RNA–Protein interactions for RNA: ENST00000471039.1

SCNM1-205, Transcript of sodium channel modifier 1, humanhuman

TSL 2

Gene SCNM1, Length 618 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCNM1-205ENST00000471039 NISCHQ9Y2I1 1504 aa30.24■■■□□ 2.43
SCNM1-205ENST00000471039 CCDC180Q9P1Z9 1646 aa27.01■■□□□ 1.92
SCNM1-205ENST00000471039 ABCC9O60706 1549 aa26.12■■□□□ 1.77
SCNM1-205ENST00000471039 ZCCHC6Q5VYS8 1495 aaKnown RBP25.28■■□□□ 1.64
SCNM1-205ENST00000471039 RB1CC1Q8TDY2 1594 aa25.26■■□□□ 1.63
SCNM1-205ENST00000471039 NACADO15069 1562 aa25.23■■□□□ 1.63
SCNM1-205ENST00000471039 MYO15BQ96JP2 1530 aa25.12■■□□□ 1.61
SCNM1-205ENST00000471039 DCAF1Q9Y4B6 1507 aa25.07■■□□□ 1.6
SCNM1-205ENST00000471039 DCAF8L2P0C7V8 631 aa24.95■■□□□ 1.58
SCNM1-205ENST00000471039 UNC13AQ9UPW8 1703 aa24.87■■□□□ 1.57
SCNM1-205ENST00000471039 SCRIBQ14160 1630 aa24.58■■□□□ 1.53
SCNM1-205ENST00000471039 BICRAQ9NZM4 1560 aa24.52■■□□□ 1.52
SCNM1-205ENST00000471039 PABPN1Q86U42 306 aaKnown RBP eCLIP24.29■■□□□ 1.48
SCNM1-205ENST00000471039 SHROOM4Q9ULL8 1493 aa24.26■■□□□ 1.47
SCNM1-205ENST00000471039 EIF4G1Q04637 1599 aaKnown RBP23.84■■□□□ 1.41
SCNM1-205ENST00000471039 DNAJC5BQ9UF47 199 aa23.73■■□□□ 1.39
SCNM1-205ENST00000471039 CC2D2AQ9P2K1 1620 aa23.73■■□□□ 1.39
SCNM1-205ENST00000471039 SMARCA4P51532 1647 aa23.53■■□□□ 1.36
SCNM1-205ENST00000471039 CECR2Q9BXF3 1484 aa23.51■■□□□ 1.35
SCNM1-205ENST00000471039 BAZ1AQ9NRL2 1556 aaPredicted RBP23.47■■□□□ 1.35
SCNM1-205ENST00000471039 MROH2BQ7Z745 1585 aa23.31■■□□□ 1.32
SCNM1-205ENST00000471039 SMARCA2P51531 1590 aa23.29■■□□□ 1.32
SCNM1-205ENST00000471039 PEG3Q9GZU2 1588 aa23.29■■□□□ 1.32
SCNM1-205ENST00000471039 ATAD2BQ9ULI0 1458 aa23.26■■□□□ 1.31
SCNM1-205ENST00000471039 HMGXB3Q12766 1538 aa23.23■■□□□ 1.31
SCNM1-205ENST00000471039 NCAPD3P42695 1498 aa23.2■■□□□ 1.3
SCNM1-205ENST00000471039 WIZO95785 1651 aa23.14■■□□□ 1.29
SCNM1-205ENST00000471039 BAZ1BQ9UIG0 1483 aaKnown RBP23.1■■□□□ 1.29
SCNM1-205ENST00000471039 RSF1Q96T23 1441 aaPredicted RBP23.02■■□□□ 1.28
SCNM1-205ENST00000471039 TOP2AP11388 1531 aaKnown RBP22.88■■□□□ 1.25
SCNM1-205ENST00000471039 LAMC3Q9Y6N6 1575 aa22.68■■□□□ 1.22
SCNM1-205ENST00000471039 NESP48681 1621 aa22.66■■□□□ 1.22
SCNM1-205ENST00000471039 PRDM2Q13029 1718 aa22.57■■□□□ 1.2
SCNM1-205ENST00000471039 KIF21AQ7Z4S6 1674 aa22.55■■□□□ 1.2
SCNM1-205ENST00000471039 CCDC88BA6NC98 1476 aa22.51■■□□□ 1.19
SCNM1-205ENST00000471039 CADPSQ9ULU8 1353 aa22.5■■□□□ 1.19
SCNM1-205ENST00000471039 ERCC6Q03468 1493 aa22.49■■□□□ 1.19
SCNM1-205ENST00000471039 CFTRP13569 1480 aa22.45■■□□□ 1.18
SCNM1-205ENST00000471039 THOC2Q8NI27 1593 aaKnown RBP22.44■■□□□ 1.18
SCNM1-205ENST00000471039 PDS5BQ9NTI5 1447 aa22.4■■□□□ 1.18
SCNM1-205ENST00000471039 SUPT5HO00267 1087 aaKnown RBP22.38■■□□□ 1.17
SCNM1-205ENST00000471039 FANCD2Q9BXW9 1451 aa22.31■■□□□ 1.16
SCNM1-205ENST00000471039 CEP164Q9UPV0 1460 aa22.3■■□□□ 1.16
SCNM1-205ENST00000471039 CUX2O14529 1486 aa22.26■■□□□ 1.15
SCNM1-205ENST00000471039 MRC2Q9UBG0 1479 aa22.24■■□□□ 1.15
SCNM1-205ENST00000471039 WDR62O43379 1518 aa22.22■■□□□ 1.15
SCNM1-205ENST00000471039 URB2Q14146 1524 aaKnown RBP22.11■■□□□ 1.13
SCNM1-205ENST00000471039 DNMBPQ6XZF7 1577 aa22.03■■□□□ 1.12
SCNM1-205ENST00000471039 TOPBP1Q92547 1522 aa22■■□□□ 1.11
SCNM1-205ENST00000471039 ABCC8Q09428 1581 aa21.95■■□□□ 1.1
SCNM1-205ENST00000471039 CUX1P39880 1505 aa21.9■■□□□ 1.1
SCNM1-205ENST00000471039 BIVM-ERCC5R4GMW8 1640 aa21.83■■□□□ 1.08
SCNM1-205ENST00000471039 TARBP1Q13395 1621 aaKnown RBP21.81■■□□□ 1.08
SCNM1-205ENST00000471039 POLA1P09884 1462 aaPredicted RBP21.81■■□□□ 1.08
SCNM1-205ENST00000471039 IFT140Q96RY7 1462 aa21.79■■□□□ 1.08
SCNM1-205ENST00000471039 WDR97A6NE52 1622 aa21.78■■□□□ 1.08
SCNM1-205ENST00000471039 SYNJ1O43426 1573 aa21.78■■□□□ 1.08
SCNM1-205ENST00000471039 FGD5Q6ZNL6 1462 aa21.77■■□□□ 1.08
SCNM1-205ENST00000471039 TOP2BQ02880 1626 aa21.77■■□□□ 1.07
SCNM1-205ENST00000471039 EIF4G3O43432 1585 aaKnown RBP21.75■■□□□ 1.07
SCNM1-205ENST00000471039 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
SCNM1-205ENST00000471039 ZNF608Q9ULD9 1512 aaPredicted RBP21.7■■□□□ 1.06
SCNM1-205ENST00000471039 RAD54L2Q9Y4B4 1467 aa21.67■■□□□ 1.06
SCNM1-205ENST00000471039 SOGA1O94964 1423 aa21.62■■□□□ 1.05
SCNM1-205ENST00000471039 PBRM1Q86U86 1689 aa21.6■■□□□ 1.05
SCNM1-205ENST00000471039 ABCA5Q8WWZ7 1642 aa21.58■■□□□ 1.05
SCNM1-205ENST00000471039 ABCA10Q8WWZ4 1543 aa21.56■■□□□ 1.04
SCNM1-205ENST00000471039 AQRO60306 1485 aaKnown RBP eCLIP21.52■■□□□ 1.04
SCNM1-205ENST00000471039 CHD1O14646 1710 aa21.49■■□□□ 1.03
SCNM1-205ENST00000471039 TDRD9Q8NDG6 1382 aaKnown RBP21.47■■□□□ 1.03
SCNM1-205ENST00000471039 GAPVD1Q14C86 1478 aa21.44■■□□□ 1.02
SCNM1-205ENST00000471039 GRIN2BQ13224 1484 aa21.42■■□□□ 1.02
SCNM1-205ENST00000471039 SNAPC4Q5SXM2 1469 aa21.42■■□□□ 1.02
SCNM1-205ENST00000471039 MAGI1Q96QZ7 1491 aaPredicted RBP21.39■■□□□ 1.01
SCNM1-205ENST00000471039 ADAMTS12P58397 1594 aa21.36■■□□□ 1.01
SCNM1-205ENST00000471039 ERICH3Q5RHP9 1530 aa21.34■■□□□ 1.01
SCNM1-205ENST00000471039 SYNJ2O15056 1496 aa21.28■■□□□ 1
SCNM1-205ENST00000471039 DNAJC5Q9H3Z4 198 aa21.26■□□□□ 0.99
SCNM1-205ENST00000471039 CUL7Q14999 1698 aa21.24■□□□□ 0.99
SCNM1-205ENST00000471039 KIF27Q86VH2 1401 aa21.22■□□□□ 0.99
SCNM1-205ENST00000471039 CLASP1Q7Z460 1538 aa21.19■□□□□ 0.98
SCNM1-205ENST00000471039 FHAD1B1AJZ9 1412 aa21.18■□□□□ 0.98
SCNM1-205ENST00000471039 GRIN2AQ12879 1464 aa21.18■□□□□ 0.98
SCNM1-205ENST00000471039 OSCARQ8IYS5 282 aa21.16■□□□□ 0.98
SCNM1-205ENST00000471039 FBLN2P98095 1184 aa21.13■□□□□ 0.97
SCNM1-205ENST00000471039 CEP170Q5SW79 1584 aa21.13■□□□□ 0.97
SCNM1-205ENST00000471039 TRIM41Q8WV44 630 aa21.12■□□□□ 0.97
SCNM1-205ENST00000471039 CHMP7Q8WUX9 453 aaPredicted RBP21.1■□□□□ 0.97
SCNM1-205ENST00000471039 RUSC2Q8N2Y8 1516 aa21.09■□□□□ 0.97
SCNM1-205ENST00000471039 RIMBP3CA6NJZ7 1639 aa21.07■□□□□ 0.96
SCNM1-205ENST00000471039 RIMBP3BA6NNM3 1639 aa21.07■□□□□ 0.96
SCNM1-205ENST00000471039 RIMBP3Q9UFD9 1639 aa21.07■□□□□ 0.96
SCNM1-205ENST00000471039 NUP160Q12769 1436 aa21.07■□□□□ 0.96
SCNM1-205ENST00000471039 IGF1RP08069 1367 aa21.07■□□□□ 0.96
SCNM1-205ENST00000471039 ARHGEF11O15085 1522 aa21.03■□□□□ 0.96
SCNM1-205ENST00000471039 SHROOM2Q13796 1616 aa21.01■□□□□ 0.95
SCNM1-205ENST00000471039 CARMIL1Q5VZK9 1371 aa20.97■□□□□ 0.95
SCNM1-205ENST00000471039 CHIC1Q5VXU3 224 aa20.96■□□□□ 0.95
SCNM1-205ENST00000471039 CTTNBP2Q8WZ74 1663 aa20.94■□□□□ 0.94
SCNM1-205ENST00000471039 EEA1Q15075 1411 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 277.8 ms