RNA–Protein interactions for RNA: ENST00000508461.5

SMG7-214, Transcript of SMG7, nonsense mediated mRNA decay factor, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SMG7, Length 3,985 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG7-214ENST00000508461 NISCHQ9Y2I1 1504 aa24.96■■□□□ 1.59
SMG7-214ENST00000508461 DCAF8L2P0C7V8 631 aa22.65■■□□□ 1.22
SMG7-214ENST00000508461 SHROOM4Q9ULL8 1493 aa22.63■■□□□ 1.21
SMG7-214ENST00000508461 SUPT5HO00267 1087 aaKnown RBP22.42■■□□□ 1.18
SMG7-214ENST00000508461 EHMT2Q96KQ7 1210 aa21.16■□□□□ 0.98
SMG7-214ENST00000508461 PCGF6Q9BYE7 350 aa21.1■□□□□ 0.97
SMG7-214ENST00000508461 CHIC1Q5VXU3 224 aa21.07■□□□□ 0.96
SMG7-214ENST00000508461 ZCCHC6Q5VYS8 1495 aaKnown RBP20.95■□□□□ 0.94
SMG7-214ENST00000508461 FAM9AQ8IZU1 332 aaPredicted RBP20.93■□□□□ 0.94
SMG7-214ENST00000508461 LOC105371045A0A1W2PR82 267 aa20.84■□□□□ 0.93
SMG7-214ENST00000508461 CCDC180Q9P1Z9 1646 aa20.68■□□□□ 0.9
SMG7-214ENST00000508461 TRIM41Q8WV44 630 aa20.66■□□□□ 0.9
SMG7-214ENST00000508461 HRCP23327 699 aa20.58■□□□□ 0.88
SMG7-214ENST00000508461 MYO15BQ96JP2 1530 aa20.55■□□□□ 0.88
SMG7-214ENST00000508461 PPARGC1BQ86YN6 1023 aaKnown RBP20.5■□□□□ 0.87
SMG7-214ENST00000508461 TTBK1Q5TCY1 1321 aaPredicted RBP20.42■□□□□ 0.86
SMG7-214ENST00000508461 ABCC9O60706 1549 aa20.38■□□□□ 0.85
SMG7-214ENST00000508461 TRIM26Q12899 539 aaPredicted RBP20.28■□□□□ 0.84
SMG7-214ENST00000508461 SCRIBQ14160 1630 aa20.24■□□□□ 0.83
SMG7-214ENST00000508461 RANGAP1P46060 587 aaPredicted RBP20.01■□□□□ 0.79
SMG7-214ENST00000508461 RSF1Q96T23 1441 aaPredicted RBP19.97■□□□□ 0.79
SMG7-214ENST00000508461 DCAF1Q9Y4B6 1507 aa19.97■□□□□ 0.79
SMG7-214ENST00000508461 CCER1Q8TC90 406 aaPredicted RBP19.95■□□□□ 0.78
SMG7-214ENST00000508461 UBTFP17480 764 aaKnown RBP19.95■□□□□ 0.78
SMG7-214ENST00000508461 ZEB1P37275 1124 aaPredicted RBP19.93■□□□□ 0.78
SMG7-214ENST00000508461 PABPN1Q86U42 306 aaKnown RBP eCLIP19.9■□□□□ 0.78
SMG7-214ENST00000508461 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.81■□□□□ 0.76
SMG7-214ENST00000508461 CECR2Q9BXF3 1484 aa19.74■□□□□ 0.75
SMG7-214ENST00000508461 APLP2Q06481 763 aa19.72■□□□□ 0.75
SMG7-214ENST00000508461 RB1CC1Q8TDY2 1594 aa19.68■□□□□ 0.74
SMG7-214ENST00000508461 MROH2BQ7Z745 1585 aa19.53■□□□□ 0.72
SMG7-214ENST00000508461 HNRNPUL2Q1KMD3 747 aaKnown RBP19.53■□□□□ 0.72
SMG7-214ENST00000508461 NACADO15069 1562 aa19.5■□□□□ 0.71
SMG7-214ENST00000508461 YTHDC1Q96MU7 727 aaKnown RBP19.42■□□□□ 0.7
SMG7-214ENST00000508461 CSRNP3Q8WYN3 585 aa19.42■□□□□ 0.7
SMG7-214ENST00000508461 WIZO95785 1651 aa19.37■□□□□ 0.69
SMG7-214ENST00000508461 DIEXFQ68CQ4 756 aaKnown RBP19.3■□□□□ 0.68
SMG7-214ENST00000508461 CENPBP07199 599 aaPredicted RBP19.3■□□□□ 0.68
SMG7-214ENST00000508461 ATP1B4Q9UN42 357 aaPredicted RBP19.29■□□□□ 0.68
SMG7-214ENST00000508461 ITGAEP38570 1179 aa19.27■□□□□ 0.67
SMG7-214ENST00000508461 ABCC8Q09428 1581 aa19.24■□□□□ 0.67
SMG7-214ENST00000508461 BAZ1AQ9NRL2 1556 aaPredicted RBP19.24■□□□□ 0.67
SMG7-214ENST00000508461 SOGA1O94964 1423 aa19.19■□□□□ 0.66
SMG7-214ENST00000508461 CCDC88BA6NC98 1476 aa19.17■□□□□ 0.66
SMG7-214ENST00000508461 CEP162Q5TB80 1403 aa19.16■□□□□ 0.66
SMG7-214ENST00000508461 WRNQ14191 1432 aaPredicted RBP eCLIP19.03■□□□□ 0.64
SMG7-214ENST00000508461 SCAF1Q9H7N4 1312 aaKnown RBP19.03■□□□□ 0.64
SMG7-214ENST00000508461 GTF3C3Q9Y5Q9 886 aa19■□□□□ 0.63
SMG7-214ENST00000508461 ZNF316A6NFI3 1004 aaPredicted RBP18.99■□□□□ 0.63
SMG7-214ENST00000508461 TNIKQ9UKE5 1360 aa18.98■□□□□ 0.63
SMG7-214ENST00000508461 RUSC2Q8N2Y8 1516 aa18.98■□□□□ 0.63
SMG7-214ENST00000508461 TOP2AP11388 1531 aaKnown RBP18.95■□□□□ 0.62
SMG7-214ENST00000508461 NEUROD1Q13562 356 aa18.95■□□□□ 0.62
SMG7-214ENST00000508461 ACIN1Q9UKV3 1341 aaKnown RBP18.95■□□□□ 0.62
SMG7-214ENST00000508461 CLIP1P30622 1438 aa18.94■□□□□ 0.62
SMG7-214ENST00000508461 GOLGA3Q08378 1498 aa18.93■□□□□ 0.62
SMG7-214ENST00000508461 SMARCA4P51532 1647 aa18.91■□□□□ 0.62
SMG7-214ENST00000508461 BAZ1BQ9UIG0 1483 aaKnown RBP18.88■□□□□ 0.61
SMG7-214ENST00000508461 P3H3Q8IVL6 736 aa18.88■□□□□ 0.61
SMG7-214ENST00000508461 EEA1Q15075 1411 aa18.88■□□□□ 0.61
SMG7-214ENST00000508461 PELP1Q8IZL8 1130 aaKnown RBP18.85■□□□□ 0.61
SMG7-214ENST00000508461 FAM50AQ14320 339 aaKnown RBP18.83■□□□□ 0.6
SMG7-214ENST00000508461 SMARCA2P51531 1590 aa18.82■□□□□ 0.6
SMG7-214ENST00000508461 CEP164Q9UPV0 1460 aa18.78■□□□□ 0.6
SMG7-214ENST00000508461 MIER1Q8N108 512 aa18.74■□□□□ 0.59
SMG7-214ENST00000508461 ATAD2BQ9ULI0 1458 aa18.65■□□□□ 0.58
SMG7-214ENST00000508461 RAPGEF2Q9Y4G8 1499 aa18.63■□□□□ 0.57
SMG7-214ENST00000508461 KANK4Q5T7N3 995 aaPredicted RBP18.61■□□□□ 0.57
SMG7-214ENST00000508461 VPS8Q8N3P4 1428 aa18.6■□□□□ 0.57
SMG7-214ENST00000508461 ARID3CA6NKF2 412 aa18.54■□□□□ 0.56
SMG7-214ENST00000508461 KIF27Q86VH2 1401 aa18.52■□□□□ 0.56
SMG7-214ENST00000508461 SYNJ1O43426 1573 aa18.5■□□□□ 0.55
SMG7-214ENST00000508461 HIRIP3Q9BW71 556 aaPredicted RBP18.47■□□□□ 0.55
SMG7-214ENST00000508461 CNGB1Q14028 1251 aaPredicted RBP18.45■□□□□ 0.54
SMG7-214ENST00000508461 BCANQ96GW7 911 aa18.44■□□□□ 0.54
SMG7-214ENST00000508461 UNC13AQ9UPW8 1703 aa18.44■□□□□ 0.54
SMG7-214ENST00000508461 BICRAQ9NZM4 1560 aa18.43■□□□□ 0.54
SMG7-214ENST00000508461 EIF4G1Q04637 1599 aaKnown RBP18.41■□□□□ 0.54
SMG7-214ENST00000508461 DDX10Q13206 875 aaKnown RBP18.4■□□□□ 0.54
SMG7-214ENST00000508461 CUX2O14529 1486 aa18.4■□□□□ 0.54
SMG7-214ENST00000508461 TRIM52Q96A61 297 aa18.38■□□□□ 0.53
SMG7-214ENST00000508461 NEFLP07196 543 aa18.38■□□□□ 0.53
SMG7-214ENST00000508461 SIN3AQ96ST3 1273 aa18.36■□□□□ 0.53
SMG7-214ENST00000508461 CCNB3Q8WWL7 1395 aa18.34■□□□□ 0.53
SMG7-214ENST00000508461 POLR3GLQ9BT43 218 aa18.33■□□□□ 0.53
SMG7-214ENST00000508461 CARMIL1Q5VZK9 1371 aa18.32■□□□□ 0.52
SMG7-214ENST00000508461 KIF21BO75037 1637 aa18.3■□□□□ 0.52
SMG7-214ENST00000508461 CHIC2Q9UKJ5 165 aa18.3■□□□□ 0.52
SMG7-214ENST00000508461 DHX57Q6P158 1386 aaKnown RBP18.24■□□□□ 0.51
SMG7-214ENST00000508461 ANP32CO43423 234 aa18.24■□□□□ 0.51
SMG7-214ENST00000508461 MTUS2Q5JR59 1369 aa18.22■□□□□ 0.51
SMG7-214ENST00000508461 FBLN2P98095 1184 aa18.2■□□□□ 0.5
SMG7-214ENST00000508461 ARAP1Q96P48 1450 aa18.19■□□□□ 0.5
SMG7-214ENST00000508461 TONSLQ96HA7 1378 aa18.19■□□□□ 0.5
SMG7-214ENST00000508461 RAB3GAP2Q9H2M9 1393 aa18.19■□□□□ 0.5
SMG7-214ENST00000508461 CLSPNQ9HAW4 1339 aa18.19■□□□□ 0.5
SMG7-214ENST00000508461 RRP7BPQ9NSQ0 103 aa18.17■□□□□ 0.5
SMG7-214ENST00000508461 CADPSQ9ULU8 1353 aa18.17■□□□□ 0.5
SMG7-214ENST00000508461 ZNF326Q5BKZ1 582 aaKnown RBP18.15■□□□□ 0.5
SMG7-214ENST00000508461 NCAPD3P42695 1498 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms