RNA–Protein interactions for RNA: ENST00000439681.1

UBR3-205, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 2

Gene UBR3, Length 2,183 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-205ENST00000439681 NISCHQ9Y2I1 1504 aa17.58■□□□□ 0.4
UBR3-205ENST00000439681 CCDC180Q9P1Z9 1646 aa15.39■□□□□ 0.05
UBR3-205ENST00000439681 ABCC9O60706 1549 aa14.87□□□□□ -0.03
UBR3-205ENST00000439681 ZCCHC6Q5VYS8 1495 aaKnown RBP14.7□□□□□ -0.06
UBR3-205ENST00000439681 DCAF8L2P0C7V8 631 aa14.61□□□□□ -0.07
UBR3-205ENST00000439681 DCAF1Q9Y4B6 1507 aa14.54□□□□□ -0.08
UBR3-205ENST00000439681 MYO15BQ96JP2 1530 aa14.48□□□□□ -0.09
UBR3-205ENST00000439681 NACADO15069 1562 aa14.45□□□□□ -0.1
UBR3-205ENST00000439681 RB1CC1Q8TDY2 1594 aa14.37□□□□□ -0.11
UBR3-205ENST00000439681 SHROOM4Q9ULL8 1493 aa14.12□□□□□ -0.15
UBR3-205ENST00000439681 SCRIBQ14160 1630 aa14.12□□□□□ -0.15
UBR3-205ENST00000439681 PABPN1Q86U42 306 aaKnown RBP eCLIP14.01□□□□□ -0.17
UBR3-205ENST00000439681 UNC13AQ9UPW8 1703 aa13.99□□□□□ -0.17
UBR3-205ENST00000439681 BICRAQ9NZM4 1560 aa13.97□□□□□ -0.17
UBR3-205ENST00000439681 CECR2Q9BXF3 1484 aa13.7□□□□□ -0.22
UBR3-205ENST00000439681 MROH2BQ7Z745 1585 aa13.57□□□□□ -0.24
UBR3-205ENST00000439681 BAZ1AQ9NRL2 1556 aaPredicted RBP13.57□□□□□ -0.24
UBR3-205ENST00000439681 EIF4G1Q04637 1599 aaKnown RBP13.56□□□□□ -0.24
UBR3-205ENST00000439681 RSF1Q96T23 1441 aaPredicted RBP13.55□□□□□ -0.24
UBR3-205ENST00000439681 SMARCA4P51532 1647 aa13.53□□□□□ -0.24
UBR3-205ENST00000439681 SUPT5HO00267 1087 aaKnown RBP13.47□□□□□ -0.25
UBR3-205ENST00000439681 DNAJC5BQ9UF47 199 aa13.46□□□□□ -0.25
UBR3-205ENST00000439681 ATAD2BQ9ULI0 1458 aa13.43□□□□□ -0.26
UBR3-205ENST00000439681 CC2D2AQ9P2K1 1620 aa13.42□□□□□ -0.26
UBR3-205ENST00000439681 PEG3Q9GZU2 1588 aa13.41□□□□□ -0.26
UBR3-205ENST00000439681 WIZO95785 1651 aa13.4□□□□□ -0.27
UBR3-205ENST00000439681 NCAPD3P42695 1498 aa13.39□□□□□ -0.27
UBR3-205ENST00000439681 SMARCA2P51531 1590 aa13.38□□□□□ -0.27
UBR3-205ENST00000439681 BAZ1BQ9UIG0 1483 aaKnown RBP13.31□□□□□ -0.28
UBR3-205ENST00000439681 HMGXB3Q12766 1538 aa13.29□□□□□ -0.28
UBR3-205ENST00000439681 TOP2AP11388 1531 aaKnown RBP13.27□□□□□ -0.28
UBR3-205ENST00000439681 CCDC88BA6NC98 1476 aa13.17□□□□□ -0.3
UBR3-205ENST00000439681 CADPSQ9ULU8 1353 aa13.02□□□□□ -0.32
UBR3-205ENST00000439681 CFTRP13569 1480 aa13□□□□□ -0.33
UBR3-205ENST00000439681 NESP48681 1621 aa12.97□□□□□ -0.33
UBR3-205ENST00000439681 LAMC3Q9Y6N6 1575 aa12.91□□□□□ -0.34
UBR3-205ENST00000439681 PDS5BQ9NTI5 1447 aa12.86□□□□□ -0.35
UBR3-205ENST00000439681 FANCD2Q9BXW9 1451 aa12.85□□□□□ -0.35
UBR3-205ENST00000439681 CHIC1Q5VXU3 224 aa12.77□□□□□ -0.36
UBR3-205ENST00000439681 CEP164Q9UPV0 1460 aa12.77□□□□□ -0.37
UBR3-205ENST00000439681 ERCC6Q03468 1493 aa12.75□□□□□ -0.37
UBR3-205ENST00000439681 PRDM2Q13029 1718 aa12.75□□□□□ -0.37
UBR3-205ENST00000439681 ABCC8Q09428 1581 aa12.75□□□□□ -0.37
UBR3-205ENST00000439681 WRNQ14191 1432 aaPredicted RBP eCLIP12.73□□□□□ -0.37
UBR3-205ENST00000439681 KIF21AQ7Z4S6 1674 aa12.72□□□□□ -0.37
UBR3-205ENST00000439681 URB2Q14146 1524 aaKnown RBP12.71□□□□□ -0.38
UBR3-205ENST00000439681 CUX1P39880 1505 aa12.7□□□□□ -0.38
UBR3-205ENST00000439681 MRC2Q9UBG0 1479 aa12.7□□□□□ -0.38
UBR3-205ENST00000439681 TRIM41Q8WV44 630 aa12.69□□□□□ -0.38
UBR3-205ENST00000439681 TOPBP1Q92547 1522 aa12.67□□□□□ -0.38
UBR3-205ENST00000439681 SYNJ1O43426 1573 aa12.67□□□□□ -0.38
UBR3-205ENST00000439681 DNMBPQ6XZF7 1577 aa12.65□□□□□ -0.38
UBR3-205ENST00000439681 TOP2BQ02880 1626 aa12.63□□□□□ -0.39
UBR3-205ENST00000439681 THOC2Q8NI27 1593 aaKnown RBP12.63□□□□□ -0.39
UBR3-205ENST00000439681 WDR62O43379 1518 aa12.63□□□□□ -0.39
UBR3-205ENST00000439681 BIVM-ERCC5R4GMW8 1640 aa12.6□□□□□ -0.39
UBR3-205ENST00000439681 FGD5Q6ZNL6 1462 aa12.6□□□□□ -0.39
UBR3-205ENST00000439681 POLA1P09884 1462 aaPredicted RBP12.59□□□□□ -0.39
UBR3-205ENST00000439681 SOGA1O94964 1423 aa12.57□□□□□ -0.4
UBR3-205ENST00000439681 CUX2O14529 1486 aa12.57□□□□□ -0.4
UBR3-205ENST00000439681 RAD54L2Q9Y4B4 1467 aa12.56□□□□□ -0.4
UBR3-205ENST00000439681 IFT140Q96RY7 1462 aa12.51□□□□□ -0.41
UBR3-205ENST00000439681 ABCA10Q8WWZ4 1543 aa12.49□□□□□ -0.41
UBR3-205ENST00000439681 TARBP1Q13395 1621 aaKnown RBP12.48□□□□□ -0.41
UBR3-205ENST00000439681 TDRD9Q8NDG6 1382 aaKnown RBP12.48□□□□□ -0.41
UBR3-205ENST00000439681 RUSC2Q8N2Y8 1516 aa12.47□□□□□ -0.41
UBR3-205ENST00000439681 ZNF608Q9ULD9 1512 aaPredicted RBP12.45□□□□□ -0.42
UBR3-205ENST00000439681 KIF27Q86VH2 1401 aa12.44□□□□□ -0.42
UBR3-205ENST00000439681 AQRO60306 1485 aaKnown RBP eCLIP12.44□□□□□ -0.42
UBR3-205ENST00000439681 FAM9AQ8IZU1 332 aaPredicted RBP12.44□□□□□ -0.42
UBR3-205ENST00000439681 IGF1RP08069 1367 aa12.42□□□□□ -0.42
UBR3-205ENST00000439681 WDR97A6NE52 1622 aa12.4□□□□□ -0.42
UBR3-205ENST00000439681 CSRNP3Q8WYN3 585 aa12.4□□□□□ -0.42
UBR3-205ENST00000439681 GAPVD1Q14C86 1478 aa12.4□□□□□ -0.42
UBR3-205ENST00000439681 EEA1Q15075 1411 aa12.4□□□□□ -0.42
UBR3-205ENST00000439681 ABCA5Q8WWZ7 1642 aa12.37□□□□□ -0.43
UBR3-205ENST00000439681 GRIN2BQ13224 1484 aa12.35□□□□□ -0.43
UBR3-205ENST00000439681 EIF4G3O43432 1585 aaKnown RBP12.34□□□□□ -0.43
UBR3-205ENST00000439681 ERICH3Q5RHP9 1530 aa12.33□□□□□ -0.44
UBR3-205ENST00000439681 CARMIL1Q5VZK9 1371 aa12.32□□□□□ -0.44
UBR3-205ENST00000439681 PRXQ9BXM0 1461 aa12.31□□□□□ -0.44
UBR3-205ENST00000439681 SNAPC4Q5SXM2 1469 aa12.29□□□□□ -0.44
UBR3-205ENST00000439681 FHAD1B1AJZ9 1412 aa12.28□□□□□ -0.44
UBR3-205ENST00000439681 LOC105371045A0A1W2PR82 267 aa12.28□□□□□ -0.44
UBR3-205ENST00000439681 MAGI1Q96QZ7 1491 aaPredicted RBP12.27□□□□□ -0.45
UBR3-205ENST00000439681 EHMT2Q96KQ7 1210 aa12.26□□□□□ -0.45
UBR3-205ENST00000439681 PBRM1Q86U86 1689 aa12.25□□□□□ -0.45
UBR3-205ENST00000439681 RAPGEF2Q9Y4G8 1499 aa12.25□□□□□ -0.45
UBR3-205ENST00000439681 CHMP7Q8WUX9 453 aaPredicted RBP12.24□□□□□ -0.45
UBR3-205ENST00000439681 ADAMTS12P58397 1594 aa12.23□□□□□ -0.45
UBR3-205ENST00000439681 SYNJ2O15056 1496 aa12.23□□□□□ -0.45
UBR3-205ENST00000439681 FBLN2P98095 1184 aa12.23□□□□□ -0.45
UBR3-205ENST00000439681 CUL7Q14999 1698 aa12.23□□□□□ -0.45
UBR3-205ENST00000439681 KIF21BO75037 1637 aa12.21□□□□□ -0.45
UBR3-205ENST00000439681 GOLGA3Q08378 1498 aa12.2□□□□□ -0.46
UBR3-205ENST00000439681 GRIN2AQ12879 1464 aa12.19□□□□□ -0.46
UBR3-205ENST00000439681 UBTFP17480 764 aaKnown RBP12.19□□□□□ -0.46
UBR3-205ENST00000439681 TNIKQ9UKE5 1360 aa12.15□□□□□ -0.46
UBR3-205ENST00000439681 NUP160Q12769 1436 aa12.14□□□□□ -0.47
UBR3-205ENST00000439681 OSCARQ8IYS5 282 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms