RNA–Protein interactions for RNA: ENST00000430321.5

UBR3-204, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 5

Gene UBR3, Length 5,411 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-204ENST00000430321 DCAF8L2P0C7V8 631 aa10.24□□□□□ -0.77
UBR3-204ENST00000430321 NISCHQ9Y2I1 1504 aa10.18□□□□□ -0.78
UBR3-204ENST00000430321 FAM9AQ8IZU1 332 aaPredicted RBP9.94□□□□□ -0.82
UBR3-204ENST00000430321 APLP2Q06481 763 aa9.44□□□□□ -0.9
UBR3-204ENST00000430321 SUPT5HO00267 1087 aaKnown RBP9.31□□□□□ -0.92
UBR3-204ENST00000430321 PELP1Q8IZL8 1130 aaKnown RBP9.16□□□□□ -0.94
UBR3-204ENST00000430321 SHROOM4Q9ULL8 1493 aa9.16□□□□□ -0.94
UBR3-204ENST00000430321 TRIM41Q8WV44 630 aa8.92□□□□□ -0.98
UBR3-204ENST00000430321 ATP1B4Q9UN42 357 aaPredicted RBP8.88□□□□□ -0.99
UBR3-204ENST00000430321 MYT1LQ9UL68 1186 aa8.87□□□□□ -0.99
UBR3-204ENST00000430321 ABCC9O60706 1549 aa8.85□□□□□ -0.99
UBR3-204ENST00000430321 UBTFP17480 764 aaKnown RBP8.84□□□□□ -0.99
UBR3-204ENST00000430321 ZEB1P37275 1124 aaPredicted RBP8.8□□□□□ -1
UBR3-204ENST00000430321 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.78□□□□□ -1
UBR3-204ENST00000430321 HNRNPUL2Q1KMD3 747 aaKnown RBP8.78□□□□□ -1
UBR3-204ENST00000430321 CCER1Q8TC90 406 aaPredicted RBP8.77□□□□□ -1.01
UBR3-204ENST00000430321 CCDC180Q9P1Z9 1646 aa8.75□□□□□ -1.01
UBR3-204ENST00000430321 EHMT2Q96KQ7 1210 aa8.71□□□□□ -1.02
UBR3-204ENST00000430321 RB1CC1Q8TDY2 1594 aa8.67□□□□□ -1.02
UBR3-204ENST00000430321 RANGAP1P46060 587 aaPredicted RBP8.64□□□□□ -1.03
UBR3-204ENST00000430321 NPM1P06748 294 aaKnown RBP eCLIP8.64□□□□□ -1.03
UBR3-204ENST00000430321 CDK11AQ9UQ88 783 aaPredicted RBP8.6□□□□□ -1.03
UBR3-204ENST00000430321 ESF1Q9H501 851 aaKnown RBP8.59□□□□□ -1.03
UBR3-204ENST00000430321 PABPN1Q86U42 306 aaKnown RBP eCLIP8.59□□□□□ -1.03
UBR3-204ENST00000430321 NACADO15069 1562 aa8.54□□□□□ -1.04
UBR3-204ENST00000430321 NEFLP07196 543 aa8.53□□□□□ -1.04
UBR3-204ENST00000430321 ACIN1Q9UKV3 1341 aaKnown RBP8.53□□□□□ -1.04
UBR3-204ENST00000430321 CENPBP07199 599 aaPredicted RBP8.53□□□□□ -1.04
UBR3-204ENST00000430321 TTBK1Q5TCY1 1321 aaPredicted RBP8.52□□□□□ -1.05
UBR3-204ENST00000430321 FBLN2P98095 1184 aa8.5□□□□□ -1.05
UBR3-204ENST00000430321 ERICH6Q7L0X2 663 aa8.46□□□□□ -1.05
UBR3-204ENST00000430321 SCRIBQ14160 1630 aa8.45□□□□□ -1.06
UBR3-204ENST00000430321 NEFMP07197 916 aa8.44□□□□□ -1.06
UBR3-204ENST00000430321 PCGF6Q9BYE7 350 aa8.43□□□□□ -1.06
UBR3-204ENST00000430321 SLC4A1APQ9BWU0 796 aaKnown RBP8.39□□□□□ -1.07
UBR3-204ENST00000430321 BCANQ96GW7 911 aa8.38□□□□□ -1.07
UBR3-204ENST00000430321 ZCCHC6Q5VYS8 1495 aaKnown RBP8.37□□□□□ -1.07
UBR3-204ENST00000430321 ERCC6Q03468 1493 aa8.35□□□□□ -1.07
UBR3-204ENST00000430321 TRIM52Q96A61 297 aa8.35□□□□□ -1.07
UBR3-204ENST00000430321 DAXXQ9UER7 740 aaPredicted RBP8.34□□□□□ -1.07
UBR3-204ENST00000430321 STAG3Q9UJ98 1225 aa8.34□□□□□ -1.07
UBR3-204ENST00000430321 ZBTB47Q9UFB7 747 aaPredicted RBP8.33□□□□□ -1.08
UBR3-204ENST00000430321 FAM50AQ14320 339 aaKnown RBP8.32□□□□□ -1.08
UBR3-204ENST00000430321 CHMP7Q8WUX9 453 aaPredicted RBP8.32□□□□□ -1.08
UBR3-204ENST00000430321 TRIM26Q12899 539 aaPredicted RBP8.32□□□□□ -1.08
UBR3-204ENST00000430321 CHIC1Q5VXU3 224 aa8.32□□□□□ -1.08
UBR3-204ENST00000430321 ITGAEP38570 1179 aa8.29□□□□□ -1.08
UBR3-204ENST00000430321 POLR3GLQ9BT43 218 aa8.29□□□□□ -1.08
UBR3-204ENST00000430321 DCAF1Q9Y4B6 1507 aa8.27□□□□□ -1.09
UBR3-204ENST00000430321 BAZ1BQ9UIG0 1483 aaKnown RBP8.26□□□□□ -1.09
UBR3-204ENST00000430321 YTHDC1Q96MU7 727 aaKnown RBP8.25□□□□□ -1.09
UBR3-204ENST00000430321 EEA1Q15075 1411 aa8.25□□□□□ -1.09
UBR3-204ENST00000430321 RSF1Q96T23 1441 aaPredicted RBP8.24□□□□□ -1.09
UBR3-204ENST00000430321 CSRNP3Q8WYN3 585 aa8.23□□□□□ -1.09
UBR3-204ENST00000430321 TSPY4P0CV99 314 aa8.21□□□□□ -1.1
UBR3-204ENST00000430321 TSPY10P0CW01 314 aa8.21□□□□□ -1.1
UBR3-204ENST00000430321 PDS5BQ9NTI5 1447 aa8.21□□□□□ -1.1
UBR3-204ENST00000430321 HDGFP51858 240 aaKnown RBP8.2□□□□□ -1.1
UBR3-204ENST00000430321 SMARCA2P51531 1590 aa8.18□□□□□ -1.1
UBR3-204ENST00000430321 BAZ1AQ9NRL2 1556 aaPredicted RBP8.18□□□□□ -1.1
UBR3-204ENST00000430321 MYO15BQ96JP2 1530 aa8.17□□□□□ -1.1
UBR3-204ENST00000430321 ZNF777Q9ULD5 760 aaPredicted RBP8.17□□□□□ -1.1
UBR3-204ENST00000430321 PLEKHD1A6NEE1 506 aa8.16□□□□□ -1.1
UBR3-204ENST00000430321 SLC24A1O60721 1099 aa8.15□□□□□ -1.11
UBR3-204ENST00000430321 NPM2Q86SE8 214 aaKnown RBP8.14□□□□□ -1.11
UBR3-204ENST00000430321 PPP1R15AO75807 674 aaPredicted RBP8.12□□□□□ -1.11
UBR3-204ENST00000430321 KIF27Q86VH2 1401 aa8.12□□□□□ -1.11
UBR3-204ENST00000430321 CLSPNQ9HAW4 1339 aa8.11□□□□□ -1.11
UBR3-204ENST00000430321 CARMIL2Q6F5E8 1435 aa8.11□□□□□ -1.11
UBR3-204ENST00000430321 ARID4BQ4LE39 1312 aaPredicted RBP8.1□□□□□ -1.11
UBR3-204ENST00000430321 MTUS2Q5JR59 1369 aa8.1□□□□□ -1.11
UBR3-204ENST00000430321 CLIP1P30622 1438 aa8.1□□□□□ -1.11
UBR3-204ENST00000430321 CHGAP10645 457 aaKnown RBP8.1□□□□□ -1.11
UBR3-204ENST00000430321 KANK1Q14678 1352 aa8.09□□□□□ -1.11
UBR3-204ENST00000430321 ABCC8Q09428 1581 aa8.08□□□□□ -1.12
UBR3-204ENST00000430321 CANXP27824 592 aaKnown RBP8.08□□□□□ -1.12
UBR3-204ENST00000430321 ANP32CO43423 234 aa8.08□□□□□ -1.12
UBR3-204ENST00000430321 ZNF316A6NFI3 1004 aaPredicted RBP8.08□□□□□ -1.12
UBR3-204ENST00000430321 CDCA8Q53HL2 280 aa8.07□□□□□ -1.12
UBR3-204ENST00000430321 WRNQ14191 1432 aaPredicted RBP eCLIP8.07□□□□□ -1.12
UBR3-204ENST00000430321 ZNF326Q5BKZ1 582 aaKnown RBP8.06□□□□□ -1.12
UBR3-204ENST00000430321 C14orf37Q86TY3 774 aa8.06□□□□□ -1.12
UBR3-204ENST00000430321 EIF5BO60841 1220 aaKnown RBP8.06□□□□□ -1.12
UBR3-204ENST00000430321 HAP1P54257 671 aaPredicted RBP8.06□□□□□ -1.12
UBR3-204ENST00000430321 CEP164Q9UPV0 1460 aa8.05□□□□□ -1.12
UBR3-204ENST00000430321 TRHP20396 242 aaPredicted RBP8.05□□□□□ -1.12
UBR3-204ENST00000430321 P3H3Q8IVL6 736 aa8.04□□□□□ -1.12
UBR3-204ENST00000430321 EIF4G2P78344 907 aaKnown RBP eCLIP8.03□□□□□ -1.12
UBR3-204ENST00000430321 TONSLQ96HA7 1378 aa8.03□□□□□ -1.12
UBR3-204ENST00000430321 CEP162Q5TB80 1403 aa8.02□□□□□ -1.13
UBR3-204ENST00000430321 GOLGA3Q08378 1498 aa8.02□□□□□ -1.13
UBR3-204ENST00000430321 FHAD1B1AJZ9 1412 aa8.02□□□□□ -1.13
UBR3-204ENST00000430321 MYT1Q01538 1121 aa8.01□□□□□ -1.13
UBR3-204ENST00000430321 FOXD1Q16676 465 aa8□□□□□ -1.13
UBR3-204ENST00000430321 NEUROD1Q13562 356 aa8□□□□□ -1.13
UBR3-204ENST00000430321 CECR2Q9BXF3 1484 aa7.98□□□□□ -1.13
UBR3-204ENST00000430321 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.98□□□□□ -1.13
UBR3-204ENST00000430321 PLPPR3Q6T4P5 718 aa7.98□□□□□ -1.13
UBR3-204ENST00000430321 SCAF1Q9H7N4 1312 aaKnown RBP7.97□□□□□ -1.13
UBR3-204ENST00000430321 ARID3CA6NKF2 412 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms