RNA–Protein interactions for RNA: ENST00000571457.1

CHMP6-202, Transcript of charged multivesicular body protein 6, humanhuman

TSL 3

Gene CHMP6, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP6-202ENST00000571457 NISCHQ9Y2I1 1504 aa28.89■■■□□ 2.21
CHMP6-202ENST00000571457 ABCC9O60706 1549 aa26.48■■□□□ 1.83
CHMP6-202ENST00000571457 CCDC180Q9P1Z9 1646 aa26.11■■□□□ 1.77
CHMP6-202ENST00000571457 DNAJC5BQ9UF47 199 aa25.17■■□□□ 1.62
CHMP6-202ENST00000571457 RB1CC1Q8TDY2 1594 aa25.07■■□□□ 1.6
CHMP6-202ENST00000571457 NACADO15069 1562 aa24.8■■□□□ 1.56
CHMP6-202ENST00000571457 DCAF8L2P0C7V8 631 aa24.59■■□□□ 1.53
CHMP6-202ENST00000571457 PABPN1Q86U42 306 aaKnown RBP eCLIP24.59■■□□□ 1.53
CHMP6-202ENST00000571457 UNC13AQ9UPW8 1703 aa24.41■■□□□ 1.5
CHMP6-202ENST00000571457 MYO15BQ96JP2 1530 aa24.35■■□□□ 1.49
CHMP6-202ENST00000571457 BICRAQ9NZM4 1560 aa24.29■■□□□ 1.48
CHMP6-202ENST00000571457 SHROOM4Q9ULL8 1493 aa24.03■■□□□ 1.44
CHMP6-202ENST00000571457 CECR2Q9BXF3 1484 aa23.93■■□□□ 1.42
CHMP6-202ENST00000571457 CC2D2AQ9P2K1 1620 aa23.9■■□□□ 1.42
CHMP6-202ENST00000571457 DCAF1Q9Y4B6 1507 aa23.87■■□□□ 1.41
CHMP6-202ENST00000571457 ZCCHC6Q5VYS8 1495 aaKnown RBP23.85■■□□□ 1.41
CHMP6-202ENST00000571457 EIF4G1Q04637 1599 aaKnown RBP23.76■■□□□ 1.39
CHMP6-202ENST00000571457 SCRIBQ14160 1630 aa23.73■■□□□ 1.39
CHMP6-202ENST00000571457 DNAJC5Q9H3Z4 198 aa23.5■■□□□ 1.35
CHMP6-202ENST00000571457 CUX2O14529 1486 aa23.05■■□□□ 1.28
CHMP6-202ENST00000571457 ERCC6Q03468 1493 aa22.95■■□□□ 1.26
CHMP6-202ENST00000571457 NCAPD3P42695 1498 aa22.9■■□□□ 1.26
CHMP6-202ENST00000571457 ATAD2BQ9ULI0 1458 aa22.75■■□□□ 1.23
CHMP6-202ENST00000571457 SMARCA2P51531 1590 aa22.7■■□□□ 1.22
CHMP6-202ENST00000571457 HMGXB3Q12766 1538 aa22.68■■□□□ 1.22
CHMP6-202ENST00000571457 NESP48681 1621 aa22.6■■□□□ 1.21
CHMP6-202ENST00000571457 SMARCA4P51532 1647 aa22.6■■□□□ 1.21
CHMP6-202ENST00000571457 BAZ1BQ9UIG0 1483 aaKnown RBP22.53■■□□□ 1.2
CHMP6-202ENST00000571457 BAZ1AQ9NRL2 1556 aaPredicted RBP22.48■■□□□ 1.19
CHMP6-202ENST00000571457 THOC2Q8NI27 1593 aaKnown RBP22.46■■□□□ 1.19
CHMP6-202ENST00000571457 LAMC3Q9Y6N6 1575 aa22.45■■□□□ 1.18
CHMP6-202ENST00000571457 PEG3Q9GZU2 1588 aa22.42■■□□□ 1.18
CHMP6-202ENST00000571457 PDS5BQ9NTI5 1447 aa22.37■■□□□ 1.17
CHMP6-202ENST00000571457 KIF21AQ7Z4S6 1674 aa22.3■■□□□ 1.16
CHMP6-202ENST00000571457 TRIM41Q8WV44 630 aa22.28■■□□□ 1.16
CHMP6-202ENST00000571457 MROH2BQ7Z745 1585 aa22.22■■□□□ 1.15
CHMP6-202ENST00000571457 CADPSQ9ULU8 1353 aa22.19■■□□□ 1.14
CHMP6-202ENST00000571457 MRC2Q9UBG0 1479 aa22.16■■□□□ 1.14
CHMP6-202ENST00000571457 WDR62O43379 1518 aa22.1■■□□□ 1.13
CHMP6-202ENST00000571457 CEP164Q9UPV0 1460 aa22■■□□□ 1.11
CHMP6-202ENST00000571457 OSCARQ8IYS5 282 aa21.96■■□□□ 1.11
CHMP6-202ENST00000571457 WIZO95785 1651 aa21.92■■□□□ 1.1
CHMP6-202ENST00000571457 FANCD2Q9BXW9 1451 aa21.92■■□□□ 1.1
CHMP6-202ENST00000571457 CFTRP13569 1480 aa21.84■■□□□ 1.09
CHMP6-202ENST00000571457 URB2Q14146 1524 aaKnown RBP21.74■■□□□ 1.07
CHMP6-202ENST00000571457 TOP2AP11388 1531 aaKnown RBP21.66■■□□□ 1.06
CHMP6-202ENST00000571457 RSF1Q96T23 1441 aaPredicted RBP21.64■■□□□ 1.06
CHMP6-202ENST00000571457 RIMBP3CA6NJZ7 1639 aa21.63■■□□□ 1.05
CHMP6-202ENST00000571457 RIMBP3BA6NNM3 1639 aa21.63■■□□□ 1.05
CHMP6-202ENST00000571457 RIMBP3Q9UFD9 1639 aa21.63■■□□□ 1.05
CHMP6-202ENST00000571457 IFT140Q96RY7 1462 aa21.58■■□□□ 1.05
CHMP6-202ENST00000571457 PRDM2Q13029 1718 aa21.55■■□□□ 1.04
CHMP6-202ENST00000571457 ARHGEF11O15085 1522 aa21.55■■□□□ 1.04
CHMP6-202ENST00000571457 ZNF608Q9ULD9 1512 aaPredicted RBP21.53■■□□□ 1.04
CHMP6-202ENST00000571457 TOPBP1Q92547 1522 aa21.45■■□□□ 1.02
CHMP6-202ENST00000571457 ABCC8Q09428 1581 aa21.44■■□□□ 1.02
CHMP6-202ENST00000571457 CYB5RLQ6IPT4 315 aa21.44■■□□□ 1.02
CHMP6-202ENST00000571457 CCDC88BA6NC98 1476 aa21.41■■□□□ 1.02
CHMP6-202ENST00000571457 EIF4G3O43432 1585 aaKnown RBP21.4■■□□□ 1.02
CHMP6-202ENST00000571457 TRHP20396 242 aaPredicted RBP21.36■■□□□ 1.01
CHMP6-202ENST00000571457 DNMBPQ6XZF7 1577 aa21.34■■□□□ 1.01
CHMP6-202ENST00000571457 CHD1O14646 1710 aa21.3■■□□□ 1
CHMP6-202ENST00000571457 AQRO60306 1485 aaKnown RBP eCLIP21.3■■□□□ 15e-10■■■■■ 50.7
CHMP6-202ENST00000571457 ARAP1Q96P48 1450 aa21.29■■□□□ 1
CHMP6-202ENST00000571457 FBLN2P98095 1184 aa21.29■■□□□ 1
CHMP6-202ENST00000571457 TARBP1Q13395 1621 aaKnown RBP21.27■■□□□ 1
CHMP6-202ENST00000571457 POLA1P09884 1462 aaPredicted RBP21.2■□□□□ 0.98
CHMP6-202ENST00000571457 SOGA1O94964 1423 aa21.12■□□□□ 0.97
CHMP6-202ENST00000571457 TDRD9Q8NDG6 1382 aaKnown RBP21.12■□□□□ 0.97
CHMP6-202ENST00000571457 RAD54L2Q9Y4B4 1467 aa21.11■□□□□ 0.97
CHMP6-202ENST00000571457 WDR97A6NE52 1622 aa21.09■□□□□ 0.97
CHMP6-202ENST00000571457 CHMP7Q8WUX9 453 aaPredicted RBP21.09■□□□□ 0.97
CHMP6-202ENST00000571457 SNAPC4Q5SXM2 1469 aa21.07■□□□□ 0.96
CHMP6-202ENST00000571457 AEBP2Q6ZN18 517 aaPredicted RBP21.07■□□□□ 0.96
CHMP6-202ENST00000571457 CLASP1Q7Z460 1538 aa21.07■□□□□ 0.96
CHMP6-202ENST00000571457 SYNJ1O43426 1573 aa21.06■□□□□ 0.96
CHMP6-202ENST00000571457 MAGI1Q96QZ7 1491 aaPredicted RBP21.04■□□□□ 0.96
CHMP6-202ENST00000571457 FGD5Q6ZNL6 1462 aa21.01■□□□□ 0.95
CHMP6-202ENST00000571457 GRIN2BQ13224 1484 aa21■□□□□ 0.95
CHMP6-202ENST00000571457 SYNJ2O15056 1496 aa20.97■□□□□ 0.95
CHMP6-202ENST00000571457 CUX1P39880 1505 aa20.9■□□□□ 0.94
CHMP6-202ENST00000571457 GAPVD1Q14C86 1478 aa20.9■□□□□ 0.94
CHMP6-202ENST00000571457 PBRM1Q86U86 1689 aa20.83■□□□□ 0.92
CHMP6-202ENST00000571457 ABCA10Q8WWZ4 1543 aa20.77■□□□□ 0.92
CHMP6-202ENST00000571457 ABCA5Q8WWZ7 1642 aa20.74■□□□□ 0.91
CHMP6-202ENST00000571457 GRIN2AQ12879 1464 aa20.71■□□□□ 0.91
CHMP6-202ENST00000571457 ERCC6L2Q5T890 1561 aa20.67■□□□□ 0.9
CHMP6-202ENST00000571457 CEP170Q5SW79 1584 aa20.65■□□□□ 0.9
CHMP6-202ENST00000571457 NUP160Q12769 1436 aa20.65■□□□□ 0.9
CHMP6-202ENST00000571457 WRNQ14191 1432 aaPredicted RBP eCLIP20.64■□□□□ 0.89
CHMP6-202ENST00000571457 ADAMTS12P58397 1594 aa20.62■□□□□ 0.89
CHMP6-202ENST00000571457 FHAD1B1AJZ9 1412 aa20.6■□□□□ 0.89
CHMP6-202ENST00000571457 SHROOM2Q13796 1616 aa20.59■□□□□ 0.89
CHMP6-202ENST00000571457 KIF13AQ9H1H9 1805 aa20.52■□□□□ 0.88
CHMP6-202ENST00000571457 ERICH3Q5RHP9 1530 aa20.51■□□□□ 0.87
CHMP6-202ENST00000571457 PRG4Q92954 1404 aaPredicted RBP20.5■□□□□ 0.87
CHMP6-202ENST00000571457 TOP2BQ02880 1626 aa20.49■□□□□ 0.87
CHMP6-202ENST00000571457 BIVM-ERCC5R4GMW8 1640 aa20.47■□□□□ 0.87
CHMP6-202ENST00000571457 JPH4Q96JJ6 628 aa20.47■□□□□ 0.87
CHMP6-202ENST00000571457 NPM1P06748 294 aaKnown RBP eCLIP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms