RNA–Protein interactions for RNA: ENST00000478459.5

EPHB4-205, Transcript of EPH receptor B4, humanhuman

TSL 2

Gene EPHB4, Length 965 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB4-205ENST00000478459 NISCHQ9Y2I1 1504 aa46.96■■■■■ 5.11
EPHB4-205ENST00000478459 CCDC180Q9P1Z9 1646 aa41.9■■■■■ 4.3
EPHB4-205ENST00000478459 ABCC9O60706 1549 aa41.68■■■■■ 4.26
EPHB4-205ENST00000478459 DCAF8L2P0C7V8 631 aa39.74■■■■□ 3.95
EPHB4-205ENST00000478459 RB1CC1Q8TDY2 1594 aa39.7■■■■□ 3.95
EPHB4-205ENST00000478459 NACADO15069 1562 aa39.47■■■■□ 3.91
EPHB4-205ENST00000478459 ZCCHC6Q5VYS8 1495 aaKnown RBP39■■■■□ 3.83
EPHB4-205ENST00000478459 UNC13AQ9UPW8 1703 aa38.98■■■■□ 3.83
EPHB4-205ENST00000478459 PABPN1Q86U42 306 aaKnown RBP eCLIP38.93■■■■□ 3.82
EPHB4-205ENST00000478459 MYO15BQ96JP2 1530 aa38.92■■■■□ 3.82
EPHB4-205ENST00000478459 DNAJC5BQ9UF47 199 aa38.68■■■■□ 3.78
EPHB4-205ENST00000478459 DCAF1Q9Y4B6 1507 aa38.65■■■■□ 3.78
EPHB4-205ENST00000478459 BICRAQ9NZM4 1560 aa38.59■■■■□ 3.77
EPHB4-205ENST00000478459 SCRIBQ14160 1630 aa38.44■■■■□ 3.74
EPHB4-205ENST00000478459 SHROOM4Q9ULL8 1493 aa37.82■■■■□ 3.64
EPHB4-205ENST00000478459 CC2D2AQ9P2K1 1620 aa37.61■■■■□ 3.61
EPHB4-205ENST00000478459 EIF4G1Q04637 1599 aaKnown RBP37.59■■■■□ 3.61
EPHB4-205ENST00000478459 CECR2Q9BXF3 1484 aa37.39■■■■□ 3.58
EPHB4-205ENST00000478459 SMARCA4P51532 1647 aa36.59■■■■□ 3.45
EPHB4-205ENST00000478459 ATAD2BQ9ULI0 1458 aa36.46■■■■□ 3.43
EPHB4-205ENST00000478459 NCAPD3P42695 1498 aa36.42■■■■□ 3.42
EPHB4-205ENST00000478459 BAZ1AQ9NRL2 1556 aaPredicted RBP36.4■■■■□ 3.42
EPHB4-205ENST00000478459 SMARCA2P51531 1590 aa36.34■■■■□ 3.41
EPHB4-205ENST00000478459 MROH2BQ7Z745 1585 aa36.29■■■■□ 3.4
EPHB4-205ENST00000478459 HMGXB3Q12766 1538 aa36.21■■■■□ 3.39
EPHB4-205ENST00000478459 BAZ1BQ9UIG0 1483 aaKnown RBP36.18■■■■□ 3.38
EPHB4-205ENST00000478459 PEG3Q9GZU2 1588 aa36.08■■■■□ 3.37
EPHB4-205ENST00000478459 WIZO95785 1651 aa35.95■■■■□ 3.35
EPHB4-205ENST00000478459 NESP48681 1621 aa35.95■■■■□ 3.35
EPHB4-205ENST00000478459 ERCC6Q03468 1493 aa35.9■■■■□ 3.34
EPHB4-205ENST00000478459 RSF1Q96T23 1441 aaPredicted RBP35.65■■■■□ 3.3
EPHB4-205ENST00000478459 LAMC3Q9Y6N6 1575 aa35.58■■■■□ 3.29
EPHB4-205ENST00000478459 CUX2O14529 1486 aa35.51■■■■□ 3.28
EPHB4-205ENST00000478459 KIF21AQ7Z4S6 1674 aa35.51■■■■□ 3.28
EPHB4-205ENST00000478459 CADPSQ9ULU8 1353 aa35.39■■■■□ 3.26
EPHB4-205ENST00000478459 THOC2Q8NI27 1593 aaKnown RBP35.38■■■■□ 3.25
EPHB4-205ENST00000478459 TOP2AP11388 1531 aaKnown RBP35.38■■■■□ 3.25
EPHB4-205ENST00000478459 PDS5BQ9NTI5 1447 aa35.35■■■■□ 3.25
EPHB4-205ENST00000478459 CFTRP13569 1480 aa35.07■■■■□ 3.2
EPHB4-205ENST00000478459 MRC2Q9UBG0 1479 aa35.07■■■■□ 3.2
EPHB4-205ENST00000478459 FANCD2Q9BXW9 1451 aa35.06■■■■□ 3.2
EPHB4-205ENST00000478459 CEP164Q9UPV0 1460 aa35.04■■■■□ 3.2
EPHB4-205ENST00000478459 DNAJC5Q9H3Z4 198 aa35.03■■■■□ 3.2
EPHB4-205ENST00000478459 CCDC88BA6NC98 1476 aa35.03■■■■□ 3.2
EPHB4-205ENST00000478459 WDR62O43379 1518 aa34.94■■■■□ 3.18
EPHB4-205ENST00000478459 PRDM2Q13029 1718 aa34.86■■■■□ 3.17
EPHB4-205ENST00000478459 URB2Q14146 1524 aaKnown RBP34.77■■■■□ 3.16
EPHB4-205ENST00000478459 SUPT5HO00267 1087 aaKnown RBP34.64■■■■□ 3.14
EPHB4-205ENST00000478459 TOPBP1Q92547 1522 aa34.45■■■■□ 3.1
EPHB4-205ENST00000478459 DNMBPQ6XZF7 1577 aa34.34■■■■□ 3.09
EPHB4-205ENST00000478459 ZNF608Q9ULD9 1512 aaPredicted RBP34.31■■■■□ 3.08
EPHB4-205ENST00000478459 IFT140Q96RY7 1462 aa34.27■■■■□ 3.08
EPHB4-205ENST00000478459 ABCC8Q09428 1581 aa34.25■■■■□ 3.07
EPHB4-205ENST00000478459 EIF4G3O43432 1585 aaKnown RBP34.12■■■■□ 3.05
EPHB4-205ENST00000478459 POLA1P09884 1462 aaPredicted RBP34.12■■■■□ 3.05
EPHB4-205ENST00000478459 TARBP1Q13395 1621 aaKnown RBP34.11■■■■□ 3.05
EPHB4-205ENST00000478459 RAD54L2Q9Y4B4 1467 aa34.09■■■■□ 3.05
EPHB4-205ENST00000478459 CUX1P39880 1505 aa34.06■■■■□ 3.04
EPHB4-205ENST00000478459 AQRO60306 1485 aaKnown RBP eCLIP34.06■■■■□ 3.043e-7■■■■■ 26.9
EPHB4-205ENST00000478459 OSCARQ8IYS5 282 aa34.04■■■■□ 3.04
EPHB4-205ENST00000478459 FGD5Q6ZNL6 1462 aa34.01■■■■□ 3.04
EPHB4-205ENST00000478459 SOGA1O94964 1423 aa33.98■■■■□ 3.03
EPHB4-205ENST00000478459 TRIM41Q8WV44 630 aa33.95■■■■□ 3.03
EPHB4-205ENST00000478459 TDRD9Q8NDG6 1382 aaKnown RBP33.93■■■■□ 3.02
EPHB4-205ENST00000478459 CHD1O14646 1710 aa33.86■■■■□ 3.01
EPHB4-205ENST00000478459 FBLN2P98095 1184 aa33.83■■■■□ 3.01
EPHB4-205ENST00000478459 WDR97A6NE52 1622 aa33.74■■■□□ 2.99
EPHB4-205ENST00000478459 SNAPC4Q5SXM2 1469 aa33.7■■■□□ 2.99
EPHB4-205ENST00000478459 SYNJ1O43426 1573 aa33.66■■■□□ 2.98
EPHB4-205ENST00000478459 RIMBP3CA6NJZ7 1639 aa33.65■■■□□ 2.98
EPHB4-205ENST00000478459 RIMBP3BA6NNM3 1639 aa33.65■■■□□ 2.98
EPHB4-205ENST00000478459 RIMBP3Q9UFD9 1639 aa33.65■■■□□ 2.98
EPHB4-205ENST00000478459 PBRM1Q86U86 1689 aa33.63■■■□□ 2.97
EPHB4-205ENST00000478459 WRNQ14191 1432 aaPredicted RBP eCLIP33.62■■■□□ 2.97
EPHB4-205ENST00000478459 BIVM-ERCC5R4GMW8 1640 aa33.6■■■□□ 2.97
EPHB4-205ENST00000478459 GRIN2BQ13224 1484 aa33.59■■■□□ 2.97
EPHB4-205ENST00000478459 TOP2BQ02880 1626 aa33.58■■■□□ 2.97
EPHB4-205ENST00000478459 GAPVD1Q14C86 1478 aa33.57■■■□□ 2.97
EPHB4-205ENST00000478459 ABCA10Q8WWZ4 1543 aa33.54■■■□□ 2.96
EPHB4-205ENST00000478459 CHMP7Q8WUX9 453 aaPredicted RBP33.54■■■□□ 2.96
EPHB4-205ENST00000478459 ARHGEF11O15085 1522 aa33.53■■■□□ 2.96
EPHB4-205ENST00000478459 ABCA5Q8WWZ7 1642 aa33.52■■■□□ 2.96
EPHB4-205ENST00000478459 MAGI1Q96QZ7 1491 aaPredicted RBP33.5■■■□□ 2.95
EPHB4-205ENST00000478459 SYNJ2O15056 1496 aa33.42■■■□□ 2.94
EPHB4-205ENST00000478459 CYB5RLQ6IPT4 315 aa33.35■■■□□ 2.93
EPHB4-205ENST00000478459 CLASP1Q7Z460 1538 aa33.33■■■□□ 2.93
EPHB4-205ENST00000478459 ADAMTS12P58397 1594 aa33.26■■■□□ 2.91
EPHB4-205ENST00000478459 ARAP1Q96P48 1450 aa33.25■■■□□ 2.91
EPHB4-205ENST00000478459 GRIN2AQ12879 1464 aa33.18■■■□□ 2.9
EPHB4-205ENST00000478459 ERICH3Q5RHP9 1530 aa33.12■■■□□ 2.89
EPHB4-205ENST00000478459 CEP170Q5SW79 1584 aa33.11■■■□□ 2.89
EPHB4-205ENST00000478459 FHAD1B1AJZ9 1412 aa33.11■■■□□ 2.89
EPHB4-205ENST00000478459 ERCC6L2Q5T890 1561 aa33■■■□□ 2.87
EPHB4-205ENST00000478459 NUP160Q12769 1436 aa32.99■■■□□ 2.87
EPHB4-205ENST00000478459 KIF27Q86VH2 1401 aa32.92■■■□□ 2.86
EPHB4-205ENST00000478459 TRHP20396 242 aaPredicted RBP32.88■■■□□ 2.85
EPHB4-205ENST00000478459 IGF1RP08069 1367 aa32.85■■■□□ 2.85
EPHB4-205ENST00000478459 SHROOM2Q13796 1616 aa32.83■■■□□ 2.85
EPHB4-205ENST00000478459 CUL7Q14999 1698 aa32.78■■■□□ 2.84
EPHB4-205ENST00000478459 RUSC2Q8N2Y8 1516 aa32.77■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms