Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 GRINA-209ENST00000533377 627 ntTSL 221.58■■□□□ 1.056e-10■■■■□ 23.3
UPF1Q92900 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.212e-14■■■■□ 23.3
UPF1Q92900 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.292e-14■■■■□ 23.3
UPF1Q92900 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.46■□□□□ 0.077e-9■■■■□ 23.3
UPF1Q92900 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.17e-9■■■■□ 23.3
UPF1Q92900 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC39.79■■■■□ 3.969e-8■■■■□ 23.3
UPF1Q92900 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.159e-8■■■■□ 23.3
UPF1Q92900 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC26.93■■□□□ 1.99e-8■■■■□ 23.3
UPF1Q92900 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC21.22■□□□□ 0.999e-8■■■■□ 23.3
UPF1Q92900 AGTRAP-207ENST00000471765 717 ntTSL 310.3□□□□□ -0.769e-8■■■■□ 23.3
UPF1Q92900 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.076e-12■■■■□ 23.3
UPF1Q92900 PSMD13-211ENST00000532025 653 ntTSL 323.73■■□□□ 1.392e-10■■■■□ 23.3
UPF1Q92900 PSMD13-202ENST00000382671 1489 ntTSL 1 (best)21.82■■□□□ 1.082e-10■■■■□ 23.3
UPF1Q92900 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC20.6■□□□□ 0.892e-10■■■■□ 23.3
UPF1Q92900 PSMD13-204ENST00000525665 1632 ntTSL 519.58■□□□□ 0.732e-10■■■■□ 23.3
UPF1Q92900 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.562e-10■■■■□ 23.3
UPF1Q92900 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC18.41■□□□□ 0.542e-10■■■■□ 23.3
UPF1Q92900 PSMD13-201ENST00000352303 1427 ntTSL 5 BASIC17.36■□□□□ 0.372e-10■■■■□ 23.3
UPF1Q92900 PSMD13-205ENST00000526783 892 ntTSL 516.43■□□□□ 0.222e-10■■■■□ 23.3
UPF1Q92900 PSMD13-207ENST00000527982 2200 nt13.99□□□□□ -0.172e-10■■■■□ 23.3
UPF1Q92900 MAP4-201ENST00000335271 1564 ntAPPRIS ALT2 TSL 219.38■□□□□ 0.696e-19■■■■□ 23.3
UPF1Q92900 SMG7-214ENST00000508461 3985 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.372e-6■■■■□ 23.3
UPF1Q92900 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.814e-7■■■■□ 23.3
UPF1Q92900 ATP6AP1-209ENST00000491569 2079 ntTSL 224.61■■□□□ 1.538e-7■■■■□ 23.3
UPF1Q92900 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.288e-7■■■■□ 23.3
UPF1Q92900 ATP6AP1-207ENST00000455205 4515 ntTSL 215.57■□□□□ 0.088e-7■■■■□ 23.3
UPF1Q92900 ATP6AP1-210ENST00000619046 2823 ntTSL 1 (best) BASIC13.44□□□□□ -0.268e-7■■■■□ 23.3
UPF1Q92900 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.121e-6■■■■□ 23.3
UPF1Q92900 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.264e-6■■■■□ 23.3
UPF1Q92900 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.374e-6■■■■□ 23.3
UPF1Q92900 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC23.81■■□□□ 1.44e-6■■■■□ 23.3
UPF1Q92900 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.53■□□□□ 0.564e-6■■■■□ 23.3
UPF1Q92900 UNC119-205ENST00000484980 4189 ntTSL 2 BASIC9.72□□□□□ -0.854e-6■■■■□ 23.3
UPF1Q92900 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.477e-17■■■■□ 23.3
UPF1Q92900 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.325e-7■■■■□ 23.3
UPF1Q92900 HADHA-201ENST00000380649 3037 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.632e-11■■■■□ 23.3
UPF1Q92900 SLC1A4-203ENST00000480594 5789 ntTSL 210.66□□□□□ -0.75e-7■■■■□ 23.3
UPF1Q92900 MAPK3-206ENST00000461737 612 ntTSL 223.81■■□□□ 1.42e-6■■■■□ 23.2
UPF1Q92900 PIN1-202ENST00000380889 1670 ntTSL 1 (best)26.38■■□□□ 1.812e-10■■■■□ 23.2
UPF1Q92900 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.62e-10■■■■□ 23.2
UPF1Q92900 PIN1-209ENST00000590540 702 ntTSL 320.14■□□□□ 0.812e-10■■■■□ 23.2
UPF1Q92900 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.812e-10■■■■□ 23.2
UPF1Q92900 PIN1-210ENST00000591777 533 ntTSL 318.79■□□□□ 0.62e-10■■■■□ 23.2
UPF1Q92900 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.19■□□□□ 0.53e-6■■■■□ 23.2
UPF1Q92900 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.453e-6■■■■□ 23.2
UPF1Q92900 PIN1-204ENST00000586025 4022 ntTSL 215.73■□□□□ 0.112e-10■■■■□ 23.2
UPF1Q92900 FNBP1-204ENST00000446176 5393 ntAPPRIS P2 TSL 1 (best) BASIC10.69□□□□□ -0.73e-6■■■■□ 23.2
UPF1Q92900 BACH1-208ENST00000468059 663 ntTSL 312.24□□□□□ -0.451e-6■■■■□ 23.2
UPF1Q92900 BACH1-203ENST00000422809 850 ntTSL 512.24□□□□□ -0.451e-6■■■■□ 23.2
UPF1Q92900 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.321e-6■■■■□ 23.2
UPF1Q92900 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.411e-6■■■■□ 23.2
UPF1Q92900 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.062e-6■■■■□ 23.2
UPF1Q92900 MICALL1-202ENST00000402631 2734 ntTSL 1 (best)14.27□□□□□ -0.132e-6■■■■□ 23.2
UPF1Q92900 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.282e-6■■■■□ 23.2
UPF1Q92900 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.44e-7■■■■□ 23.2
UPF1Q92900 SP1-202ENST00000426431 7603 ntTSL 1 (best) BASIC10.29□□□□□ -0.766e-11■■■■□ 23.2
UPF1Q92900 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC21.43■■□□□ 1.025e-6■■■■□ 23.2
UPF1Q92900 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.625e-6■■■■□ 23.2
UPF1Q92900 ILVBL-206ENST00000533086 4248 ntTSL 212.23□□□□□ -0.455e-6■■■■□ 23.2
UPF1Q92900 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC13.09□□□□□ -0.315e-7■■■■□ 23.2
UPF1Q92900 PIGT-206ENST00000455050 1807 ntTSL 219.05■□□□□ 0.641e-22■■■■□ 23.2
UPF1Q92900 PIGT-249ENST00000639872 1498 ntTSL 212.52□□□□□ -0.411e-22■■■■□ 23.2
UPF1Q92900 PPME1-208ENST00000543525 1928 ntTSL 1 (best)16.31■□□□□ 0.24e-10■■■■□ 23.2
UPF1Q92900 PPME1-202ENST00000398427 2496 ntTSL 1 (best) BASIC14.66□□□□□ -0.064e-10■■■■□ 23.2
UPF1Q92900 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.294e-10■■■■□ 23.2
UPF1Q92900 PPME1-205ENST00000539021 4055 ntTSL 28.32□□□□□ -1.084e-10■■■■□ 23.2
UPF1Q92900 PPME1-206ENST00000541340 3618 ntTSL 1 (best)7.27□□□□□ -1.254e-10■■■■□ 23.2
UPF1Q92900 KCTD7-210ENST00000640601 855 ntTSL 517.89■□□□□ 0.459e-8■■■■□ 23.2
UPF1Q92900 CXorf38-203ENST00000378426 4895 ntTSL 2 BASIC13.34□□□□□ -0.271e-6■■■■□ 23.2
UPF1Q92900 TSPYL1-201ENST00000368608 3326 ntAPPRIS P1 BASIC11.55□□□□□ -0.563e-7■■■■□ 23.1
UPF1Q92900 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC33■■■□□ 2.871e-6■■■■□ 23.1
UPF1Q92900 SPG7-205ENST00000561945 411 ntTSL 321.78■■□□□ 1.083e-6■■■■□ 23.1
UPF1Q92900 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.12■□□□□ 0.973e-6■■■■□ 23.1
UPF1Q92900 SPG7-207ENST00000563218 654 ntTSL 520.15■□□□□ 0.823e-6■■■■□ 23.1
UPF1Q92900 SPG7-216ENST00000567138 1361 ntTSL 217.43■□□□□ 0.383e-6■■■■□ 23.1
UPF1Q92900 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.22e-10■■■■□ 23.1
UPF1Q92900 NEK6-203ENST00000373600 3619 ntTSL 1 (best) BASIC12.49□□□□□ -0.414e-8■■■■□ 23.1
UPF1Q92900 NEK6-201ENST00000320246 3447 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.64e-8■■■■□ 23.1
UPF1Q92900 NEK6-204ENST00000373603 3447 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.994e-8■■■■□ 23.1
UPF1Q92900 PTK2B-203ENST00000397501 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.486e-9■■■■□ 23.1
UPF1Q92900 PTK2B-210ENST00000517339 3914 ntTSL 2 BASIC9.84□□□□□ -0.836e-9■■■■□ 23.1
UPF1Q92900 PTK2B-201ENST00000346049 4147 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.896e-9■■■■□ 23.1
UPF1Q92900 PTK2B-205ENST00000420218 3941 ntTSL 5 BASIC8.79□□□□□ -16e-9■■■■□ 23.1
UPF1Q92900 SPRY4-201ENST00000344120 4938 ntTSL 1 (best) BASIC12.44□□□□□ -0.424e-6■■■■□ 23.1
UPF1Q92900 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.414e-9■■■■□ 23.1
UPF1Q92900 CHMP6-202ENST00000571457 552 ntTSL 317.77■□□□□ 0.444e-9■■■■□ 23.1
UPF1Q92900 RRP7A-201ENST00000323013 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.626e-7■■■■□ 23.1
UPF1Q92900 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.44e-7■■■■□ 23.1
UPF1Q92900 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.034e-7■■■■□ 23.1
UPF1Q92900 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.157e-7■■■■□ 23.1
UPF1Q92900 MS4A3-202ENST00000358152 1516 ntTSL 5 BASIC13.69□□□□□ -0.227e-7■■■■□ 23.1
UPF1Q92900 MS4A3-207ENST00000528952 923 ntTSL 210.67□□□□□ -0.77e-7■■■■□ 23.1
UPF1Q92900 KREMEN1-206ENST00000479755 503 ntTSL 418.22■□□□□ 0.512e-6■■■■□ 23.1
UPF1Q92900 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.132e-6■■■■□ 23.1
UPF1Q92900 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.342e-6■■■■□ 23.1
UPF1Q92900 WDR48-202ENST00000413099 2300 ntTSL 28.3□□□□□ -1.083e-12■■■■□ 23.1
UPF1Q92900 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC16.54■□□□□ 0.245e-7■■■■□ 23.1
UPF1Q92900 TMEM106A-204ENST00000588659 1437 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.292e-18■■■■□ 23.1
UPF1Q92900 VOPP1-214ENST00000462326 536 ntTSL 427.1■■□□□ 1.935e-7■■■■□ 23.1
UPF1Q92900 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.775e-7■■■■□ 23.1
Retrieved 100 of 15,879 protein–RNA pairs in 199.9 ms