RNA–Protein interactions for RNA: ENST00000461862.5

SCNM1-204, Transcript of sodium channel modifier 1, humanhuman

TSL 2

Gene SCNM1, Length 1,094 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCNM1-204ENST00000461862 AEBP2Q6ZN18 517 aaPredicted RBP37.46■■■■□ 3.59
SCNM1-204ENST00000461862 CHIC1Q5VXU3 224 aa35.87■■■■□ 3.33
SCNM1-204ENST00000461862 SENP3Q9H4L4 574 aaPredicted RBP31.77■■■□□ 2.68
SCNM1-204ENST00000461862 PHF23Q9BUL5 403 aaPredicted RBP31.54■■■□□ 2.64
SCNM1-204ENST00000461862 FOXD1Q16676 465 aa29.64■■■□□ 2.34
SCNM1-204ENST00000461862 PLPPR3Q6T4P5 718 aa28.78■■■□□ 2.2
SCNM1-204ENST00000461862 PPP6R1Q9UPN7 881 aa28.04■■■□□ 2.08
SCNM1-204ENST00000461862 ADRA2BP18089 450 aa27.94■■■□□ 2.06
SCNM1-204ENST00000461862 PIAS4Q8N2W9 510 aaPredicted RBP27.75■■■□□ 2.03
SCNM1-204ENST00000461862 MSH5O43196 834 aa27.51■■□□□ 1.99
SCNM1-204ENST00000461862 POTEDQ86YR6 584 aa26.28■■□□□ 1.8
SCNM1-204ENST00000461862 MAPK8IP2Q13387 824 aaPredicted RBP25.56■■□□□ 1.68
SCNM1-204ENST00000461862 SCAF1Q9H7N4 1312 aaKnown RBP25.42■■□□□ 1.66
SCNM1-204ENST00000461862 PPP4R3CPQ6ZMV5 832 aa25.31■■□□□ 1.64
SCNM1-204ENST00000461862 DMRT2Q9Y5R5 561 aa25.3■■□□□ 1.64
SCNM1-204ENST00000461862 CNKSR2Q8WXI2 1034 aa24.71■■□□□ 1.55
SCNM1-204ENST00000461862 HOXD11P31277 338 aaPredicted RBP24.52■■□□□ 1.52
SCNM1-204ENST00000461862 RNF216Q9NWF9 866 aaPredicted RBP24.41■■□□□ 1.5
SCNM1-204ENST00000461862 NCBP3Q53F19 620 aaKnown RBP24.36■■□□□ 1.49
SCNM1-204ENST00000461862 DCAF8L1A6NGE4 600 aa24.17■■□□□ 1.46
SCNM1-204ENST00000461862 NPM3O75607 178 aaKnown RBP24.13■■□□□ 1.45
SCNM1-204ENST00000461862 KCNA4P22459 653 aa24.02■■□□□ 1.44
SCNM1-204ENST00000461862 RNF39Q9H2S5 420 aa23.57■■□□□ 1.36
SCNM1-204ENST00000461862 DNAJC5BQ9UF47 199 aa23.55■■□□□ 1.36
SCNM1-204ENST00000461862 NISCHQ9Y2I1 1504 aa23.37■■□□□ 1.33
SCNM1-204ENST00000461862 CACNB1Q02641 598 aaPredicted RBP23.36■■□□□ 1.33
SCNM1-204ENST00000461862 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.29■■□□□ 1.32
SCNM1-204ENST00000461862 C1QBPQ07021 282 aaKnown RBP23.19■■□□□ 1.3
SCNM1-204ENST00000461862 SLC4A2P04920 1241 aa22.98■■□□□ 1.27
SCNM1-204ENST00000461862 U3KPZ7 1027 aaPredicted RBP22.94■■□□□ 1.26
SCNM1-204ENST00000461862 SLC4A1APQ9BWU0 796 aaKnown RBP22.69■■□□□ 1.22
SCNM1-204ENST00000461862 SPINK5Q9NQ38 1064 aaPredicted RBP22.5■■□□□ 1.19
SCNM1-204ENST00000461862 CAPN15O75808 1086 aa22.36■■□□□ 1.17
SCNM1-204ENST00000461862 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.28■■□□□ 1.16
SCNM1-204ENST00000461862 HNRNPUL2Q1KMD3 747 aaKnown RBP22.28■■□□□ 1.16
SCNM1-204ENST00000461862 MYCNP04198 464 aaPredicted RBP22.26■■□□□ 1.15
SCNM1-204ENST00000461862 FOXD4L1Q9NU39 408 aa22.25■■□□□ 1.15
SCNM1-204ENST00000461862 SAMD1Q6SPF0 538 aaPredicted RBP22.21■■□□□ 1.15
SCNM1-204ENST00000461862 DSG3P32926 999 aa22.2■■□□□ 1.14
SCNM1-204ENST00000461862 APLP2Q06481 763 aa22.18■■□□□ 1.14
SCNM1-204ENST00000461862 ZBTB22O15209 634 aa22.16■■□□□ 1.14
SCNM1-204ENST00000461862 TRHP20396 242 aaPredicted RBP22.1■■□□□ 1.13
SCNM1-204ENST00000461862 ZNF219Q9P2Y4 722 aaPredicted RBP22.05■■□□□ 1.12
SCNM1-204ENST00000461862 ABCB7O75027 752 aa21.93■■□□□ 1.1
SCNM1-204ENST00000461862 ATF5Q9Y2D1 282 aaPredicted RBP21.81■■□□□ 1.08
SCNM1-204ENST00000461862 POLA2Q14181 598 aa21.6■■□□□ 1.05
SCNM1-204ENST00000461862 ATXN8OSP0DMR3 200 aa21.49■■□□□ 1.03
SCNM1-204ENST00000461862 CSRNP3Q8WYN3 585 aa21.42■■□□□ 1.02
SCNM1-204ENST00000461862 EHMT2Q96KQ7 1210 aa21.32■■□□□ 1
SCNM1-204ENST00000461862 ZBTB12Q9Y330 459 aaPredicted RBP21.14■□□□□ 0.97
SCNM1-204ENST00000461862 RBM42Q9BTD8 480 aaKnown RBP21.08■□□□□ 0.97
SCNM1-204ENST00000461862 OSCARQ8IYS5 282 aa20.95■□□□□ 0.94
SCNM1-204ENST00000461862 MKRN4PQ13434 485 aaPredicted RBP20.83■□□□□ 0.93
SCNM1-204ENST00000461862 FBLN2P98095 1184 aa20.79■□□□□ 0.92
SCNM1-204ENST00000461862 AKT1S1Q96B36 256 aa20.71■□□□□ 0.91
SCNM1-204ENST00000461862 POTEHQ6S545 545 aa20.64■□□□□ 0.89
SCNM1-204ENST00000461862 CCDC180Q9P1Z9 1646 aa20.6■□□□□ 0.89
SCNM1-204ENST00000461862 SPDYE2BA6NHP3 402 aa20.56■□□□□ 0.88
SCNM1-204ENST00000461862 SPDYE6P0CI01 402 aa20.56■□□□□ 0.88
SCNM1-204ENST00000461862 SPDYE2Q495Y8 402 aa20.56■□□□□ 0.88
SCNM1-204ENST00000461862 REM2Q8IYK8 340 aaPredicted RBP20.55■□□□□ 0.88
SCNM1-204ENST00000461862 CHRDL2Q6WN34 429 aa20.53■□□□□ 0.88
SCNM1-204ENST00000461862 SSUH2Q9Y2M2 353 aa20.39■□□□□ 0.85
SCNM1-204ENST00000461862 PITPNM1O00562 1244 aa20.36■□□□□ 0.85
SCNM1-204ENST00000461862 ZNF692Q9BU19 519 aaPredicted RBP20.36■□□□□ 0.85
SCNM1-204ENST00000461862 ABCC9O60706 1549 aa20.31■□□□□ 0.84
SCNM1-204ENST00000461862 PIP4P2Q8N4L2 257 aa20.15■□□□□ 0.82
SCNM1-204ENST00000461862 PABPN1Q86U42 306 aaKnown RBP eCLIP20.11■□□□□ 0.81
SCNM1-204ENST00000461862 FXR2P51116 673 aaKnown RBP eCLIP20.09■□□□□ 0.81
SCNM1-204ENST00000461862 SPDYE1Q8NFV5 336 aaPredicted RBP20.09■□□□□ 0.81
SCNM1-204ENST00000461862 CLEC11AQ9Y240 323 aa20.04■□□□□ 0.8
SCNM1-204ENST00000461862 SPDYE4A6NLX3 237 aa19.95■□□□□ 0.78
SCNM1-204ENST00000461862 PRKAR2AP13861 404 aaKnown RBP19.79■□□□□ 0.76
SCNM1-204ENST00000461862 PRR29P0C7W0 189 aa19.75■□□□□ 0.75
SCNM1-204ENST00000461862 CHADLQ6NUI6 762 aa19.69■□□□□ 0.74
SCNM1-204ENST00000461862 ZCCHC6Q5VYS8 1495 aaKnown RBP19.66■□□□□ 0.74
SCNM1-204ENST00000461862 HAX1O00165 279 aa19.61■□□□□ 0.73
SCNM1-204ENST00000461862 PROM2Q8N271 834 aa19.6■□□□□ 0.73
SCNM1-204ENST00000461862 DCAF8L2P0C7V8 631 aa19.56■□□□□ 0.72
SCNM1-204ENST00000461862 STAG3Q9UJ98 1225 aa19.56■□□□□ 0.72
SCNM1-204ENST00000461862 SP7Q8TDD2 431 aaPredicted RBP19.53■□□□□ 0.72
SCNM1-204ENST00000461862 EVX2Q03828 476 aa19.52■□□□□ 0.72
SCNM1-204ENST00000461862 CREBZFQ9NS37 354 aa19.44■□□□□ 0.7
SCNM1-204ENST00000461862 C19orf67A6NJJ6 358 aa19.43■□□□□ 0.7
SCNM1-204ENST00000461862 DCAF1Q9Y4B6 1507 aa19.42■□□□□ 0.7
SCNM1-204ENST00000461862 FARP1Q9Y4F1 1045 aaPredicted RBP19.4■□□□□ 0.7
SCNM1-204ENST00000461862 RB1CC1Q8TDY2 1594 aa19.37■□□□□ 0.69
SCNM1-204ENST00000461862 FKBP8Q14318 412 aa19.36■□□□□ 0.69
SCNM1-204ENST00000461862 NACADO15069 1562 aa19.36■□□□□ 0.69
SCNM1-204ENST00000461862 MYO15BQ96JP2 1530 aa19.21■□□□□ 0.67
SCNM1-204ENST00000461862 CD44P16070 742 aaKnown RBP19.19■□□□□ 0.66
SCNM1-204ENST00000461862 MNX1P50219 401 aaPredicted RBP19.19■□□□□ 0.66
SCNM1-204ENST00000461862 UNC13AQ9UPW8 1703 aa19.05■□□□□ 0.64
SCNM1-204ENST00000461862 GABBR2O75899 941 aa19.03■□□□□ 0.64
SCNM1-204ENST00000461862 SCRIBQ14160 1630 aa19.01■□□□□ 0.63
SCNM1-204ENST00000461862 NPM1P06748 294 aaKnown RBP eCLIP18.98■□□□□ 0.63
SCNM1-204ENST00000461862 ZRANB1Q9UGI0 708 aa18.97■□□□□ 0.63
SCNM1-204ENST00000461862 BICRAQ9NZM4 1560 aa18.96■□□□□ 0.63
SCNM1-204ENST00000461862 MIER1Q8N108 512 aa18.94■□□□□ 0.62
SCNM1-204ENST00000461862 ZNF579Q8NAF0 562 aaKnown RBP18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms