RNA–Protein interactions for RNA: ENST00000426431.2

SP1-202, Transcript of Sp1 transcription factor, humanhuman

TSL 1 (best) BASIC

Gene SP1, Length 7,603 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP1-202ENST00000426431 NISCHQ9Y2I1 1504 aa17.83■□□□□ 0.44
SP1-202ENST00000426431 DCAF8L2P0C7V8 631 aa17.72■□□□□ 0.43
SP1-202ENST00000426431 SUPT5HO00267 1087 aaKnown RBP16.62■□□□□ 0.25
SP1-202ENST00000426431 SHROOM4Q9ULL8 1493 aa16.39■□□□□ 0.21
SP1-202ENST00000426431 FAM9AQ8IZU1 332 aaPredicted RBP16.3■□□□□ 0.2
SP1-202ENST00000426431 APLP2Q06481 763 aa16.12■□□□□ 0.17
SP1-202ENST00000426431 PELP1Q8IZL8 1130 aaKnown RBP15.71■□□□□ 0.11
SP1-202ENST00000426431 TRIM41Q8WV44 630 aa15.67■□□□□ 0.1
SP1-202ENST00000426431 EHMT2Q96KQ7 1210 aa15.65■□□□□ 0.1
SP1-202ENST00000426431 ZEB1P37275 1124 aaPredicted RBP15.47■□□□□ 0.07
SP1-202ENST00000426431 UBTFP17480 764 aaKnown RBP15.44■□□□□ 0.06
SP1-202ENST00000426431 ATP1B4Q9UN42 357 aaPredicted RBP15.33■□□□□ 0.05
SP1-202ENST00000426431 RANGAP1P46060 587 aaPredicted RBP15.24■□□□□ 0.03
SP1-202ENST00000426431 ABCC9O60706 1549 aa15.23■□□□□ 0.03
SP1-202ENST00000426431 PCGF6Q9BYE7 350 aa15.18■□□□□ 0.02
SP1-202ENST00000426431 CCER1Q8TC90 406 aaPredicted RBP15.17■□□□□ 0.02
SP1-202ENST00000426431 TTBK1Q5TCY1 1321 aaPredicted RBP15.14■□□□□ 0.01
SP1-202ENST00000426431 CENPBP07199 599 aaPredicted RBP15.09■□□□□ 0.01
SP1-202ENST00000426431 CCDC180Q9P1Z9 1646 aa15.01□□□□□ -0.01
SP1-202ENST00000426431 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.98□□□□□ -0.01
SP1-202ENST00000426431 HNRNPUL2Q1KMD3 747 aaKnown RBP14.98□□□□□ -0.01
SP1-202ENST00000426431 TRIM26Q12899 539 aaPredicted RBP14.94□□□□□ -0.02
SP1-202ENST00000426431 MYT1LQ9UL68 1186 aa14.92□□□□□ -0.02
SP1-202ENST00000426431 PABPN1Q86U42 306 aaKnown RBP eCLIP14.91□□□□□ -0.02
SP1-202ENST00000426431 CHIC1Q5VXU3 224 aa14.88□□□□□ -0.03
SP1-202ENST00000426431 NEFLP07196 543 aa14.85□□□□□ -0.03
SP1-202ENST00000426431 ZCCHC6Q5VYS8 1495 aaKnown RBP14.76□□□□□ -0.05
SP1-202ENST00000426431 ERICH6Q7L0X2 663 aa14.71□□□□□ -0.05
SP1-202ENST00000426431 RB1CC1Q8TDY2 1594 aa14.67□□□□□ -0.06
SP1-202ENST00000426431 SCRIBQ14160 1630 aa14.66□□□□□ -0.06
SP1-202ENST00000426431 ITGAEP38570 1179 aa14.65□□□□□ -0.06
SP1-202ENST00000426431 NACADO15069 1562 aa14.57□□□□□ -0.08
SP1-202ENST00000426431 PPARGC1BQ86YN6 1023 aaKnown RBP14.57□□□□□ -0.08
SP1-202ENST00000426431 LOC105371045A0A1W2PR82 267 aa14.56□□□□□ -0.08
SP1-202ENST00000426431 CDK11AQ9UQ88 783 aaPredicted RBP14.55□□□□□ -0.08
SP1-202ENST00000426431 FAM50AQ14320 339 aaKnown RBP14.53□□□□□ -0.08
SP1-202ENST00000426431 FBLN2P98095 1184 aa14.5□□□□□ -0.09
SP1-202ENST00000426431 CSRNP3Q8WYN3 585 aa14.49□□□□□ -0.09
SP1-202ENST00000426431 POLR3GLQ9BT43 218 aa14.46□□□□□ -0.1
SP1-202ENST00000426431 TRIM52Q96A61 297 aa14.45□□□□□ -0.1
SP1-202ENST00000426431 HRCP23327 699 aa14.44□□□□□ -0.1
SP1-202ENST00000426431 YTHDC1Q96MU7 727 aaKnown RBP14.37□□□□□ -0.11
SP1-202ENST00000426431 DAXXQ9UER7 740 aaPredicted RBP14.36□□□□□ -0.11
SP1-202ENST00000426431 DCAF1Q9Y4B6 1507 aa14.35□□□□□ -0.11
SP1-202ENST00000426431 NPM1P06748 294 aaKnown RBP eCLIP14.35□□□□□ -0.11
SP1-202ENST00000426431 SLC4A1APQ9BWU0 796 aaKnown RBP14.35□□□□□ -0.11
SP1-202ENST00000426431 ACIN1Q9UKV3 1341 aaKnown RBP14.3□□□□□ -0.12
SP1-202ENST00000426431 EEA1Q15075 1411 aa14.28□□□□□ -0.12
SP1-202ENST00000426431 MYT1Q01538 1121 aa14.26□□□□□ -0.13
SP1-202ENST00000426431 ESF1Q9H501 851 aaKnown RBP14.26□□□□□ -0.13
SP1-202ENST00000426431 BAZ1BQ9UIG0 1483 aaKnown RBP14.2□□□□□ -0.14
SP1-202ENST00000426431 NEFMP07197 916 aa14.19□□□□□ -0.14
SP1-202ENST00000426431 ANP32CO43423 234 aa14.18□□□□□ -0.14
SP1-202ENST00000426431 NEUROD1Q13562 356 aa14.17□□□□□ -0.14
SP1-202ENST00000426431 DIEXFQ68CQ4 756 aaKnown RBP14.17□□□□□ -0.14
SP1-202ENST00000426431 BAZ1AQ9NRL2 1556 aaPredicted RBP14.17□□□□□ -0.14
SP1-202ENST00000426431 P3H3Q8IVL6 736 aa14.16□□□□□ -0.14
SP1-202ENST00000426431 CHMP7Q8WUX9 453 aaPredicted RBP14.15□□□□□ -0.14
SP1-202ENST00000426431 ZNF777Q9ULD5 760 aaPredicted RBP14.13□□□□□ -0.15
SP1-202ENST00000426431 BCANQ96GW7 911 aa14.11□□□□□ -0.15
SP1-202ENST00000426431 ZNF326Q5BKZ1 582 aaKnown RBP14.1□□□□□ -0.15
SP1-202ENST00000426431 RSF1Q96T23 1441 aaPredicted RBP14.09□□□□□ -0.15
SP1-202ENST00000426431 ZBTB47Q9UFB7 747 aaPredicted RBP14.09□□□□□ -0.15
SP1-202ENST00000426431 TSPY4P0CV99 314 aa14.06□□□□□ -0.16
SP1-202ENST00000426431 TSPY10P0CW01 314 aa14.06□□□□□ -0.16
SP1-202ENST00000426431 CLSPNQ9HAW4 1339 aa14.06□□□□□ -0.16
SP1-202ENST00000426431 MYO15BQ96JP2 1530 aa14.05□□□□□ -0.16
SP1-202ENST00000426431 KIF27Q86VH2 1401 aa14.05□□□□□ -0.16
SP1-202ENST00000426431 MTUS2Q5JR59 1369 aa14.05□□□□□ -0.16
SP1-202ENST00000426431 STAG3Q9UJ98 1225 aa14.04□□□□□ -0.16
SP1-202ENST00000426431 CNGB1Q14028 1251 aaPredicted RBP14.04□□□□□ -0.16
SP1-202ENST00000426431 TONSLQ96HA7 1378 aa14.03□□□□□ -0.16
SP1-202ENST00000426431 WRNQ14191 1432 aaPredicted RBP eCLIP14.03□□□□□ -0.163e-7■■■■□ 25.1
SP1-202ENST00000426431 GOLGA3Q08378 1498 aa14.03□□□□□ -0.16
SP1-202ENST00000426431 ZNF316A6NFI3 1004 aaPredicted RBP14.02□□□□□ -0.17
SP1-202ENST00000426431 ARID3CA6NKF2 412 aa14□□□□□ -0.17
SP1-202ENST00000426431 CLIP1P30622 1438 aa14□□□□□ -0.17
SP1-202ENST00000426431 ERCC6Q03468 1493 aa13.99□□□□□ -0.17
SP1-202ENST00000426431 SMARCA2P51531 1590 aa13.97□□□□□ -0.17
SP1-202ENST00000426431 PLEKHD1A6NEE1 506 aa13.95□□□□□ -0.18
SP1-202ENST00000426431 CEP164Q9UPV0 1460 aa13.95□□□□□ -0.18
SP1-202ENST00000426431 CANXP27824 592 aaKnown RBP13.91□□□□□ -0.18
SP1-202ENST00000426431 CHGAP10645 457 aaKnown RBP13.88□□□□□ -0.19
SP1-202ENST00000426431 RTL5Q5HYW3 569 aaPredicted RBP13.87□□□□□ -0.19
SP1-202ENST00000426431 PDS5BQ9NTI5 1447 aa13.86□□□□□ -0.19
SP1-202ENST00000426431 TNIKQ9UKE5 1360 aa13.85□□□□□ -0.19
SP1-202ENST00000426431 FHAD1B1AJZ9 1412 aa13.85□□□□□ -0.19
SP1-202ENST00000426431 SLC24A1O60721 1099 aa13.8□□□□□ -0.2
SP1-202ENST00000426431 CEP162Q5TB80 1403 aa13.8□□□□□ -0.2
SP1-202ENST00000426431 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.78□□□□□ -0.2
SP1-202ENST00000426431 CDCA8Q53HL2 280 aa13.76□□□□□ -0.21
SP1-202ENST00000426431 CFDP1Q9UEE9 299 aaPredicted RBP13.76□□□□□ -0.21
SP1-202ENST00000426431 CHIC2Q9UKJ5 165 aa13.75□□□□□ -0.21
SP1-202ENST00000426431 CARMIL2Q6F5E8 1435 aa13.72□□□□□ -0.21
SP1-202ENST00000426431 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.72□□□□□ -0.21
SP1-202ENST00000426431 CARMIL1Q5VZK9 1371 aa13.71□□□□□ -0.21
SP1-202ENST00000426431 PPP1R15AO75807 674 aaPredicted RBP13.71□□□□□ -0.22
SP1-202ENST00000426431 CECR2Q9BXF3 1484 aa13.71□□□□□ -0.22
SP1-202ENST00000426431 KCNH8Q96L42 1107 aa13.7□□□□□ -0.22
SP1-202ENST00000426431 CUX2O14529 1486 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms