Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RPH3AL-206ENST00000570954 568 ntTSL 415.1■□□□□ 0.016e-8■■■□□ 16.6
YBX3P16989 CNOT1-207ENST00000565605 739 ntTSL 413.05□□□□□ -0.325e-11■■■□□ 16.6
YBX3P16989 RIC8A-204ENST00000526557 670 ntTSL 218.74■□□□□ 0.594e-23■■■□□ 16.6
YBX3P16989 RIC8A-211ENST00000529275 440 ntTSL 212.91□□□□□ -0.344e-23■■■□□ 16.6
YBX3P16989 MARS-206ENST00000546971 711 ntTSL 222.73■■□□□ 1.237e-8■■■□□ 16.6
YBX3P16989 ATG9A-215ENST00000446716 5245 ntTSL 218.34■□□□□ 0.535e-6■■■□□ 16.6
YBX3P16989 AL627309.7-201ENST00000494149 755 ntBASIC13.99□□□□□ -0.171e-20■■■□□ 16.6
YBX3P16989 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.474e-6■■■□□ 16.6
YBX3P16989 SCNM1-205ENST00000471039 618 ntTSL 215.87■□□□□ 0.131e-8■■■□□ 16.6
YBX3P16989 SCNM1-207ENST00000602841 749 ntTSL 313.99□□□□□ -0.171e-8■■■□□ 16.6
YBX3P16989 SCNM1-206ENST00000497147 862 ntTSL 213.95□□□□□ -0.181e-8■■■□□ 16.6
YBX3P16989 SCNM1-204ENST00000461862 1094 ntTSL 212.41□□□□□ -0.421e-8■■■□□ 16.6
YBX3P16989 SCNM1-201ENST00000368902 869 ntTSL 2 BASIC11.93□□□□□ -0.51e-8■■■□□ 16.6
YBX3P16989 SCNM1-202ENST00000368905 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.781e-8■■■□□ 16.6
YBX3P16989 HAUS6-202ENST00000380502 6536 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.413e-6■■■□□ 16.6
YBX3P16989 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.917e-7■■■□□ 16.6
YBX3P16989 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.9■□□□□ 0.787e-7■■■□□ 16.6
YBX3P16989 TUBA4A-203ENST00000398989 615 ntTSL 318.22■□□□□ 0.517e-7■■■□□ 16.6
YBX3P16989 TUBA4A-210ENST00000498660 790 ntTSL 310.97□□□□□ -0.657e-7■■■□□ 16.6
YBX3P16989 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.258e-7■■■□□ 16.6
YBX3P16989 NFATC3-209ENST00000561714 792 ntTSL 332.13■■■□□ 2.732e-7■■■□□ 16.6
YBX3P16989 NFATC3-219ENST00000568466 737 ntTSL 229.7■■■□□ 2.352e-7■■■□□ 16.6
YBX3P16989 NFATC3-217ENST00000566893 715 ntTSL 215.04■□□□□ -02e-7■■■□□ 16.6
YBX3P16989 PYGO2-203ENST00000483463 594 ntTSL 26.66□□□□□ -1.341e-6■■■□□ 16.6
YBX3P16989 HECTD1-212ENST00000556004 595 ntTSL 212.38□□□□□ -0.433e-9■■■□□ 16.6
YBX3P16989 HECTD1-211ENST00000555915 775 ntTSL 510.85□□□□□ -0.673e-9■■■□□ 16.6
YBX3P16989 USP20-202ENST00000358355 4371 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.221e-7■■■□□ 16.6
YBX3P16989 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.271e-7■■■□□ 16.6
YBX3P16989 USP20-203ENST00000372429 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.381e-7■■■□□ 16.6
YBX3P16989 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.914e-8■■■□□ 16.6
YBX3P16989 HOXB7-203ENST00000567101 528 ntTSL 215.01□□□□□ -0.014e-8■■■□□ 16.6
YBX3P16989 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.52e-6■■■□□ 16.6
YBX3P16989 PTPN12-203ENST00000415482 2316 ntTSL 5 BASIC11.73□□□□□ -0.532e-6■■■□□ 16.6
YBX3P16989 PTPN12-202ENST00000407343 704 ntTSL 38.98□□□□□ -0.972e-6■■■□□ 16.6
YBX3P16989 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.98□□□□□ -1.612e-6■■■□□ 16.6
YBX3P16989 BCOR-208ENST00000413905 1945 ntTSL 514.92□□□□□ -0.022e-7■■■□□ 16.6
YBX3P16989 BCOR-204ENST00000378463 2230 ntTSL 5 BASIC12.1□□□□□ -0.472e-7■■■□□ 16.6
YBX3P16989 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.22e-6■■■□□ 16.6
YBX3P16989 TUFM-204ENST00000569217 814 ntTSL 222.83■■□□□ 1.251e-16■■■□□ 16.6
YBX3P16989 UBE3A-208ENST00000625681 654 ntTSL 531.88■■■□□ 2.693e-7■■■□□ 16.6
YBX3P16989 UBE3A-218ENST00000629252 1112 ntTSL 528.26■■■□□ 2.113e-7■■■□□ 16.6
YBX3P16989 UBE3A-215ENST00000628267 779 ntTSL 527.98■■■□□ 2.073e-7■■■□□ 16.6
YBX3P16989 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.66■□□□□ 0.584e-7■■■□□ 16.6
YBX3P16989 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.284e-15■■■□□ 16.6
YBX3P16989 TUBA1B-201ENST00000332858 3198 ntTSL 1 (best)13.72□□□□□ -0.214e-15■■■□□ 16.6
YBX3P16989 TUBA1B-204ENST00000547765 1875 ntTSL 513.62□□□□□ -0.234e-15■■■□□ 16.6
YBX3P16989 QARS-228ENST00000634432 582 ntTSL 312.36□□□□□ -0.431e-9■■■□□ 16.6
YBX3P16989 CYTOR-205ENST00000413202 422 ntTSL 1 (best)18.23■□□□□ 0.518e-13■■■□□ 16.6
YBX3P16989 CYTOR-210ENST00000437561 455 ntTSL 214.43□□□□□ -0.18e-13■■■□□ 16.6
YBX3P16989 CYTOR-214ENST00000629257 323 ntTSL 59.18□□□□□ -0.948e-13■■■□□ 16.6
YBX3P16989 PRPF8-203ENST00000571958 380 ntTSL 314.06□□□□□ -0.167e-9■■■□□ 16.6
YBX3P16989 LONP1-208ENST00000589473 793 ntTSL 320.61■□□□□ 0.892e-12■■■□□ 16.6
YBX3P16989 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.273e-6■■■□□ 16.6
YBX3P16989 C16orf72-202ENST00000574285 10359 ntTSL 24.89□□□□□ -1.633e-6■■■□□ 16.6
YBX3P16989 TSPAN14-201ENST00000265450 2588 ntTSL 218.75■□□□□ 0.592e-9■■■□□ 16.6
YBX3P16989 ALAS2-208ENST00000498636 959 ntTSL 316.55■□□□□ 0.241e-13■■■□□ 16.6
YBX3P16989 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC25.84■■□□□ 1.739e-12■■■□□ 16.6
YBX3P16989 H3F3A-203ENST00000366815 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.019e-12■■■□□ 16.6
YBX3P16989 H3F3A-202ENST00000366814 1863 ntTSL 2 BASIC13.23□□□□□ -0.299e-12■■■□□ 16.6
YBX3P16989 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.679e-12■■■□□ 16.6
YBX3P16989 CLPP-202ENST00000594780 1007 ntTSL 217.56■□□□□ 0.43e-7■■■□□ 16.6
YBX3P16989 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.811e-6■■■□□ 16.6
YBX3P16989 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC20.57■□□□□ 0.882e-8■■■□□ 16.6
YBX3P16989 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.012e-7■■■□□ 16.6
YBX3P16989 YBX3-215ENST00000544504 583 ntTSL 312.55□□□□□ -0.43e-11■■■□□ 16.5
YBX3P16989 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.472e-6■■■□□ 16.5
YBX3P16989 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.092e-6■■■□□ 16.5
YBX3P16989 UBR3-205ENST00000439681 2183 ntTSL 29.13□□□□□ -0.952e-6■■■□□ 16.5
YBX3P16989 UBR3-204ENST00000430321 5411 ntTSL 56□□□□□ -1.452e-6■■■□□ 16.5
YBX3P16989 UBR3-202ENST00000392632 5129 ntTSL 54.03□□□□□ -1.762e-6■■■□□ 16.5
YBX3P16989 TIMM50-208ENST00000597552 369 ntTSL 213.73□□□□□ -0.214e-6■■■□□ 16.5
YBX3P16989 MCM4-209ENST00000520637 839 ntTSL 215.07■□□□□ 02e-9■■■□□ 16.5
YBX3P16989 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.482e-6■■■□□ 16.5
YBX3P16989 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC8.98□□□□□ -0.972e-6■■■□□ 16.5
YBX3P16989 IFI30-203ENST00000600463 2116 ntTSL 214.98□□□□□ -0.012e-6■■■□□ 16.5
YBX3P16989 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC7.49□□□□□ -1.213e-10■■■□□ 16.5
YBX3P16989 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.53e-10■■■□□ 16.5
YBX3P16989 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.474e-6■■■□□ 16.5
YBX3P16989 PSMG2-207ENST00000586587 711 ntTSL 314.69□□□□□ -0.064e-6■■■□□ 16.5
YBX3P16989 PSMG2-210ENST00000590217 1036 ntTSL 1 (best) BASIC12.58□□□□□ -0.44e-6■■■□□ 16.5
YBX3P16989 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC8.95□□□□□ -0.984e-6■■■□□ 16.5
YBX3P16989 PSMG2-206ENST00000586445 646 ntTSL 57.54□□□□□ -1.24e-6■■■□□ 16.5
YBX3P16989 HADHA-204ENST00000492433 752 ntTSL 213.85□□□□□ -0.195e-15■■■□□ 16.5
YBX3P16989 PRPF19-202ENST00000535326 779 ntTSL 514.66□□□□□ -0.065e-7■■■□□ 16.5
YBX3P16989 PRPF19-205ENST00000540473 169 ntTSL 59.16□□□□□ -0.945e-7■■■□□ 16.5
YBX3P16989 EIF3L-210ENST00000464790 583 ntTSL 313.52□□□□□ -0.253e-13■■■□□ 16.5
YBX3P16989 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.851e-8■■■□□ 16.5
YBX3P16989 EIF3L-205ENST00000436452 574 ntTSL 46.6□□□□□ -1.359e-11■■■□□ 16.5
YBX3P16989 MRPL9-205ENST00000467306 1264 ntTSL 230.87■■■□□ 2.536e-7■■■□□ 16.5
YBX3P16989 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.926e-7■■■□□ 16.5
YBX3P16989 EIF1-202ENST00000462917 2170 ntTSL 1 (best)20.63■□□□□ 0.891e-21■■■□□ 16.5
YBX3P16989 EIF1-201ENST00000310837 1120 ntTSL 1 (best)11.82□□□□□ -0.521e-21■■■□□ 16.5
YBX3P16989 EIF1-205ENST00000482111 1428 ntTSL 28.88□□□□□ -0.991e-21■■■□□ 16.5
YBX3P16989 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.071e-21■■■□□ 16.5
YBX3P16989 NCSTN-203ENST00000421914 776 ntTSL 419.77■□□□□ 0.762e-7■■■□□ 16.5
YBX3P16989 EPHB4-205ENST00000478459 965 ntTSL 225.47■■□□□ 1.672e-8■■■□□ 16.5
YBX3P16989 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.12e-7■■■□□ 16.5
YBX3P16989 CLPP-203ENST00000596070 1346 ntTSL 521.75■■□□□ 1.072e-7■■■□□ 16.5
YBX3P16989 AC136632.1-201ENST00000477964 591 ntBASIC14.89□□□□□ -0.031e-7■■■□□ 16.5
YBX3P16989 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.471e-6■■■□□ 16.5
Retrieved 100 of 29,075 protein–RNA pairs in 363.9 ms