RNA–Protein interactions for RNA: ENST00000564834.1

LINC01003-201, Transcript of long intergenic non-protein coding RNA 1003, humanhuman

BASIC

Gene LINC01003, Length 1,764 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01003-201ENST00000564834 NISCHQ9Y2I1 1504 aa56.63■■■■■ 6.66
LINC01003-201ENST00000564834 CCDC180Q9P1Z9 1646 aa49.31■■■■■ 5.49
LINC01003-201ENST00000564834 ZCCHC6Q5VYS8 1495 aaKnown RBP47.65■■■■■ 5.22
LINC01003-201ENST00000564834 DCAF1Q9Y4B6 1507 aa46.86■■■■■ 5.09
LINC01003-201ENST00000564834 DCAF8L2P0C7V8 631 aa46.58■■■■■ 5.05
LINC01003-201ENST00000564834 SHROOM4Q9ULL8 1493 aa46.32■■■■■ 5.01
LINC01003-201ENST00000564834 ABCC9O60706 1549 aa46.3■■■■■ 5
LINC01003-201ENST00000564834 MYO15BQ96JP2 1530 aa46.21■■■■■ 4.99
LINC01003-201ENST00000564834 NACADO15069 1562 aa45.83■■■■■ 4.93
LINC01003-201ENST00000564834 RB1CC1Q8TDY2 1594 aa45.37■■■■■ 4.85
LINC01003-201ENST00000564834 SCRIBQ14160 1630 aa45.34■■■■■ 4.85
LINC01003-201ENST00000564834 SUPT5HO00267 1087 aaKnown RBP44.69■■■■■ 4.75
LINC01003-201ENST00000564834 UNC13AQ9UPW8 1703 aa44.55■■■■■ 4.72
LINC01003-201ENST00000564834 RSF1Q96T23 1441 aaPredicted RBP44.02■■■■■ 4.64
LINC01003-201ENST00000564834 BICRAQ9NZM4 1560 aa44■■■■■ 4.63
LINC01003-201ENST00000564834 CECR2Q9BXF3 1484 aa43.95■■■■■ 4.63
LINC01003-201ENST00000564834 MROH2BQ7Z745 1585 aa43.75■■■■■ 4.59
LINC01003-201ENST00000564834 BAZ1AQ9NRL2 1556 aaPredicted RBP43.72■■■■■ 4.59
LINC01003-201ENST00000564834 PABPN1Q86U42 306 aaKnown RBP eCLIP43.68■■■■■ 4.58
LINC01003-201ENST00000564834 SMARCA4P51532 1647 aa43.51■■■■■ 4.56
LINC01003-201ENST00000564834 WIZO95785 1651 aa43.44■■■■■ 4.54
LINC01003-201ENST00000564834 TOP2AP11388 1531 aaKnown RBP42.99■■■■■ 4.47
LINC01003-201ENST00000564834 PEG3Q9GZU2 1588 aa42.98■■■■■ 4.47
LINC01003-201ENST00000564834 CHIC1Q5VXU3 224 aa42.94■■■■■ 4.46
LINC01003-201ENST00000564834 SMARCA2P51531 1590 aa42.7■■■■■ 4.43
LINC01003-201ENST00000564834 ATAD2BQ9ULI0 1458 aa42.68■■■■■ 4.42
LINC01003-201ENST00000564834 EIF4G1Q04637 1599 aaKnown RBP42.65■■■■■ 4.42
LINC01003-201ENST00000564834 CCDC88BA6NC98 1476 aa42.53■■■■■ 4.4
LINC01003-201ENST00000564834 BAZ1BQ9UIG0 1483 aaKnown RBP42.47■■■■■ 4.39
LINC01003-201ENST00000564834 HMGXB3Q12766 1538 aa42.28■■■■■ 4.36
LINC01003-201ENST00000564834 NCAPD3P42695 1498 aa42.27■■■■■ 4.36
LINC01003-201ENST00000564834 TRIM41Q8WV44 630 aa42.01■■■■■ 4.32
LINC01003-201ENST00000564834 CC2D2AQ9P2K1 1620 aa41.95■■■■■ 4.31
LINC01003-201ENST00000564834 ABCC8Q09428 1581 aa41.73■■■■■ 4.27
LINC01003-201ENST00000564834 WRNQ14191 1432 aaPredicted RBP eCLIP41.43■■■■■ 4.22
LINC01003-201ENST00000564834 CFTRP13569 1480 aa41.42■■■■■ 4.22
LINC01003-201ENST00000564834 PRDM2Q13029 1718 aa41.34■■■■■ 4.21
LINC01003-201ENST00000564834 LOC105371045A0A1W2PR82 267 aa41.28■■■■■ 4.2
LINC01003-201ENST00000564834 SYNJ1O43426 1573 aa41.27■■■■■ 4.2
LINC01003-201ENST00000564834 FAM9AQ8IZU1 332 aaPredicted RBP41.22■■■■■ 4.19
LINC01003-201ENST00000564834 CADPSQ9ULU8 1353 aa41.2■■■■■ 4.19
LINC01003-201ENST00000564834 TOP2BQ02880 1626 aa41.11■■■■■ 4.17
LINC01003-201ENST00000564834 DNAJC5BQ9UF47 199 aa41.08■■■■■ 4.17
LINC01003-201ENST00000564834 BIVM-ERCC5R4GMW8 1640 aa41.07■■■■■ 4.17
LINC01003-201ENST00000564834 EEA1Q15075 1411 aa41■■■■■ 4.15
LINC01003-201ENST00000564834 SOGA1O94964 1423 aa40.98■■■■■ 4.15
LINC01003-201ENST00000564834 CUX1P39880 1505 aa40.9■■■■■ 4.14
LINC01003-201ENST00000564834 LAMC3Q9Y6N6 1575 aa40.83■■■■■ 4.13
LINC01003-201ENST00000564834 RUSC2Q8N2Y8 1516 aa40.81■■■■■ 4.12
LINC01003-201ENST00000564834 FANCD2Q9BXW9 1451 aa40.76■■■■■ 4.12
LINC01003-201ENST00000564834 NESP48681 1621 aa40.75■■■■■ 4.11
LINC01003-201ENST00000564834 CSRNP3Q8WYN3 585 aa40.69■■■■■ 4.1
LINC01003-201ENST00000564834 EHMT2Q96KQ7 1210 aa40.61■■■■■ 4.09
LINC01003-201ENST00000564834 CEP164Q9UPV0 1460 aa40.48■■■■■ 4.07
LINC01003-201ENST00000564834 KIF21BO75037 1637 aa40.48■■■■■ 4.07
LINC01003-201ENST00000564834 DNMBPQ6XZF7 1577 aa40.47■■■■■ 4.07
LINC01003-201ENST00000564834 PDS5BQ9NTI5 1447 aa40.46■■■■■ 4.07
LINC01003-201ENST00000564834 GOLGA3Q08378 1498 aa40.44■■■■■ 4.06
LINC01003-201ENST00000564834 FGD5Q6ZNL6 1462 aa40.41■■■■■ 4.06
LINC01003-201ENST00000564834 KIF27Q86VH2 1401 aa40.36■■■■■ 4.05
LINC01003-201ENST00000564834 TOPBP1Q92547 1522 aa40.36■■■■■ 4.05
LINC01003-201ENST00000564834 TNIKQ9UKE5 1360 aa40.35■■■■■ 4.05
LINC01003-201ENST00000564834 KIF21AQ7Z4S6 1674 aa40.33■■■■■ 4.05
LINC01003-201ENST00000564834 URB2Q14146 1524 aaKnown RBP40.24■■■■■ 4.03
LINC01003-201ENST00000564834 UBTFP17480 764 aaKnown RBP40.19■■■■■ 4.02
LINC01003-201ENST00000564834 CUX2O14529 1486 aa40.19■■■■■ 4.02
LINC01003-201ENST00000564834 POLA1P09884 1462 aaPredicted RBP40.19■■■■■ 4.02
LINC01003-201ENST00000564834 PRXQ9BXM0 1461 aa40.17■■■■■ 4.02
LINC01003-201ENST00000564834 CEP162Q5TB80 1403 aa40.16■■■■■ 4.02
LINC01003-201ENST00000564834 RAPGEF2Q9Y4G8 1499 aa40.16■■■■■ 4.02
LINC01003-201ENST00000564834 ERICH3Q5RHP9 1530 aa40.16■■■■■ 4.02
LINC01003-201ENST00000564834 ABCA10Q8WWZ4 1543 aa40.08■■■■■ 4.01
LINC01003-201ENST00000564834 RAD54L2Q9Y4B4 1467 aa40.02■■■■■ 4
LINC01003-201ENST00000564834 WDR97A6NE52 1622 aa39.97■■■■□ 3.99
LINC01003-201ENST00000564834 IGF1RP08069 1367 aa39.95■■■■□ 3.99
LINC01003-201ENST00000564834 MRC2Q9UBG0 1479 aa39.94■■■■□ 3.98
LINC01003-201ENST00000564834 CLIP1P30622 1438 aa39.78■■■■□ 3.96
LINC01003-201ENST00000564834 CARMIL1Q5VZK9 1371 aa39.76■■■■□ 3.96
LINC01003-201ENST00000564834 TARBP1Q13395 1621 aaKnown RBP39.76■■■■□ 3.95
LINC01003-201ENST00000564834 ABCA5Q8WWZ7 1642 aa39.76■■■■□ 3.95
LINC01003-201ENST00000564834 WDR62O43379 1518 aa39.74■■■■□ 3.95
LINC01003-201ENST00000564834 CUL7Q14999 1698 aa39.7■■■■□ 3.95
LINC01003-201ENST00000564834 ERCC6Q03468 1493 aa39.69■■■■□ 3.94
LINC01003-201ENST00000564834 PCGF6Q9BYE7 350 aa39.69■■■■□ 3.94
LINC01003-201ENST00000564834 TRIM26Q12899 539 aaPredicted RBP39.65■■■■□ 3.94
LINC01003-201ENST00000564834 GAPVD1Q14C86 1478 aa39.61■■■■□ 3.93
LINC01003-201ENST00000564834 TDRD9Q8NDG6 1382 aaKnown RBP39.59■■■■□ 3.93
LINC01003-201ENST00000564834 THOC2Q8NI27 1593 aaKnown RBP39.58■■■■□ 3.93
LINC01003-201ENST00000564834 IFT140Q96RY7 1462 aa39.5■■■■□ 3.91
LINC01003-201ENST00000564834 VPS8Q8N3P4 1428 aa39.49■■■■□ 3.91
LINC01003-201ENST00000564834 PBRM1Q86U86 1689 aa39.44■■■■□ 3.9
LINC01003-201ENST00000564834 RANGAP1P46060 587 aaPredicted RBP39.41■■■■□ 3.9
LINC01003-201ENST00000564834 ARAP1Q96P48 1450 aa39.37■■■■□ 3.89
LINC01003-201ENST00000564834 CTTNBP2Q8WZ74 1663 aa39.32■■■■□ 3.89
LINC01003-201ENST00000564834 ARHGAP35Q9NRY4 1499 aa39.32■■■■□ 3.88
LINC01003-201ENST00000564834 AQRO60306 1485 aaKnown RBP eCLIP39.31■■■■□ 3.88
LINC01003-201ENST00000564834 PPARGC1BQ86YN6 1023 aaKnown RBP39.3■■■■□ 3.88
LINC01003-201ENST00000564834 GRIN2BQ13224 1484 aa39.26■■■■□ 3.88
LINC01003-201ENST00000564834 ZNF608Q9ULD9 1512 aaPredicted RBP39.25■■■■□ 3.87
LINC01003-201ENST00000564834 ADAMTS12P58397 1594 aa39.21■■■■□ 3.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms