RNA–Protein interactions for RNA: ENST00000366813.1

H3F3A-201, Transcript of H3 histone family member 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene H3F3A, Length 1,308 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3A-201ENST00000366813 AEBP2Q6ZN18 517 aaPredicted RBP36.99■■■■□ 3.51
H3F3A-201ENST00000366813 CHIC1Q5VXU3 224 aa35.51■■■■□ 3.27
H3F3A-201ENST00000366813 SENP3Q9H4L4 574 aaPredicted RBP31.6■■■□□ 2.65
H3F3A-201ENST00000366813 PHF23Q9BUL5 403 aaPredicted RBP31.24■■■□□ 2.59
H3F3A-201ENST00000366813 FOXD1Q16676 465 aa29.37■■■□□ 2.29
H3F3A-201ENST00000366813 PLPPR3Q6T4P5 718 aa28.59■■■□□ 2.17
H3F3A-201ENST00000366813 PPP6R1Q9UPN7 881 aa27.71■■■□□ 2.03
H3F3A-201ENST00000366813 ADRA2BP18089 450 aa27.69■■■□□ 2.02
H3F3A-201ENST00000366813 PIAS4Q8N2W9 510 aaPredicted RBP27.59■■■□□ 2.01
H3F3A-201ENST00000366813 MSH5O43196 834 aa27.41■■□□□ 1.98
H3F3A-201ENST00000366813 POTEDQ86YR6 584 aa26.12■■□□□ 1.77
H3F3A-201ENST00000366813 SCAF1Q9H7N4 1312 aaKnown RBP25.45■■□□□ 1.66
H3F3A-201ENST00000366813 MAPK8IP2Q13387 824 aaPredicted RBP25.33■■□□□ 1.64
H3F3A-201ENST00000366813 PPP4R3CPQ6ZMV5 832 aa25.11■■□□□ 1.61
H3F3A-201ENST00000366813 DMRT2Q9Y5R5 561 aa25.08■■□□□ 1.6
H3F3A-201ENST00000366813 CNKSR2Q8WXI2 1034 aa24.56■■□□□ 1.52
H3F3A-201ENST00000366813 NCBP3Q53F19 620 aaKnown RBP24.33■■□□□ 1.48
H3F3A-201ENST00000366813 HOXD11P31277 338 aaPredicted RBP24.26■■□□□ 1.47
H3F3A-201ENST00000366813 RNF216Q9NWF9 866 aaPredicted RBP24.22■■□□□ 1.47
H3F3A-201ENST00000366813 DCAF8L1A6NGE4 600 aa24.19■■□□□ 1.46
H3F3A-201ENST00000366813 NPM3O75607 178 aaKnown RBP23.86■■□□□ 1.41
H3F3A-201ENST00000366813 KCNA4P22459 653 aa23.71■■□□□ 1.39
H3F3A-201ENST00000366813 CACNB1Q02641 598 aaPredicted RBP23.36■■□□□ 1.33
H3F3A-201ENST00000366813 RNF39Q9H2S5 420 aa23.36■■□□□ 1.33
H3F3A-201ENST00000366813 DNAJC5BQ9UF47 199 aa23.34■■□□□ 1.33
H3F3A-201ENST00000366813 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.27■■□□□ 1.32
H3F3A-201ENST00000366813 C1QBPQ07021 282 aaKnown RBP23.09■■□□□ 1.29
H3F3A-201ENST00000366813 U3KPZ7 1027 aaPredicted RBP22.68■■□□□ 1.22
H3F3A-201ENST00000366813 SLC4A2P04920 1241 aa22.65■■□□□ 1.22
H3F3A-201ENST00000366813 SLC4A1APQ9BWU0 796 aaKnown RBP22.51■■□□□ 1.19
H3F3A-201ENST00000366813 CAPN15O75808 1086 aa22.32■■□□□ 1.16
H3F3A-201ENST00000366813 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.28■■□□□ 1.16
H3F3A-201ENST00000366813 HNRNPUL2Q1KMD3 747 aaKnown RBP22.28■■□□□ 1.16
H3F3A-201ENST00000366813 SPINK5Q9NQ38 1064 aaPredicted RBP22.28■■□□□ 1.16
H3F3A-201ENST00000366813 APLP2Q06481 763 aa22.24■■□□□ 1.15
H3F3A-201ENST00000366813 SAMD1Q6SPF0 538 aaPredicted RBP22.14■■□□□ 1.14
H3F3A-201ENST00000366813 MYCNP04198 464 aaPredicted RBP22.09■■□□□ 1.13
H3F3A-201ENST00000366813 TRHP20396 242 aaPredicted RBP22.06■■□□□ 1.12
H3F3A-201ENST00000366813 FOXD4L1Q9NU39 408 aa22.04■■□□□ 1.12
H3F3A-201ENST00000366813 DSG3P32926 999 aa22.01■■□□□ 1.11
H3F3A-201ENST00000366813 ZNF219Q9P2Y4 722 aaPredicted RBP21.97■■□□□ 1.11
H3F3A-201ENST00000366813 ABCB7O75027 752 aa21.8■■□□□ 1.08
H3F3A-201ENST00000366813 ZBTB22O15209 634 aa21.73■■□□□ 1.07
H3F3A-201ENST00000366813 POLA2Q14181 598 aa21.51■■□□□ 1.03
H3F3A-201ENST00000366813 ATF5Q9Y2D1 282 aaPredicted RBP21.5■■□□□ 1.03
H3F3A-201ENST00000366813 ATXN8OSP0DMR3 200 aa21.33■■□□□ 1.01
H3F3A-201ENST00000366813 ZBTB12Q9Y330 459 aaPredicted RBP21.11■□□□□ 0.97
H3F3A-201ENST00000366813 CSRNP3Q8WYN3 585 aa21.1■□□□□ 0.97
H3F3A-201ENST00000366813 EHMT2Q96KQ7 1210 aa21.1■□□□□ 0.97
H3F3A-201ENST00000366813 RBM42Q9BTD8 480 aaKnown RBP21.06■□□□□ 0.96
H3F3A-201ENST00000366813 FBLN2P98095 1184 aa20.78■□□□□ 0.92
H3F3A-201ENST00000366813 OSCARQ8IYS5 282 aa20.76■□□□□ 0.91
H3F3A-201ENST00000366813 AKT1S1Q96B36 256 aa20.63■□□□□ 0.89
H3F3A-201ENST00000366813 POTEHQ6S545 545 aa20.56■□□□□ 0.88
H3F3A-201ENST00000366813 MKRN4PQ13434 485 aaPredicted RBP20.52■□□□□ 0.87
H3F3A-201ENST00000366813 SPDYE2BA6NHP3 402 aa20.45■□□□□ 0.86
H3F3A-201ENST00000366813 SPDYE6P0CI01 402 aa20.45■□□□□ 0.86
H3F3A-201ENST00000366813 SPDYE2Q495Y8 402 aa20.45■□□□□ 0.86
H3F3A-201ENST00000366813 CHRDL2Q6WN34 429 aa20.43■□□□□ 0.86
H3F3A-201ENST00000366813 REM2Q8IYK8 340 aaPredicted RBP20.43■□□□□ 0.86
H3F3A-201ENST00000366813 ZNF692Q9BU19 519 aaPredicted RBP20.32■□□□□ 0.84
H3F3A-201ENST00000366813 PITPNM1O00562 1244 aa20.17■□□□□ 0.82
H3F3A-201ENST00000366813 SSUH2Q9Y2M2 353 aa20.14■□□□□ 0.81
H3F3A-201ENST00000366813 SPDYE1Q8NFV5 336 aaPredicted RBP20.04■□□□□ 0.8
H3F3A-201ENST00000366813 CLEC11AQ9Y240 323 aa20.04■□□□□ 0.8
H3F3A-201ENST00000366813 PABPN1Q86U42 306 aaKnown RBP eCLIP20.01■□□□□ 0.79
H3F3A-201ENST00000366813 PIP4P2Q8N4L2 257 aa20.01■□□□□ 0.79
H3F3A-201ENST00000366813 FXR2P51116 673 aaKnown RBP eCLIP19.92■□□□□ 0.78
H3F3A-201ENST00000366813 SPDYE4A6NLX3 237 aa19.82■□□□□ 0.76
H3F3A-201ENST00000366813 PRR29P0C7W0 189 aa19.76■□□□□ 0.75
H3F3A-201ENST00000366813 PRKAR2AP13861 404 aaKnown RBP19.72■□□□□ 0.75
H3F3A-201ENST00000366813 HAX1O00165 279 aa19.65■□□□□ 0.74
H3F3A-201ENST00000366813 STAG3Q9UJ98 1225 aa19.57■□□□□ 0.72
H3F3A-201ENST00000366813 CHADLQ6NUI6 762 aa19.54■□□□□ 0.72
H3F3A-201ENST00000366813 SP7Q8TDD2 431 aaPredicted RBP19.44■□□□□ 0.7
H3F3A-201ENST00000366813 FARP1Q9Y4F1 1045 aaPredicted RBP19.3■□□□□ 0.68
H3F3A-201ENST00000366813 EVX2Q03828 476 aa19.29■□□□□ 0.68
H3F3A-201ENST00000366813 C19orf67A6NJJ6 358 aa19.27■□□□□ 0.68
H3F3A-201ENST00000366813 PROM2Q8N271 834 aa19.25■□□□□ 0.67
H3F3A-201ENST00000366813 CREBZFQ9NS37 354 aa19.24■□□□□ 0.67
H3F3A-201ENST00000366813 FKBP8Q14318 412 aa19.2■□□□□ 0.66
H3F3A-201ENST00000366813 CD44P16070 742 aaKnown RBP19.1■□□□□ 0.65
H3F3A-201ENST00000366813 NPM1P06748 294 aaKnown RBP eCLIP19.01■□□□□ 0.63
H3F3A-201ENST00000366813 PLEKHG5O94827 1062 aa18.96■□□□□ 0.63
H3F3A-201ENST00000366813 MIER1Q8N108 512 aa18.96■□□□□ 0.63
H3F3A-201ENST00000366813 GABBR2O75899 941 aa18.94■□□□□ 0.62
H3F3A-201ENST00000366813 ZRANB1Q9UGI0 708 aa18.92■□□□□ 0.62
H3F3A-201ENST00000366813 PAK3O75914 559 aaPredicted RBP18.9■□□□□ 0.62
H3F3A-201ENST00000366813 MNX1P50219 401 aaPredicted RBP18.9■□□□□ 0.62
H3F3A-201ENST00000366813 PLCD3Q8N3E9 789 aa18.84■□□□□ 0.61
H3F3A-201ENST00000366813 CLCN6P51797 869 aa18.8■□□□□ 0.6
H3F3A-201ENST00000366813 ZNF579Q8NAF0 562 aaKnown RBP18.76■□□□□ 0.59
H3F3A-201ENST00000366813 FBXO3Q9UK99 471 aa18.75■□□□□ 0.59
H3F3A-201ENST00000366813 TSPYL2Q9H2G4 693 aaPredicted RBP18.67■□□□□ 0.58
H3F3A-201ENST00000366813 ZBTB47Q9UFB7 747 aaPredicted RBP18.66■□□□□ 0.58
H3F3A-201ENST00000366813 PHF12Q96QT6 1004 aa18.63■□□□□ 0.57
H3F3A-201ENST00000366813 DCBLD2Q96PD2 775 aa18.59■□□□□ 0.57
H3F3A-201ENST00000366813 GALR2O43603 387 aaPredicted RBP18.53■□□□□ 0.56
H3F3A-201ENST00000366813 RASEFQ8IZ41 740 aa18.49■□□□□ 0.55
H3F3A-201ENST00000366813 POTEIP0CG38 1075 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms