHOX2-201ENST00000389589 SCRIBQ14160 1630 aa44.73■■■■■ 4.75
SHOX2-201ENST00000389589 RB1CC1Q8TDY2 1594 aa44.64■■■■■ 4.74
SHOX2-201ENST00000389589 SUPT5HO00267 1087 aaKnown RBP44.46■■■■■ 4.71
SHOX2-201ENST00000389589 UNC13AQ9UPW8 1703 aa43.82■■■■■ 4.61
SHOX2-201ENST00000389589 RSF1Q96T23 1441 aaPredicted RBP43.57■■■■■ 4.57
SHOX2-201ENST00000389589 CECR2Q9BXF3 1484 aa43.4■■■■■ 4.54
SHOX2-201ENST00000389589 BICRAQ9NZM4 1560 aa43.25■■■■■ 4.51
SHOX2-201ENST00000389589 MROH2BQ7Z745 1585 aa43.23■■■■■ 4.51
SHOX2-201ENST00000389589 BAZ1AQ9NRL2 1556 aaPredicted RBP43.19■■■■■ 4.5
SHOX2-201ENST00000389589 WIZO95785 1651 aa42.94■■■■■ 4.46
SHOX2-201ENST00000389589 SMARCA4P51532 1647 aa42.93■■■■■ 4.46
SHOX2-201ENST00000389589 PABPN1Q86U42 306 aaKnown RBP eCLIP42.93■■■■■ 4.46
SHOX2-201ENST00000389589 CHIC1Q5VXU3 224 aa42.84■■■■■ 4.45
SHOX2-201ENST00000389589 TOP2AP11388 1531 aaKnown RBP42.5■■■■■ 4.39
SHOX2-201ENST00000389589 PEG3Q9GZU2 1588 aa42.39■■■■■ 4.38
SHOX2-201ENST00000389589 SMARCA2P51531 1590 aa42.12■■■■■ 4.33
SHOX2-201ENST00000389589 ATAD2BQ9ULI0 1458 aa42.06■■■■■ 4.32
SHOX2-201ENST00000389589 CCDC88BA6NC98 1476 aa42.06■■■■■ 4.32
SHOX2-201ENST00000389589 EIF4G1Q04637 1599 aaKnown RBP41.97■■■■■ 4.31
SHOX2-201ENST00000389589 BAZ1BQ9UIG0 1483 aaKnown RBP41.88■■■■■ 4.29
SHOX2-201ENST00000389589 TRIM41Q8WV44 630 aa41.8■■■■■ 4.28
SHOX2-201ENST00000389589 HMGXB3Q12766 1538 aa41.64■■■■■ 4.26
SHOX2-201ENST00000389589 NCAPD3P42695 1498 aa41.62■■■■■ 4.25
SHOX2-201ENST00000389589 ABCC8Q09428 1581 aa41.33■■■■■ 4.21
SHOX2-201ENST00000389589 LOC105371045A0A1W2PR82 267 aa41.19■■■■■ 4.18
SHOX2-201ENST00000389589 CC2D2AQ9P2K1 1620 aa41.18■■■■■ 4.18
SHOX2-201ENST00000389589 WRNQ14191 1432 aaPredicted RBP eCLIP41.02■■■■■ 4.16
SHOX2-201ENST00000389589 FAM9AQ8IZU1 332 aaPredicted RBP41.01■■■■■ 4.16
SHOX2-201ENST00000389589 CFTRP13569 1480 aa40.84■■■■■ 4.13
SHOX2-201ENST00000389589 SYNJ1O43426 1573 aa40.84■■■■■ 4.13
SHOX2-201ENST00000389589 PRDM2Q13029 1718 aa40.79■■■■■ 4.12
SHOX2-201ENST00000389589 EEA1Q15075 1411 aa40.74■■■■■ 4.11
SHOX2-201ENST00000389589 TOP2BQ02880 1626 aa40.66■■■■■ 4.1
SHOX2-201ENST00000389589 SOGA1O94964 1423 aa40.63■■■■■ 4.1
SHOX2-201ENST00000389589 BIVM-ERCC5R4GMW8 1640 aa40.63■■■■■ 4.1
SHOX2-201ENST00000389589 CADPSQ9ULU8 1353 aa40.58■■■■■ 4.09
SHOX2-201ENST00000389589 RUSC2Q8N2Y8 1516 aa40.45■■■■■ 4.07
SHOX2-201ENST00000389589 CSRNP3Q8WYN3 585 aa40.42■■■■■ 4.06
SHOX2-201ENST00000389589 CUX1P39880 1505 aa40.39■■■■■ 4.06
SHOX2-201ENST00000389589 EHMT2Q96KQ7 1210 aa40.39■■■■■ 4.06
SHOX2-201ENST00000389589 KIF21BO75037 1637 aa40.19■■■■■ 4.02
SHOX2-201ENST00000389589 GOLGA3Q08378 1498 aa40.18■■■■■ 4.02
SHOX2-201ENST00000389589 LAMC3Q9Y6N6 1575 aa40.17■■■■■ 4.02
SHOX2-201ENST00000389589 FANCD2Q9BXW9 1451 aa40.15■■■■■ 4.02
SHOX2-201ENST00000389589 TNIKQ9UKE5 1360 aa40.13■■■■■ 4.02
SHOX2-201ENST00000389589 CEP164Q9UPV0 1460 aa40.13■■■■■ 4.02
SHOX2-201ENST00000389589 NESP48681 1621 aa40.05■■■■■ 4
SHOX2-201ENST00000389589 UBTFP17480 764 aaKnown RBP39.95■■■■□ 3.99
SHOX2-201ENST00000389589 CEP162Q5TB80 1403 aa39.95■■■■□ 3.99
SHOX2-201ENST00000389589 KIF27Q86VH2 1401 aa39.95■■■■□ 3.99
SHOX2-201ENST00000389589 DNMBPQ6XZF7 1577 aa39.91■■■■□ 3.98
SHOX2-201ENST00000389589 FGD5Q6ZNL6 1462 aa39.88■■■■□ 3.97
SHOX2-201ENST00000389589 DNAJC5BQ9UF47 199 aa39.87■■■■□ 3.97
SHOX2-201ENST00000389589 PCGF6Q9BYE7 350 aa39.86■■■■□ 3.97
SHOX2-201ENST00000389589 ERICH3Q5RHP9 1530 aa39.82■■■■□ 3.96
SHOX2-201ENST00000389589 PDS5BQ9NTI5 1447 aa39.81■■■■□ 3.96
SHOX2-201ENST00000389589 RAPGEF2Q9Y4G8 1499 aa39.8■■■■□ 3.96
SHOX2-201ENST00000389589 PRXQ9BXM0 1461 aa39.79■■■■□ 3.96
SHOX2-201ENST00000389589 TRIM26Q12899 539 aaPredicted RBP39.78■■■■□ 3.96
SHOX2-201ENST00000389589 TOPBP1Q92547 1522 aa39.78■■■■□ 3.96
SHOX2-201ENST00000389589 CUX2O14529 1486 aa39.71■■■■□ 3.95
SHOX2-201ENST00000389589 KIF21AQ7Z4S6 1674 aa39.65■■■■□ 3.94
SHOX2-201ENST00000389589 POLA1P09884 1462 aaPredicted RBP39.61■■■■□ 3.93
SHOX2-201ENST00000389589 URB2Q14146 1524 aaKnown RBP39.61■■■■□ 3.93
SHOX2-201ENST00000389589 ABCA10Q8WWZ4 1543 aa39.55■■■■□ 3.92
SHOX2-201ENST00000389589 CLIP1P30622 1438 aa39.53■■■■□ 3.92
SHOX2-201ENST00000389589 IGF1RP08069 1367 aa39.51■■■■□ 3.92
SHOX2-201ENST00000389589 RAD54L2Q9Y4B4 1467 aa39.47■■■■□ 3.91
SHOX2-201ENST00000389589 WDR97A6NE52 1622 aa39.42■■■■□ 3.9
SHOX2-201ENST00000389589 CARMIL1Q5VZK9 1371 aa39.34■■■■□ 3.89
SHOX2-201ENST00000389589 MRC2Q9UBG0 1479 aa39.27■■■■□ 3.88
SHOX2-201ENST00000389589 VPS8Q8N3P4 1428 aa39.27■■■■□ 3.88
SHOX2-201ENST00000389589 CUL7Q14999 1698 aa39.26■■■■□ 3.87
SHOX2-201ENST00000389589 ABCA5Q8WWZ7 1642 aa39.21■■■■□ 3.87
SHOX2-201ENST00000389589 PPARGC1BQ86YN6 1023 aaKnown RBP39.2■■■■□ 3.87
SHOX2-201ENST00000389589 TARBP1Q13395 1621 aaKnown RBP39.16■■■■□ 3.86
SHOX2-201ENST00000389589 HRCP23327 699 aa39.14■■■■□ 3.86
SHOX2-201ENST00000389589 RANGAP1P46060 587 aaPredicted RBP39.1■■■■□ 3.85
SHOX2-201ENST00000389589 GAPVD1Q14C86 1478 aa39.08■■■■□ 3.85
SHOX2-201ENST00000389589 ARAP1Q96P48 1450 aa39.07■■■■□ 3.85
SHOX2-201ENST00000389589 WDR62O43379 1518 aa39.05■■■■□ 3.84
SHOX2-201ENST00000389589 TDRD9Q8NDG6 1382 aaKnown RBP39.03■■■■□ 3.84
SHOX2-201ENST00000389589 ARHGAP35Q9NRY4 1499 aa38.98■■■■□ 3.83
SHOX2-201ENST00000389589 ERCC6Q03468 1493 aa38.94■■■■□ 3.82
SHOX2-201ENST00000389589 CTTNBP2Q8WZ74 1663 aa38.91■■■■□ 3.82
SHOX2-201ENST00000389589 APLP2Q06481 763 aa38.91■■■■□ 3.82
SHOX2-201ENST00000389589 PBRM1Q86U86 1689 aa38.89■■■■□ 3.82
SHOX2-201ENST00000389589 IFT140Q96RY7 1462 aa38.88■■■■□ 3.81
SHOX2-201ENST00000389589 THOC2Q8NI27 1593 aaKnown RBP38.82■■■■□ 3.81
SHOX2-201ENST00000389589 TTBK1Q5TCY1 1321 aaPredicted RBP38.79■■■■□ 3.8
SHOX2-201ENST00000389589 EFCAB5A4FU69 1503 aa38.72■■■■□ 3.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms