RNA–Protein interactions for RNA: ENST00000368905.8

SCNM1-202, Transcript of sodium channel modifier 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCNM1, Length 2,016 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCNM1-202ENST00000368905 SLC24A1O60721 1099 aa19.97■□□□□ 0.79
SCNM1-202ENST00000368905 NISCHQ9Y2I1 1504 aa19.88■□□□□ 0.77
SCNM1-202ENST00000368905 DAXXQ9UER7 740 aaPredicted RBP18.32■□□□□ 0.52
SCNM1-202ENST00000368905 MYT1Q01538 1121 aa18.16■□□□□ 0.5
SCNM1-202ENST00000368905 TTBK1Q5TCY1 1321 aaPredicted RBP18.12■□□□□ 0.49
SCNM1-202ENST00000368905 EHMT2Q96KQ7 1210 aa18.11■□□□□ 0.49
SCNM1-202ENST00000368905 CHIC1Q5VXU3 224 aa18■□□□□ 0.47
SCNM1-202ENST00000368905 NCBP3Q53F19 620 aaKnown RBP17.81■□□□□ 0.44
SCNM1-202ENST00000368905 PELP1Q8IZL8 1130 aaKnown RBP17.79■□□□□ 0.44
SCNM1-202ENST00000368905 PLPPR3Q6T4P5 718 aa17.7■□□□□ 0.42
SCNM1-202ENST00000368905 RTN4Q9NQC3 1192 aaKnown RBP17.7■□□□□ 0.42
SCNM1-202ENST00000368905 APLP2Q06481 763 aa17.65■□□□□ 0.42
SCNM1-202ENST00000368905 ERICH6Q7L0X2 663 aa17.58■□□□□ 0.4
SCNM1-202ENST00000368905 PRKCSHP14314 528 aaPredicted RBP17.48■□□□□ 0.39
SCNM1-202ENST00000368905 AMER1Q5JTC6 1135 aaPredicted RBP17.42■□□□□ 0.38
SCNM1-202ENST00000368905 CCDC180Q9P1Z9 1646 aa17.26■□□□□ 0.35
SCNM1-202ENST00000368905 ARXQ96QS3 562 aa17.23■□□□□ 0.35
SCNM1-202ENST00000368905 KCNA4P22459 653 aa16.94■□□□□ 0.3
SCNM1-202ENST00000368905 RANGAP1P46060 587 aaPredicted RBP16.87■□□□□ 0.29
SCNM1-202ENST00000368905 TIMELESSQ9UNS1 1208 aa16.86■□□□□ 0.29
SCNM1-202ENST00000368905 CSRNP3Q8WYN3 585 aa16.79■□□□□ 0.28
SCNM1-202ENST00000368905 ZCCHC6Q5VYS8 1495 aaKnown RBP16.78■□□□□ 0.28
SCNM1-202ENST00000368905 HOMEZQ8IX15 550 aa16.65■□□□□ 0.26
SCNM1-202ENST00000368905 TULP1O00294 542 aaPredicted RBP16.6■□□□□ 0.25
SCNM1-202ENST00000368905 ABCC9O60706 1549 aa16.6■□□□□ 0.25
SCNM1-202ENST00000368905 EIF5BO60841 1220 aaKnown RBP16.57■□□□□ 0.24
SCNM1-202ENST00000368905 TAOK2Q9UL54 1235 aa16.57■□□□□ 0.24
SCNM1-202ENST00000368905 SHROOM4Q9ULL8 1493 aa16.5■□□□□ 0.23
SCNM1-202ENST00000368905 DCAF1Q9Y4B6 1507 aa16.47■□□□□ 0.23
SCNM1-202ENST00000368905 AEBP2Q6ZN18 517 aaPredicted RBP16.43■□□□□ 0.22
SCNM1-202ENST00000368905 BCANQ96GW7 911 aa16.39■□□□□ 0.21
SCNM1-202ENST00000368905 KLHL34Q8N239 644 aa16.36■□□□□ 0.21
SCNM1-202ENST00000368905 DCAF8L2P0C7V8 631 aa16.32■□□□□ 0.2
SCNM1-202ENST00000368905 PODXL2Q9NZ53 605 aa16.28■□□□□ 0.2
SCNM1-202ENST00000368905 TPRNQ4KMQ1 711 aa16.26■□□□□ 0.19
SCNM1-202ENST00000368905 PHF23Q9BUL5 403 aaPredicted RBP16.23■□□□□ 0.19
SCNM1-202ENST00000368905 SUPT5HO00267 1087 aaKnown RBP16.14■□□□□ 0.17
SCNM1-202ENST00000368905 NACADO15069 1562 aa16.14■□□□□ 0.17
SCNM1-202ENST00000368905 MYO15BQ96JP2 1530 aa16.12■□□□□ 0.17
SCNM1-202ENST00000368905 RB1CC1Q8TDY2 1594 aa16.11■□□□□ 0.17
SCNM1-202ENST00000368905 GTF3C3Q9Y5Q9 886 aa16.1■□□□□ 0.17
SCNM1-202ENST00000368905 PLCB2Q00722 1185 aa15.97■□□□□ 0.15
SCNM1-202ENST00000368905 NPM2Q86SE8 214 aaKnown RBP15.97■□□□□ 0.15
SCNM1-202ENST00000368905 SLC4A1APQ9BWU0 796 aaKnown RBP15.85■□□□□ 0.13
SCNM1-202ENST00000368905 PLEKHG5O94827 1062 aa15.85■□□□□ 0.13
SCNM1-202ENST00000368905 HAP1P54257 671 aaPredicted RBP15.81■□□□□ 0.12
SCNM1-202ENST00000368905 SCRIBQ14160 1630 aa15.8■□□□□ 0.12
SCNM1-202ENST00000368905 FBXO3Q9UK99 471 aa15.79■□□□□ 0.12
SCNM1-202ENST00000368905 C14orf37Q86TY3 774 aa15.75■□□□□ 0.11
SCNM1-202ENST00000368905 UNC13AQ9UPW8 1703 aa15.75■□□□□ 0.11
SCNM1-202ENST00000368905 TMEM132AQ24JP5 1023 aa15.72■□□□□ 0.11
SCNM1-202ENST00000368905 BCL11AQ9H165 835 aa15.69■□□□□ 0.1
SCNM1-202ENST00000368905 RSF1Q96T23 1441 aaPredicted RBP15.58■□□□□ 0.08
SCNM1-202ENST00000368905 BICRAQ9NZM4 1560 aa15.58■□□□□ 0.08
SCNM1-202ENST00000368905 PABPN1Q86U42 306 aaKnown RBP eCLIP15.53■□□□□ 0.08
SCNM1-202ENST00000368905 TRIM26Q12899 539 aaPredicted RBP15.49■□□□□ 0.07
SCNM1-202ENST00000368905 VSIG10Q8N0Z9 540 aa15.48■□□□□ 0.07
SCNM1-202ENST00000368905 LOC105371045A0A1W2PR82 267 aa15.36■□□□□ 0.05
SCNM1-202ENST00000368905 CECR2Q9BXF3 1484 aa15.36■□□□□ 0.05
SCNM1-202ENST00000368905 PDIA4P13667 645 aaKnown RBP15.36■□□□□ 0.05
SCNM1-202ENST00000368905 BAZ1AQ9NRL2 1556 aaPredicted RBP15.34■□□□□ 0.05
SCNM1-202ENST00000368905 MROH2BQ7Z745 1585 aa15.34■□□□□ 0.05
SCNM1-202ENST00000368905 FAM9AQ8IZU1 332 aaPredicted RBP15.26■□□□□ 0.03
SCNM1-202ENST00000368905 HRCP23327 699 aa15.24■□□□□ 0.03
SCNM1-202ENST00000368905 WIZO95785 1651 aa15.24■□□□□ 0.03
SCNM1-202ENST00000368905 UBE2Q2Q8WVN8 375 aa15.22■□□□□ 0.03
SCNM1-202ENST00000368905 UBTFP17480 764 aaKnown RBP15.21■□□□□ 0.03
SCNM1-202ENST00000368905 TRIM41Q8WV44 630 aa15.19■□□□□ 0.02
SCNM1-202ENST00000368905 SMARCA4P51532 1647 aa15.19■□□□□ 0.02
SCNM1-202ENST00000368905 KDM2AQ9Y2K7 1162 aa15.18■□□□□ 0.02
SCNM1-202ENST00000368905 EIF4G1Q04637 1599 aaKnown RBP15.17■□□□□ 0.02
SCNM1-202ENST00000368905 ZBTB22O15209 634 aa15.15■□□□□ 0.02
SCNM1-202ENST00000368905 CHMP4AQ9BY43 222 aa15.15■□□□□ 0.02
SCNM1-202ENST00000368905 TOP2AP11388 1531 aaKnown RBP15.13■□□□□ 0.01
SCNM1-202ENST00000368905 CDK11BP21127 795 aaKnown RBP15.12■□□□□ 0.01
SCNM1-202ENST00000368905 CDK11AQ9UQ88 783 aaPredicted RBP15.12■□□□□ 0.01
SCNM1-202ENST00000368905 CNKSR2Q8WXI2 1034 aa15.07■□□□□ 0
SCNM1-202ENST00000368905 CC2D2AQ9P2K1 1620 aa15.04■□□□□ -0
SCNM1-202ENST00000368905 FKBP8Q14318 412 aa15.03■□□□□ -0
SCNM1-202ENST00000368905 PDE4CQ08493 712 aa15.02■□□□□ -0
SCNM1-202ENST00000368905 SAMD1Q6SPF0 538 aaPredicted RBP15.02□□□□□ -0.01
SCNM1-202ENST00000368905 FBLN2P98095 1184 aa15□□□□□ -0.01
SCNM1-202ENST00000368905 BRD2P25440 801 aaKnown RBP14.99□□□□□ -0.01
SCNM1-202ENST00000368905 PEG3Q9GZU2 1588 aa14.99□□□□□ -0.01
SCNM1-202ENST00000368905 SMARCA2P51531 1590 aa14.98□□□□□ -0.01
SCNM1-202ENST00000368905 CCDC88BA6NC98 1476 aa14.97□□□□□ -0.01
SCNM1-202ENST00000368905 NEFLP07196 543 aa14.95□□□□□ -0.02
SCNM1-202ENST00000368905 HMGB1P09429 215 aaKnown RBP14.95□□□□□ -0.02
SCNM1-202ENST00000368905 ATAD2BQ9ULI0 1458 aa14.93□□□□□ -0.02
SCNM1-202ENST00000368905 TAF7LQ5H9L4 462 aa14.92□□□□□ -0.02
SCNM1-202ENST00000368905 DNAJC5BQ9UF47 199 aa14.92□□□□□ -0.02
SCNM1-202ENST00000368905 PCGF6Q9BYE7 350 aa14.88□□□□□ -0.03
SCNM1-202ENST00000368905 HSP90B1P14625 803 aaKnown RBP14.87□□□□□ -0.03
SCNM1-202ENST00000368905 NCAPD3P42695 1498 aa14.87□□□□□ -0.03
SCNM1-202ENST00000368905 DHX37Q8IY37 1157 aaKnown RBP14.85□□□□□ -0.03
SCNM1-202ENST00000368905 HMGXB3Q12766 1538 aa14.85□□□□□ -0.03
SCNM1-202ENST00000368905 BAZ1BQ9UIG0 1483 aaKnown RBP14.84□□□□□ -0.03
SCNM1-202ENST00000368905 IGSF3O75054 1194 aa14.81□□□□□ -0.04
SCNM1-202ENST00000368905 PPP6R1Q9UPN7 881 aa14.8□□□□□ -0.04
SCNM1-202ENST00000368905 CCDC9Q9Y3X0 531 aaKnown RBP14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms