RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 NISCHQ9Y2I1 1504 aa37.69■■■■□ 3.62
VAPA-201ENST00000340541 CCDC180Q9P1Z9 1646 aa33.72■■■□□ 2.99
VAPA-201ENST00000340541 ABCC9O60706 1549 aa33.64■■■□□ 2.98
VAPA-201ENST00000340541 RB1CC1Q8TDY2 1594 aa32.11■■■□□ 2.73
VAPA-201ENST00000340541 NACADO15069 1562 aa31.93■■■□□ 2.7
VAPA-201ENST00000340541 DCAF8L2P0C7V8 631 aa31.69■■■□□ 2.66
VAPA-201ENST00000340541 DNAJC5BQ9UF47 199 aa31.61■■■□□ 2.65
VAPA-201ENST00000340541 MYO15BQ96JP2 1530 aa31.55■■■□□ 2.64
VAPA-201ENST00000340541 ZCCHC6Q5VYS8 1495 aaKnown RBP31.4■■■□□ 2.62
VAPA-201ENST00000340541 PABPN1Q86U42 306 aaKnown RBP eCLIP31.34■■■□□ 2.61
VAPA-201ENST00000340541 UNC13AQ9UPW8 1703 aa31.28■■■□□ 2.6
VAPA-201ENST00000340541 DCAF1Q9Y4B6 1507 aa31.19■■■□□ 2.58
VAPA-201ENST00000340541 BICRAQ9NZM4 1560 aa31.13■■■□□ 2.57
VAPA-201ENST00000340541 SHROOM4Q9ULL8 1493 aa30.84■■■□□ 2.53
VAPA-201ENST00000340541 SCRIBQ14160 1630 aa30.62■■■□□ 2.49
VAPA-201ENST00000340541 CC2D2AQ9P2K1 1620 aa30.42■■■□□ 2.46
VAPA-201ENST00000340541 EIF4G1Q04637 1599 aaKnown RBP30.37■■■□□ 2.45
VAPA-201ENST00000340541 CECR2Q9BXF3 1484 aa30.36■■■□□ 2.45
VAPA-201ENST00000340541 NCAPD3P42695 1498 aa29.49■■■□□ 2.31
VAPA-201ENST00000340541 ATAD2BQ9ULI0 1458 aa29.35■■■□□ 2.29
VAPA-201ENST00000340541 SMARCA2P51531 1590 aa29.29■■■□□ 2.28
VAPA-201ENST00000340541 SMARCA4P51532 1647 aa29.27■■■□□ 2.28
VAPA-201ENST00000340541 HMGXB3Q12766 1538 aa29.23■■■□□ 2.27
VAPA-201ENST00000340541 BAZ1AQ9NRL2 1556 aaPredicted RBP29.2■■■□□ 2.26
VAPA-201ENST00000340541 DNAJC5Q9H3Z4 198 aa29.13■■■□□ 2.25
VAPA-201ENST00000340541 CUX2O14529 1486 aa29.11■■■□□ 2.25
VAPA-201ENST00000340541 ERCC6Q03468 1493 aa29.09■■■□□ 2.25
VAPA-201ENST00000340541 MROH2BQ7Z745 1585 aa29.06■■■□□ 2.24
VAPA-201ENST00000340541 PEG3Q9GZU2 1588 aa29.06■■■□□ 2.24
VAPA-201ENST00000340541 BAZ1BQ9UIG0 1483 aaKnown RBP29.04■■■□□ 2.24
VAPA-201ENST00000340541 NESP48681 1621 aa28.89■■■□□ 2.22
VAPA-201ENST00000340541 LAMC3Q9Y6N6 1575 aa28.79■■■□□ 2.2
VAPA-201ENST00000340541 WIZO95785 1651 aa28.74■■■□□ 2.19
VAPA-201ENST00000340541 RSF1Q96T23 1441 aaPredicted RBP28.69■■■□□ 2.18
VAPA-201ENST00000340541 PDS5BQ9NTI5 1447 aa28.66■■■□□ 2.18
VAPA-201ENST00000340541 THOC2Q8NI27 1593 aaKnown RBP28.62■■■□□ 2.17
VAPA-201ENST00000340541 CADPSQ9ULU8 1353 aa28.58■■■□□ 2.17
VAPA-201ENST00000340541 KIF21AQ7Z4S6 1674 aa28.51■■■□□ 2.15
VAPA-201ENST00000340541 TOP2AP11388 1531 aaKnown RBP28.42■■■□□ 2.14
VAPA-201ENST00000340541 MRC2Q9UBG0 1479 aa28.34■■■□□ 2.13
VAPA-201ENST00000340541 WDR62O43379 1518 aa28.27■■■□□ 2.12
VAPA-201ENST00000340541 CFTRP13569 1480 aa28.24■■■□□ 2.11
VAPA-201ENST00000340541 CEP164Q9UPV0 1460 aa28.23■■■□□ 2.11
VAPA-201ENST00000340541 FANCD2Q9BXW9 1451 aa28.2■■■□□ 2.1
VAPA-201ENST00000340541 CCDC88BA6NC98 1476 aa28.08■■■□□ 2.09
VAPA-201ENST00000340541 URB2Q14146 1524 aaKnown RBP27.94■■■□□ 2.06
VAPA-201ENST00000340541 PRDM2Q13029 1718 aa27.89■■■□□ 2.05
VAPA-201ENST00000340541 OSCARQ8IYS5 282 aa27.83■■■□□ 2.05
VAPA-201ENST00000340541 SUPT5HO00267 1087 aaKnown RBP27.82■■■□□ 2.04
VAPA-201ENST00000340541 TRIM41Q8WV44 630 aa27.72■■■□□ 2.03
VAPA-201ENST00000340541 ABCC8Q09428 1581 aa27.72■■■□□ 2.03
VAPA-201ENST00000340541 IFT140Q96RY7 1462 aa27.7■■■□□ 2.03
VAPA-201ENST00000340541 TOPBP1Q92547 1522 aa27.66■■■□□ 2.02
VAPA-201ENST00000340541 ZNF608Q9ULD9 1512 aaPredicted RBP27.57■■■□□ 2
VAPA-201ENST00000340541 DNMBPQ6XZF7 1577 aa27.56■■■□□ 2
VAPA-201ENST00000340541 EIF4G3O43432 1585 aaKnown RBP27.41■■□□□ 1.98
VAPA-201ENST00000340541 TARBP1Q13395 1621 aaKnown RBP27.41■■□□□ 1.98
VAPA-201ENST00000340541 POLA1P09884 1462 aaPredicted RBP27.37■■□□□ 1.97
VAPA-201ENST00000340541 AQRO60306 1485 aaKnown RBP eCLIP27.36■■□□□ 1.971e-7■■■□□ 17.5
VAPA-201ENST00000340541 RIMBP3CA6NJZ7 1639 aa27.33■■□□□ 1.97
VAPA-201ENST00000340541 RIMBP3BA6NNM3 1639 aa27.33■■□□□ 1.97
VAPA-201ENST00000340541 RIMBP3Q9UFD9 1639 aa27.33■■□□□ 1.97
VAPA-201ENST00000340541 SOGA1O94964 1423 aa27.3■■□□□ 1.96
VAPA-201ENST00000340541 ARHGEF11O15085 1522 aa27.26■■□□□ 1.96
VAPA-201ENST00000340541 CUX1P39880 1505 aa27.26■■□□□ 1.96
VAPA-201ENST00000340541 RAD54L2Q9Y4B4 1467 aa27.24■■□□□ 1.95
VAPA-201ENST00000340541 WDR97A6NE52 1622 aa27.22■■□□□ 1.95
VAPA-201ENST00000340541 TDRD9Q8NDG6 1382 aaKnown RBP27.2■■□□□ 1.94
VAPA-201ENST00000340541 CHD1O14646 1710 aa27.19■■□□□ 1.94
VAPA-201ENST00000340541 FBLN2P98095 1184 aa27.19■■□□□ 1.94
VAPA-201ENST00000340541 FGD5Q6ZNL6 1462 aa27.19■■□□□ 1.94
VAPA-201ENST00000340541 CYB5RLQ6IPT4 315 aa27.1■■□□□ 1.93
VAPA-201ENST00000340541 MAGI1Q96QZ7 1491 aaPredicted RBP27.06■■□□□ 1.92
VAPA-201ENST00000340541 GRIN2BQ13224 1484 aa27.06■■□□□ 1.92
VAPA-201ENST00000340541 SNAPC4Q5SXM2 1469 aa27.06■■□□□ 1.92
VAPA-201ENST00000340541 CHMP7Q8WUX9 453 aaPredicted RBP27.05■■□□□ 1.92
VAPA-201ENST00000340541 WRNQ14191 1432 aaPredicted RBP eCLIP27.02■■□□□ 1.92
VAPA-201ENST00000340541 BIVM-ERCC5R4GMW8 1640 aa27.01■■□□□ 1.91
VAPA-201ENST00000340541 SYNJ1O43426 1573 aa27.01■■□□□ 1.91
VAPA-201ENST00000340541 TOP2BQ02880 1626 aa27■■□□□ 1.91
VAPA-201ENST00000340541 ARAP1Q96P48 1450 aa26.98■■□□□ 1.91
VAPA-201ENST00000340541 SYNJ2O15056 1496 aa26.96■■□□□ 1.91
VAPA-201ENST00000340541 CLASP1Q7Z460 1538 aa26.95■■□□□ 1.9
VAPA-201ENST00000340541 GAPVD1Q14C86 1478 aa26.94■■□□□ 1.9
VAPA-201ENST00000340541 ABCA10Q8WWZ4 1543 aa26.93■■□□□ 1.9
VAPA-201ENST00000340541 PBRM1Q86U86 1689 aa26.85■■□□□ 1.89
VAPA-201ENST00000340541 ABCA5Q8WWZ7 1642 aa26.83■■□□□ 1.89
VAPA-201ENST00000340541 TRHP20396 242 aaPredicted RBP26.79■■□□□ 1.88
VAPA-201ENST00000340541 GRIN2AQ12879 1464 aa26.68■■□□□ 1.86
VAPA-201ENST00000340541 FHAD1B1AJZ9 1412 aa26.63■■□□□ 1.85
VAPA-201ENST00000340541 NUP160Q12769 1436 aa26.62■■□□□ 1.85
VAPA-201ENST00000340541 ADAMTS12P58397 1594 aa26.62■■□□□ 1.85
VAPA-201ENST00000340541 ERICH3Q5RHP9 1530 aa26.61■■□□□ 1.85
VAPA-201ENST00000340541 CEP170Q5SW79 1584 aa26.54■■□□□ 1.84
VAPA-201ENST00000340541 SHROOM2Q13796 1616 aa26.47■■□□□ 1.83
VAPA-201ENST00000340541 KIF27Q86VH2 1401 aa26.45■■□□□ 1.82
VAPA-201ENST00000340541 ERCC6L2Q5T890 1561 aa26.45■■□□□ 1.82
VAPA-201ENST00000340541 AEBP2Q6ZN18 517 aaPredicted RBP26.42■■□□□ 1.82
VAPA-201ENST00000340541 JPH4Q96JJ6 628 aa26.39■■□□□ 1.82
VAPA-201ENST00000340541 IGF1RP08069 1367 aa26.38■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms