RNA–Protein interactions for RNA: ENST00000248594.10

PTPN12-201, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN12, Length 3,406 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-201ENST00000248594 NISCHQ9Y2I1 1504 aa33.57■■■□□ 2.97
PTPN12-201ENST00000248594 HRCP23327 699 aa30.94■■■□□ 2.54
PTPN12-201ENST00000248594 PPARGC1BQ86YN6 1023 aaKnown RBP30.92■■■□□ 2.54
PTPN12-201ENST00000248594 PCGF6Q9BYE7 350 aa30.69■■■□□ 2.5
PTPN12-201ENST00000248594 SHROOM4Q9ULL8 1493 aa30.59■■■□□ 2.49
PTPN12-201ENST00000248594 SUPT5HO00267 1087 aaKnown RBP30.44■■■□□ 2.46
PTPN12-201ENST00000248594 PELP1Q8IZL8 1130 aaKnown RBP30.29■■■□□ 2.44
PTPN12-201ENST00000248594 SCAF1Q9H7N4 1312 aaKnown RBP29.72■■■□□ 2.35
PTPN12-201ENST00000248594 DCAF8L2P0C7V8 631 aa29.69■■■□□ 2.34
PTPN12-201ENST00000248594 MYO15BQ96JP2 1530 aa29.48■■■□□ 2.31
PTPN12-201ENST00000248594 CCDC180Q9P1Z9 1646 aa29.41■■■□□ 2.3
PTPN12-201ENST00000248594 CHIC1Q5VXU3 224 aa29.39■■■□□ 2.3
PTPN12-201ENST00000248594 LOC105371045A0A1W2PR82 267 aa29.29■■■□□ 2.28
PTPN12-201ENST00000248594 MYT1Q01538 1121 aa29.1■■■□□ 2.25
PTPN12-201ENST00000248594 TRIM26Q12899 539 aaPredicted RBP29.01■■■□□ 2.24
PTPN12-201ENST00000248594 EHMT2Q96KQ7 1210 aa28.89■■■□□ 2.22
PTPN12-201ENST00000248594 GTF3C3Q9Y5Q9 886 aa28.87■■■□□ 2.21
PTPN12-201ENST00000248594 NEUROD1Q13562 356 aa28.86■■■□□ 2.21
PTPN12-201ENST00000248594 ACIN1Q9UKV3 1341 aaKnown RBP28.76■■■□□ 2.2
PTPN12-201ENST00000248594 ZEB1P37275 1124 aaPredicted RBP28.76■■■□□ 2.19
PTPN12-201ENST00000248594 DCAF1Q9Y4B6 1507 aa28.5■■■□□ 2.15
PTPN12-201ENST00000248594 CENPBP07199 599 aaPredicted RBP28.49■■■□□ 2.15
PTPN12-201ENST00000248594 YTHDC1Q96MU7 727 aaKnown RBP28.47■■■□□ 2.15
PTPN12-201ENST00000248594 FAM9AQ8IZU1 332 aaPredicted RBP28.4■■■□□ 2.14
PTPN12-201ENST00000248594 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.28■■■□□ 2.12
PTPN12-201ENST00000248594 DIEXFQ68CQ4 756 aaKnown RBP28.23■■■□□ 2.11
PTPN12-201ENST00000248594 CCER1Q8TC90 406 aaPredicted RBP28.22■■■□□ 2.11
PTPN12-201ENST00000248594 ZCCHC6Q5VYS8 1495 aaKnown RBP28.14■■■□□ 2.1
PTPN12-201ENST00000248594 TTBK1Q5TCY1 1321 aaPredicted RBP28.12■■■□□ 2.09
PTPN12-201ENST00000248594 ABCC9O60706 1549 aa28.01■■■□□ 2.08
PTPN12-201ENST00000248594 BCL11AQ9H165 835 aa27.78■■■□□ 2.04
PTPN12-201ENST00000248594 TRIM41Q8WV44 630 aa27.72■■■□□ 2.03
PTPN12-201ENST00000248594 MIER1Q8N108 512 aa27.48■■□□□ 1.99
PTPN12-201ENST00000248594 NACADO15069 1562 aa27.43■■□□□ 1.98
PTPN12-201ENST00000248594 ZNF316A6NFI3 1004 aaPredicted RBP27.38■■□□□ 1.97
PTPN12-201ENST00000248594 ANP32EQ9BTT0 268 aa27.35■■□□□ 1.97
PTPN12-201ENST00000248594 CSRNP3Q8WYN3 585 aa27.31■■□□□ 1.96
PTPN12-201ENST00000248594 RB1CC1Q8TDY2 1594 aa27.26■■□□□ 1.95
PTPN12-201ENST00000248594 BCANQ96GW7 911 aa27.22■■□□□ 1.95
PTPN12-201ENST00000248594 PRKCSHP14314 528 aaPredicted RBP27.21■■□□□ 1.95
PTPN12-201ENST00000248594 TSHZ2Q9NRE2 1034 aa27.1■■□□□ 1.93
PTPN12-201ENST00000248594 SUPT16HQ9Y5B9 1047 aaKnown RBP27.1■■□□□ 1.93
PTPN12-201ENST00000248594 SCRIBQ14160 1630 aa27.01■■□□□ 1.92
PTPN12-201ENST00000248594 HNRNPUL2Q1KMD3 747 aaKnown RBP26.97■■□□□ 1.91
PTPN12-201ENST00000248594 RANGAP1P46060 587 aaPredicted RBP26.87■■□□□ 1.89
PTPN12-201ENST00000248594 UNC13AQ9UPW8 1703 aa26.78■■□□□ 1.88
PTPN12-201ENST00000248594 ITGAEP38570 1179 aa26.65■■□□□ 1.86
PTPN12-201ENST00000248594 RSF1Q96T23 1441 aaPredicted RBP26.64■■□□□ 1.86
PTPN12-201ENST00000248594 FKBP8Q14318 412 aa26.63■■□□□ 1.85
PTPN12-201ENST00000248594 ERICH6Q7L0X2 663 aa26.6■■□□□ 1.85
PTPN12-201ENST00000248594 UBTFP17480 764 aaKnown RBP26.51■■□□□ 1.83
PTPN12-201ENST00000248594 RBM19Q9Y4C8 960 aaKnown RBP26.5■■□□□ 1.83
PTPN12-201ENST00000248594 KCNH8Q96L42 1107 aa26.48■■□□□ 1.83
PTPN12-201ENST00000248594 BICRAQ9NZM4 1560 aa26.45■■□□□ 1.83
PTPN12-201ENST00000248594 NEFLP07196 543 aa26.39■■□□□ 1.82
PTPN12-201ENST00000248594 CLSPNQ9HAW4 1339 aa26.37■■□□□ 1.81
PTPN12-201ENST00000248594 PABPN1Q86U42 306 aaKnown RBP eCLIP26.37■■□□□ 1.81
PTPN12-201ENST00000248594 CECR2Q9BXF3 1484 aa26.36■■□□□ 1.81
PTPN12-201ENST00000248594 MSH5O43196 834 aa26.24■■□□□ 1.79
PTPN12-201ENST00000248594 ANO8Q9HCE9 1232 aaPredicted RBP26.23■■□□□ 1.79
PTPN12-201ENST00000248594 TRIM52Q96A61 297 aa26.2■■□□□ 1.79
PTPN12-201ENST00000248594 IRX6P78412 446 aaPredicted RBP26.16■■□□□ 1.78
PTPN12-201ENST00000248594 APLP2Q06481 763 aa26.15■■□□□ 1.78
PTPN12-201ENST00000248594 CEP162Q5TB80 1403 aa26.11■■□□□ 1.77
PTPN12-201ENST00000248594 NBR1Q14596 966 aa26.1■■□□□ 1.77
PTPN12-201ENST00000248594 DEKP35659 375 aaKnown RBP26.09■■□□□ 1.77
PTPN12-201ENST00000248594 CCDC136Q96JN2 1154 aa26.08■■□□□ 1.77
PTPN12-201ENST00000248594 MROH2BQ7Z745 1585 aa26.02■■□□□ 1.76
PTPN12-201ENST00000248594 DDX10Q13206 875 aaKnown RBP26.01■■□□□ 1.75
PTPN12-201ENST00000248594 RTN4Q9NQC3 1192 aaKnown RBP25.99■■□□□ 1.75
PTPN12-201ENST00000248594 ABCC8Q09428 1581 aa25.96■■□□□ 1.75
PTPN12-201ENST00000248594 HIRIP3Q9BW71 556 aaPredicted RBP25.95■■□□□ 1.75
PTPN12-201ENST00000248594 BAZ1AQ9NRL2 1556 aaPredicted RBP25.94■■□□□ 1.74
PTPN12-201ENST00000248594 SOGA1O94964 1423 aa25.93■■□□□ 1.74
PTPN12-201ENST00000248594 CDK11AQ9UQ88 783 aaPredicted RBP25.92■■□□□ 1.74
PTPN12-201ENST00000248594 WIZO95785 1651 aa25.9■■□□□ 1.74
PTPN12-201ENST00000248594 SALL2Q9Y467 1007 aaPredicted RBP25.89■■□□□ 1.74
PTPN12-201ENST00000248594 SMARCA4P51532 1647 aa25.88■■□□□ 1.73
PTPN12-201ENST00000248594 CCDC88BA6NC98 1476 aa25.87■■□□□ 1.73
PTPN12-201ENST00000248594 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.86■■□□□ 1.73
PTPN12-201ENST00000248594 RUSC2Q8N2Y8 1516 aa25.83■■□□□ 1.72
PTPN12-201ENST00000248594 WRNQ14191 1432 aaPredicted RBP eCLIP25.79■■□□□ 1.72
PTPN12-201ENST00000248594 EIF4G1Q04637 1599 aaKnown RBP25.67■■□□□ 1.7
PTPN12-201ENST00000248594 TNIKQ9UKE5 1360 aa25.66■■□□□ 1.7
PTPN12-201ENST00000248594 IL27Q8NEV9 243 aa25.61■■□□□ 1.69
PTPN12-201ENST00000248594 FANCIQ9NVI1 1328 aa25.61■■□□□ 1.69
PTPN12-201ENST00000248594 RTL5Q5HYW3 569 aaPredicted RBP25.6■■□□□ 1.69
PTPN12-201ENST00000248594 HNRNPUQ00839 825 aaKnown RBP eCLIP25.59■■□□□ 1.69
PTPN12-201ENST00000248594 DHX57Q6P158 1386 aaKnown RBP25.58■■□□□ 1.69
PTPN12-201ENST00000248594 ANP32CO43423 234 aa25.58■■□□□ 1.69
PTPN12-201ENST00000248594 EIF5BO60841 1220 aaKnown RBP25.57■■□□□ 1.68
PTPN12-201ENST00000248594 PEG3Q9GZU2 1588 aa25.56■■□□□ 1.68
PTPN12-201ENST00000248594 B4GALNT3Q6L9W6 998 aa25.53■■□□□ 1.68
PTPN12-201ENST00000248594 PAK3O75914 559 aaPredicted RBP25.53■■□□□ 1.68
PTPN12-201ENST00000248594 MYT1LQ9UL68 1186 aa25.5■■□□□ 1.67
PTPN12-201ENST00000248594 ATAD2BQ9ULI0 1458 aa25.49■■□□□ 1.67
PTPN12-201ENST00000248594 NOP58Q9Y2X3 529 aaKnown RBP25.49■■□□□ 1.67
PTPN12-201ENST00000248594 SMARCA2P51531 1590 aa25.47■■□□□ 1.67
PTPN12-201ENST00000248594 ATP1B4Q9UN42 357 aaPredicted RBP25.45■■□□□ 1.66
PTPN12-201ENST00000248594 SIN3AQ96ST3 1273 aa25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms